File list
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | User | Description | Versions |
|---|---|---|---|---|---|---|
| 11:36, 29 March 2010 | HydraOpBlast.jpg (file) |  |
127 KB | Tomemerald | 1 | |
| 06:07, 20 March 2010 | ABRF2010 UCSC NGS.pdf (file) |  |
139 KB | AngieHinrichs | backup in case workshop internet fails | 1 |
| 06:07, 20 March 2010 | ABRF2010 UCSC NGS.ppt (file) |  |
6.5 MB | AngieHinrichs | backup in case workshop internet fails | 1 |
| 05:10, 20 March 2010 | ABRF2010 chr21 export baseQual.png (file) |  |
2 KB | AngieHinrichs | checkpoint image for demo/tutorial at ABRF 2010 workshop | 1 |
| 05:07, 20 March 2010 | ABRF2010 chr21 export grayQual.png (file) |  |
2 KB | AngieHinrichs | checkpoint image for demo/tutorial at ABRF 2010 workshop | 1 |
| 05:04, 20 March 2010 | ABRF2010 chr21 export 1MB.png (file) |  |
1 KB | AngieHinrichs | checkpoint image for demo/tutorial at ABRF 2010 workshop | 1 |
| 04:58, 20 March 2010 | ABRF2010 TFBS.png (file) |  |
1 KB | AngieHinrichs | smaller still, sheesh | 3 |
| 04:47, 20 March 2010 | ABRF2010 redbinGt15.png (file) |  |
4 KB | AngieHinrichs | checkpoint image for demo/tutorial at ABRF 2010 workshop | 1 |
| 04:39, 20 March 2010 | ABRF2010 redbin 1.png (file) |  |
2 KB | AngieHinrichs | checkpoint image for demo/tutorial at ABRF 2010 workshop | 1 |
| 04:23, 20 March 2010 | ABRF2010 ggData.png (file) |  |
892 bytes | AngieHinrichs | smaller -- the original was getting transformed down to 800 pix wide, which still didn't fit very well in 1020-pix wide browser and looked fuzzy. | 2 |
| 18:31, 19 March 2010 | Hg17.customText.UCSC GGM SpecificCGIs.txt (file) |  |
257 bytes | Hiram | customText track definition for hg17 custom track: CGIs (specific) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 | 1 |
| 18:30, 19 March 2010 | Hg17.customText.UCSC GGM SensitiveCGIs.txt (file) | |
296 bytes | Hiram | customText track definition for hg17 custom track: CGIs (sensitive) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 | 1 |
| 18:29, 19 March 2010 | Hg17.customText.UCSC GGM CombinedEpigeneticScore.txt (file) | |
272 bytes | Hiram | customText track definition for hg17 custom track: Epigenetic score - Combined epigenetic score (high scores correspond to bona fide CpG islands) | 1 |
| 18:28, 19 March 2010 | Hg17.customText.UCSC GGM BalancedCGIs.txt (file) | |
257 bytes | Hiram | customText track definition for hg17 custom track: CGIs (balanced) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 | 1 |
| 18:27, 19 March 2010 | Hg17.customText.UCSC GGM All.txt (file) | |
1 KB | Hiram | customText track definition for all five data sets UCSC GGM CpGs | 1 |
| 18:25, 19 March 2010 | Hg17.UCSC GGM SpecificCGIs.bb (file) | |
178 KB | Hiram | bigBed data for hg17 custom track: CGIs (specific) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 | 1 |
| 18:23, 19 March 2010 | Hg17.UCSC GGM SensitiveCGIs.bb (file) | |
686 KB | Hiram | bigBed data for hg17 custom track: CGIs (sensitive) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 | 1 |
| 18:22, 19 March 2010 | Hg17.UCSC GGM OptimizedScore.bb (file) | |
1.99 MB | Hiram | bigBed data for hg17 custom track: Optimized score - Optimized score (high scores correspond to bona fide CpG islands | 1 |
| 18:21, 19 March 2010 | Hg17.UCSC GGM CombinedEpigeneticScore.bb (file) | |
2.02 MB | Hiram | bigBed data for hg17 custom track: Epigenetic score - Combined epigenetic score (high scores correspond to bona fide CpG islands) | 1 |
| 18:19, 19 March 2010 | Hg17.UCSC GGM BalancedCGIs.bb (file) | |
389 KB | Hiram | bigBed data for hg17 custom track: CGIs (balanced) Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 | 1 |
