Gene Set Summary Statistics: Difference between revisions

From genomewiki
Jump to navigationJump to search
Line 64: Line 64:
     <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr2:51992166-52194318 uc008jqv.1] (157)</TD>
     <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr2:51992166-52194318 uc008jqv.1] (157)</TD>
     <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr9:108855789-108886920 uc009rrh.1] (118)</TD>
     <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr9:108855789-108886920 uc009rrh.1] (118)</TD>
</TR>
</TABLE>
==Top five CDS size genes==
<TABLE BORDER=1>
<TR><TH>db</TH><TH COLSPAN=5>gene name (CDS size)</TH></TR>
<TR><TH>hg17</TH>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg17&position=chr7:145251476-147555734 NM_014141] (2298740)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg17&position=chrX:30897001-33117383 NM_000109] (2217347)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg17&position=chr11:82846624-85015962 CR749820] (2138880)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg17&position=chrX:30897001-32989330 NM_004006] (2089394)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg17&position=chrX:30898402-32989184 X14298] (2089394)</TD>
</TR>
<TR><TH>hg18</TH>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg18&position=chr7:145444385-147749019 uc003weu.1] (2298740)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg18&position=chrX:31047265-33267647 uc004ddb.1] (2217347)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg18&position=chr11:82843700-85015962 uc001pak.1] (2138880)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg18&position=chrX:31047265-33139594 uc004dda.1] (2089394)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg18&position=chr8:2782788-4839736 uc003wqd.1] (2055833)</TD>
</TR>
<TR><TH>mm8</TH>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm8&position=chrX:79201621-81457760 NM_007868] (2253366)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm8&position=chr6:44989694-47230955 NM_001004357] (2238304)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm8&position=chr2:40418781-42475607 NM_053011] (2055883)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm8&position=chr2:140086870-142081491 AK134694] (1988713)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm8&position=chr8:15895479-17535258 NM_053171] (1639258)</TD>
</TR>
<TR><TH>mm9</TH>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chrX:80194241-82450380 uc009tri.1] (2253366)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr6:45010086-47251368 uc009bst.1] (2238325)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr16:39984483-42176405 uc007zfr.1] (2189582)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr2:40452292-42509118 uc008jon.1] (2055883)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr2:140221165-142215786 uc008mpv.1] (1988713)</TD>
</TR>
</TR>
</TABLE>
</TABLE>

Revision as of 19:29, 14 September 2007

gene sets measured

  • hg17 - knownGenes version 2
  • hg18 - knownGenes version 3
  • mm8 - knownGenes version 2
  • mm9 - knownGenes version 3

The min, max and mean measurements are per gene

summary of gene and exon counts

dbgene
count
total exon
count
min exon
count
max exon
count
mean exon
count
hg1739368405720114910
hg1856722519308128999
mm831863314628131310
mm94922041711416108

summary of exon size statistics

dbsum exon
sizes
min exon
size
max exon
size
mean exon
size
hg17106839720118172263
hg18146371091136861282
mm883159087417497264
mm9117671086129698282

summary of intron size statistics

dbsum intron
sizes
min intron
size
max intron
size
mean intron
size
hg172223224397610964506069
hg182784923600110473206023
mm81476081990913475505220
mm92055504784112534305589

Top five exon count genes

dbgene name (exon count)
hg17 NM_004543 (149) AF535142 (146) AF535142 (146) NM_033071 (146) AF495910 (146)
hg18 uc001yrq.1 (2899) uc002zvw.1 (322) uc002umr.1 (313) uc002stk.1 (217) uc002umt.1 (194)
mm8 NM_011652 (313) NM_028004 (192) NM_007738 (118) NM_134448 (99) DQ067088 (99)
mm9 uc007pgj.1 (610) uc008kfn.1 (313) uc008kfo.1 (192) uc008jqv.1 (157) uc009rrh.1 (118)


Top five CDS size genes

dbgene name (CDS size)
hg17 NM_014141 (2298740) NM_000109 (2217347) CR749820 (2138880) NM_004006 (2089394) X14298 (2089394)
hg18 uc003weu.1 (2298740) uc004ddb.1 (2217347) uc001pak.1 (2138880) uc004dda.1 (2089394) uc003wqd.1 (2055833)
mm8 NM_007868 (2253366) NM_001004357 (2238304) NM_053011 (2055883) AK134694 (1988713) NM_053171 (1639258)
mm9 uc009tri.1 (2253366) uc009bst.1 (2238325) uc007zfr.1 (2189582) uc008jon.1 (2055883) uc008mpv.1 (1988713)