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| Start with a fresh Ubuntu 13.04 image, call the main user "browser".
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| apt-get install localepurge zerofree
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| # I think we don't need these packages... saves around 300MB
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| apt-get remove python3* linux-headers* aptitude man-db perl perl-modules geoip-database language-pack-gnome-en-base manpages ppp acpi iso-codes
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| # wanna remove more? show packages by size: dpkg-query --show --showformat='${Package;-50}\t${Installed-Size}\n' | sort -k 2 -n
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| apt-get install apache2 mysql-server mysql-client
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| Now install the genome browser:
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| wget http://hgwdev.soe.ucsc.edu/~max/gbInstall/ubuntu.sh
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| source ubuntu.sh
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| It's nice to have shared folders:
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| sudo addgroup vboxsf
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| sufo adduser browser vboxsf
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| sudo wget http://hgwdev.soe.ucsc.edu/~max/gbInstall/rc.local -O /etc/rc.local
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| Once you're finished with everything ubuntu related, you can free 120 MB:
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| rm -f /var/lib/apt/lists/*
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| Now compact the disk image: reboot, press shift on boot, selected advanced, repair mode, root shell (different than telinit 1?):
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| mount -o remount,ro /
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| zerofree -v /dev/sda1
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| To show the IP address on startup, only necessary in bridged mode:
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| sudo wget http://hgwdev.soe.ucsc.edu/~max/gbInstall/show-ip-address -O /etc/network/if-up.d/show-ip-address
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| sudo chmod a+x /etc/network/if-up.d/show-ip-address
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| Leave VirtualBox, shutdown the VM, go to a command line on the host, find the .VDI file and compact it:
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| vboxmanage modifyhd –compact browserbox.vdi
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| * [[http://ianozsvald.com/2012/07/26/using-zerofree-to-shrink-a-virtualbox-linux-image/ Shrink the disk]]
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