| 18:07, 19 March 2010 | Hg18.customText.UCSC GGM CombinedEpigeneticScore.txt (file) | |
272 bytes | Hiram | customText for hg18 custom track: Combined epigenetic score (high scores correspond to bona fide CpG islands) | 1 |
| 18:06, 19 March 2010 | Hg18.customText.UCSC GGM SensitiveCGIs.txt (file) | |
259 bytes | Hiram | customText for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 | 1 |
| 18:05, 19 March 2010 | Hg18.customText.UCSC GGM SpecificCGIs.txt (file) | |
257 bytes | Hiram | customText for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 | 1 |
| 18:00, 19 March 2010 | Hg18.customText.UCSC GGM BalancedCGIs.txt (file) | |
257 bytes | Hiram | customText track definition for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 | 1 |
| 17:54, 19 March 2010 | Hg18.customText.UCSC GGM All.txt (file) | |
1 KB | Hiram | customText track statements to load all five UCSC_GGM CpG custom tracks | 2 |
| 17:30, 19 March 2010 | Hg18.UCSC GGM SpecificCGIs.bb (file) | |
178 KB | Hiram | bigBed data for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 | 1 |
| 17:30, 19 March 2010 | Hg18.UCSC GGM SensitiveCGIs.bb (file) | |
686 KB | Hiram | bigBed data for custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 | 1 |
| 17:28, 19 March 2010 | Hg18.UCSC GGM OptimizedScore.bb (file) | |
1.99 MB | Hiram | bigBed data for hg18 custom track: Optimized score (high scores correspond to bona fide CpG islands) | 1 |
| 17:28, 19 March 2010 | Hg18.UCSC GGM CombinedEpigeneticScore.bb (file) | |
2.02 MB | Hiram | bigBed data for hg18 custom track: Combined epigenetic score (high scores correspond to bona fide CpG islands) | 1 |
| 17:27, 19 March 2010 | Hg18.UCSC GGM BalancedCGIs.bb (file) | |
389 KB | Hiram | bigBed data for custom track of Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 | 1 |
| 02:17, 13 March 2010 | EncodeKent3.gif (file) |  |
23 KB | Kuhn | Multiple histone marks. | 1 |
| 02:17, 13 March 2010 | EncodeKent2.gif (file) |  |
24 KB | Kuhn | Premature stop in reference assembly. | 1 |
| 02:16, 13 March 2010 | EncodeKent1.gif (file) |  |
16 KB | Kuhn | Tier 1 cell lines. | 1 |
| 05:08, 11 March 2010 | EncodeKent1.jpg (file) |  |
72 KB | Kuhn | 1 | |
| 13:42, 6 March 2010 | TMTsurvivors.png (file) |  |
36 KB | Tomemerald | 15 | |
| 21:31, 3 February 2010 | CoordinatedSplicing.ppt (file) | |
6.4 MB | Melissacline | 1 | |
| 16:02, 2 February 2010 | AromatLock.jpg (file) |  |
20 KB | Tomemerald | 1 | |
| 13:29, 31 January 2010 | CilOpDecline.jpg (file) |  |
70 KB | Tomemerald | 5 | |
| 14:44, 29 January 2010 | TMTgeneTree2.jpg (file) |  |
41 KB | Tomemerald | 2 | |
| 13:14, 22 January 2010 | GabgComplexity.jpg (file) |  |
41 KB | Tomemerald | 2 | |
| 14:12, 18 January 2010 | Nasonia.jpg (file) |  |
14 KB | Tomemerald | 1 | |
| 12:47, 18 January 2010 | Varroa.jpg (file) |  |
36 KB | Tomemerald | 1 | |
| 15:51, 16 January 2010 | CtenOpsinPics.jpg (file) |  |
67 KB | Tomemerald | 1 | |
| 13:18, 13 January 2010 | IntronsMelHEK.jpg (file) |  |
488 KB | Tomemerald | 2 | |
| 14:54, 11 January 2010 | IntronsGPCRparental.jpg (file) |  |
30 KB | Tomemerald | 1 | |
| 13:02, 11 January 2010 | MelAncIntrons.jpg (file) |  |
64 KB | Tomemerald | 2 | |
| 15:06, 9 January 2010 | IntronsPerAnc.jpg (file) |  |
53 KB | Tomemerald | 1 | |
| 13:08, 8 January 2010 | IntronsCilAnc.jpg (file) |  |
71 KB | Tomemerald | 3 | |
| 18:32, 7 January 2010 | RetrUcscGenomes.txt (file) | |
3 KB | Max | python scripts to download newest version of all 2bit genome files from UCSC with rsync | 2 |
| 12:57, 6 January 2010 | BranchioJoeHes.jpg (file) |  |
32 KB | Tomemerald | 1 |
