Starting in David's group: Difference between revisions

From genomewiki
Jump to navigationJump to search
No edit summary
No edit summary
Line 1: Line 1:
* An older, non-wiki version of this page is on [http://genecats.cse.ucsc.edu/eng/index.html]
* An older, non-wiki version of this page is on [http://genecats.cse.ucsc.edu/eng/index.html]
* Administrative
* Administrative
** See [http://users.soe.ucsc.edu/~jill/postdoc.html Jill Bejerano's old page], tons of interesting stuff, unfortunately, not all of this is valid anymore (e.g. no need for credit history anymore these days, all you need is a debit card)
** Count on running around for 2-3 weeks to get all the paperwork done
** If you're a foreigner on J1 visa: you need ISSS to get your SEVIS entry OKed before you can apply for a social security number. After this, you have to wait until a day that is at least 10 days after your entry into the US, and 48 hours after ISSS has made the entry. You need to bring your DS2019 to ISS and your passport with the I94.
** If you're a foreigner on J1 visa: you need ISSS to get your SEVIS entry OKed before you can apply for a social security number. After this, you have to wait until a day that is at least 10 days after your entry into the US, and 48 hours after ISSS has made the entry. You need to bring your DS2019 to ISS and your passport with the I94.
** You will have an appointment at Human Resources on the ground floor of the Engineering 2 building (=our building) where you will have to fill out and sign tons of forms. They might also give you a campus map
** You will have an appointment at Human Resources on the ground floor of the Engineering 2 building (=our building) where you will have to fill out and sign tons of forms. They might also give you a campus map
Line 9: Line 11:
*** define your passwords and you're set
*** define your passwords and you're set
*** redirect your cruzId emails to your SOE account
*** redirect your cruzId emails to your SOE account
**** Look for the config buttons on the LEFT SIDE of your screen, that's actually a menu
** Subscribe to these two mailing lists
** Subscribe to these two mailing lists
*** genecats: https://lists.soe.ucsc.edu/mailman/listinfo/genecats
*** genecats: https://lists.soe.ucsc.edu/mailman/listinfo/genecats

Revision as of 21:11, 24 June 2011

  • An older, non-wiki version of this page is on [1]
  • Administrative
    • See Jill Bejerano's old page, tons of interesting stuff, unfortunately, not all of this is valid anymore (e.g. no need for credit history anymore these days, all you need is a debit card)
    • Count on running around for 2-3 weeks to get all the paperwork done
    • If you're a foreigner on J1 visa: you need ISSS to get your SEVIS entry OKed before you can apply for a social security number. After this, you have to wait until a day that is at least 10 days after your entry into the US, and 48 hours after ISSS has made the entry. You need to bring your DS2019 to ISS and your passport with the I94.
    • You will have an appointment at Human Resources on the ground floor of the Engineering 2 building (=our building) where you will have to fill out and sign tons of forms. They might also give you a campus map
    • Use the map to get to the University ID office, they will print your ID card (it is located at the intersection of Steinhart / Hager roads) see also campus map http://interactivemap.ucsc.edu/
    • Go to see Al McGuire in the Baskin Engineering building (the old building just in front) in room 399 amcguire@soe.ucsc.edu to get your card activated
    • You should have an SOE account / SOE email address, this should have been done automatically via human resources or Branwyn
    • You will receive cruzID registration emails
      • define your passwords and you're set
      • redirect your cruzId emails to your SOE account
        • Look for the config buttons on the LEFT SIDE of your screen, that's actually a menu
    • Subscribe to these two mailing lists
  • Technical
    • Add the "oops" printer (yes this is the DNS name), select the IPP protocol if asked
  • Clusters
    • swarm : ~ 200 nodes, 4 CPUs each 8GB RAM
    • encodek : 5 nodes, 4 CPUs each, 16GB RAM
    • memk : 8 nodes, 2 CPUs each, 32 GB RAM
  • Account config
    • use /cluster/install/utilities/chsh to change your shell to bash
    • copy ~hiram/.bashrc.hiram to your homedir and add the line "source .bashrc.hiram" to your own .bashrc file
    • If you have any problems with your account, email cluster-admin@soe.ucsc.edu
    • Read Cluster Jobs and "Where is everything" and "Parasol Manual"
    • make sure that you are a member of the "genecats" and "protein" groups
    • You might want to add these statements as well:
 complete -o default -W "create push try shove make check stop chill finished hung slow crashed failed status problems running hippos time recover priority maxJob resetCounts freeBatch showSickNodes clearSickNodes" para
  • Cancer stuff:
    • Install http://openvpn.net/index.php/open-source/downloads.html if you're on Windows or Mac
    • Get the .key and .cert files from Erich and place them into the openvpn/config directory.
    • place the .ovpn file into the same directory, adapt the paths
    • open the ovpn file with openvpn
Retrieved from "https://genomewiki.ucsc.edu/index.php?title=Starting_in_David%27s_group&oldid=14685"