Genbank updates
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To disable genbank updates to an assembly:
In addition to removing the assembly name from the hgwbeta.dbs and rr.dbs files, the files here need to be removed:
/cluster/data/genbank/data/ftp/
Otherwise the genbank files will keep reappearing.
So, to disable a genome:
-> on hgwdev remove the assembly name from these files:
~/kent/src/hg/makeDb/genbank/etc/hgwbeta.dbs
~/kent/src/hg/makeDb/genbank/etc/rr.dbs
please remove the name, don't comment it out, cvs keeps the file edit history.
-> cvs update in this directory (cvs up -dP /cluster/data/genbank/etc)
-> ssh hgwbeta
-> cd /genbank/etc
-> cvs update /genbank/etc on hgwbeta (cvs up -dP)
-> cd to /cluster/data/genbank/data/ftp/${assembly}
-> remove /cluster/data/genbank/data/ftp/${assembly}
-> remove files on hgdownload by sending a push request to drop this directory and its contents:
/usr/local/apache/htdocs/goldenPath/${assembly}