Genbank updates
From genomewiki
Jump to navigationJump to search
To disable genbank updates to an assembly:
In addition to removing the assembly name from the hgwbeta.dbs and rr.dbs files, the files here need to be removed:
/cluster/data/genbank/data/ftp/
Otherwise the genbank files will keep reappearing.
So, to disable a genome:
-> on hgwdev remove the assembly name from these files: ~/kent/src/hg/makeDb/genbank/etc/hgwbeta.dbs ~/kent/src/hg/makeDb/genbank/etc/rr.dbs and commit. Please remove the name, don't comment it out, git keeps the file edit history. -> ssh hgwbeta -> cd ~/kent/src/hg/makeDb/genbank -> git pull -> make etc-update-rr -> cd to /cluster/data/genbank/data/ftp/${assembly} -> remove /cluster/data/genbank/data/ftp/${assembly} -> remove files on hgdownload by sending a push request to drop this directory and its contents: /usr/local/apache/htdocs/goldenPath/${assembly}