Description
Summary: Main data files and backing data for the analysis identifying
positively selected codons. This data and updates are available for
download from here: http://www.ebi.ac.uk/~greg/mammals/
Contact: Gregory Jordan
Pol_sel_score.bed - one region per Ensembl gene analyzed, with a score corresponding to the negative log of an overall p-value for positive selection at that gene based on mammalian alignments.^M Overall_dN_dS.bed - one region per Ensembl gene analyzed, with a score corresponding to the overall dN/dS at that gene based on mammalian alignments.^M Sites.bedGraph - one value per codon analyzed, with a score corresponding to the signed sitewise likelihood ratio statistic for non-neutral selection. V
alues above zero indicate evidence for positive selection, values below zero ind
icate evidence for negative selection. The statistic is approximately chi-square
distributed when the data is neutrally evolving. The bedGraph file looks best
when displayed on UCSC the following track parameters:^M
??type=bigWig^M
??lineMark=0^M
??lineOnOff=on^M
??autoScale=off^M
??viewLimits=-20:10^M??minLimit=-20^M
??maxLimit=10^M??visibility=full^M
Detail
There are three tracks in this set:
- Constraint Elements omega branch length score,
data: mean: 4.255876, min: 0.301830, max: 7.376400, std: 0.731477
Credits
Contact: Gregory Jordan
References