DanRer7 conservation lastz parameters: Difference between revisions

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(fixup M=40M mistake)
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==See Also:==
==see also==


<UL>
<UL>
<LI>[[DanRer7 Genome size statistics]]</LI>
<LI>Zebrafish 8-way [[DanRer7 Genome size statistics]]</LI>
<LI>[[DanRer7 conservation alignment]]</LI>
<LI>Zebrafish 8-way [[DanRer7 conservation alignment]]</LI>
<LI>[[Hg19 Genome size statistics]]</LI>
<LI>all other [[UCSC Multiple Alignments]]</LI>
<LI>[[Hg19 conservation alignment]]</LI>
<LI>[[Hg19 Andy's alignment notes]]</LI>
<LI>[[Hg18 44way blastz parameters]]</LI>
<LI>[[Genome size statistics|Hg18 Genome size statistics]]</LI>
<LI>[[Hg18 44way alignment]]</LI>
</UL>
</UL>


<TABLE BORDER=0>
<TABLE BORDER=0>

Latest revision as of 20:20, 19 May 2011

see also


The HoxD55
scoring matrix is:
 ACGT
A91-90-25-100
C-90100-100-25
G-25-100100-90
T-100-25-9091

O=400 E=30

do not edit, automatically generated table

query abridged
repeats(no)
M(0)K(3000) L(3000)QY(9400) program
run
E(30)H(0) O(400)T(1) chain table
date
% of danRer7
matched
(chainLink table)
% of query
matched
(chainLinkDanRer7)
Stickleback gasAcu1 no5030003000HoxD55.q 9400lastz3004001 2010-12-1710.270% 27.522%
Medaka oryLat2 no5030003000HoxD55.q 9400lastz3004001 2010-12-1710.032% 17.780%
Tetraodon tetNig2 no5030003000HoxD55.q 9400lastz3004001 2010-12-176.273% 23.571%
Fugu fr2 no5030003000HoxD55.q 9400lastz3004001 2010-12-217.363% 20.360%
X. tropicalis xenTro2 no022006000HoxD55.q 3400lastz3020004001 2010-12-176.428% 6.610%
Mouse mm9 no022006000HoxD55.q 3400lastz3020004001 2010-12-175.104% 2.602%
Human hg19 no022006000HoxD55.q 3400lastz3020004001 2010-12-206.151% 2.790%