KnownGene build: Difference between revisions
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(Created page with "== Build UniProt and Protein databases == == Initialize work directory == *Create and cd into work directory of the form /hive/data/genomes/$db/bed/gencode$GENCODE_VERSION...") |
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== Adding IsPcr server | == Adding IsPcr server | ||
== all.joiner changes == | == all.joiner changes == | ||
== Redmine ticket files and tables == | |||
Revision as of 17:12, 23 August 2021
Build UniProt and Protein databases
Initialize work directory
- Create and cd into work directory of the form /hive/data/genomes/$db/bed/gencode$GENCODE_VERSION/build
- Start a screen.
- Copy buildEnv.sh from previous build on this db
Setting environment variables
The environment variables used in the build are set in the script buildEnv.sh. All the other scripts assume that this script has been sourced in the current shell.
Extracting Gencode data
Building initial knownGene table
Adding primary reference tables
Building final knownGene core tables
Building bigGenePred
Adding trackDb entry
== Adding IsPcr server
