Gene Set Summary Statistics: Difference between revisions

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<TR><TH>mm8</TH><TD ALIGN=RIGHT>1476080000</TD><TD ALIGN=RIGHT>9</TD><TD ALIGN=RIGHT>1347550</TD><TD ALIGN=RIGHT>5220</TD></TR>
<TR><TH>mm8</TH><TD ALIGN=RIGHT>1476080000</TD><TD ALIGN=RIGHT>9</TD><TD ALIGN=RIGHT>1347550</TD><TD ALIGN=RIGHT>5220</TD></TR>
<TR><TH>mm9</TH><TD ALIGN=RIGHT>2055500000</TD><TD ALIGN=RIGHT>1</TD><TD ALIGN=RIGHT>1253430</TD><TD ALIGN=RIGHT>5589</TD></TR>
<TR><TH>mm9</TH><TD ALIGN=RIGHT>2055500000</TD><TD ALIGN=RIGHT>1</TD><TD ALIGN=RIGHT>1253430</TD><TD ALIGN=RIGHT>5589</TD></TR>
</TABLE>
==Top five exon count genes==
<TABLE BORDER=1>
<TR><TH>db</TH><TH COLSPAN=5>gene name (exon count)</TH></TR>
<TR><TH>hg17</TH>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg17&position=chr2:152167362-152416454 NM_004543] (149)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg17&position=chr6:152534936-153050100 AF535142] (146)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg17&position=chr6:152534936-153050100 AF535142] (146)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg17&position=chr6:152534936-153050100 NM_033071] (146)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg17&position=chr6:152535028-153050648 AF495910] (146)</TD>
</TR>
<TR><TH>hg18</TH>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg18&position=chr14:105065300-106352275 uc001yrq.1] (2899)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg18&position=chr22:20715571-21595078 uc002zvw.1] (322)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg18&position=chr2:179098963-179380395 uc002umr.1] (313)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg18&position=chr2:88937988-89411302 uc002stk.1] (217)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg18&position=chr2:179098963-179380395 uc002umt.1] (194)</TD>
</TR>
<TR><TH>mm8</TH>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm8&position=chr2:76504822-76783386 NM_011652] (313)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm8&position=chr2:76504822-76783386 NM_028004] (192)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm8&position=chr9:108810681-108841812 NM_007738] (118)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm8&position=chr1:33956370-34252174 NM_134448] (99)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm8&position=chr4:122852022-123186663 DQ067088] (99)</TD>
</TR>
<TR><TH>mm9</TH>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr12:114498399-117248164 uc007pgj.1] (610)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr2:76542040-76820604 uc008kfn.1] (313)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr2:76542040-76820604 uc008kfo.1] (192)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr2:51992166-52194318 uc008jqv.1] (157)</TD>
    <TD>[http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr9:108855789-108886920 uc009rrh.1] (118)</TD>
</TR>
</TABLE>
</TABLE>

Revision as of 18:46, 14 September 2007

gene sets measured

  • hg17 - knownGenes version 2
  • hg18 - knownGenes version 3
  • mm8 - knownGenes version 2
  • mm9 - knownGenes version 3

The min, max and mean measurements are per gene

summary of gene and exon counts

dbgene
count
total exon
count
min exon
count
max exon
count
mean exon
count
hg1739368405720114910
hg1856722519308128999
mm831863314628131310
mm94922041711416108

summary of exon size statistics

dbsum exon
sizes
min exon
size
max exon
size
mean exon
size
hg17106840000118172263
hg18146371000136861282
mm883159100417497264
mm9117671000129698282

summary of intron size statistics

dbsum intron
sizes
min intron
size
max intron
size
mean intron
size
hg172223220000610964506069
hg182784920000110473206023
mm81476080000913475505220
mm92055500000112534305589

Top five exon count genes

dbgene name (exon count)
hg17 NM_004543 (149) AF535142 (146) AF535142 (146) NM_033071 (146) AF495910 (146)
hg18 uc001yrq.1 (2899) uc002zvw.1 (322) uc002umr.1 (313) uc002stk.1 (217) uc002umt.1 (194)
mm8 NM_011652 (313) NM_028004 (192) NM_007738 (118) NM_134448 (99) DQ067088 (99)
mm9 uc007pgj.1 (610) uc008kfn.1 (313) uc008kfo.1 (192) uc008jqv.1 (157) uc009rrh.1 (118)