Hg19 conservation lastz parameters

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Revision as of 23:27, 20 May 2009 by Hiram (talk | contribs) (updated status)
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do not edit, automatically generated table

query abridged
repeats(no)
M(40M)K(3000) L(3000)QY(9400) program
run
E(30)H(0) O(400)T(1) chain table
date
% of hg19
matched
(chainLink table)
Chimp panTro2 no25445003000human_chimp.v2.q 15000lastz15006002 2009-03-2094.846%
Gorilla gorGor1 no25445003000human_chimp.v2.q 15000lastz15006002 2009-03-2259.484%
Orangutan ponAbe2 no25445003000human_chimp.v2.q 15000lastz15006002 2009-05-1491.350%
Rhesus rheMac2 no25445003000human_chimp.v2.q 15000lastz15006002 2009-05-1482.744%
Baboon papHam1 no25445003000human_chimp.v2.q 15000lastz15006002 in progressin progress
Marmoset calJac1 no25445003000human_chimp.v2.q 15000lastz15006002 2009-05-14in progress
Tarsier tarSyr1 no40M30003000default 9400lastz3004001 2009-05-15in progress
Bushbaby otoGar1 no40M30003000default 9400lastz3004001 2009-05-15in progress
Mouse lemur micMur1 no40M30003000default 9400lastz3004001 in progressin progress
TreeShrew tupBel1 TBD
Shrew sorAra1 TBD
Mouse mm9 yes40M30003000default 9400lastz3004001 2009-05-1335.299%
Rat rn4 yes40M30003000default 9400lastz3004001 2009-05-1332.879%
Squirrel speTri1 no40M30003000default 9400lastz3004001 2009-05-1535.712%
Guinea Pig cavPor3 no40M30003000default 9400lastz3004001 2009-05-19N/A
Rabbit oryCun1 TBD
Pika ochPri2 TBD
Hedgehog eriEur1 TBD
Cat felCat3 no40M30003000default 9400lastz3004001 2009-05-1435.717%
Dog canFam2 yes40M30003000default 9400lastz3004001 2009-05-1452.879%
Horse equCab2 TBD
Alpaca vicPac1 TBD
Megabat pteVam1 TBD
Microbat myoLuc1 TBD
Dolphin turTru1 TBD
Cow bosTau4 TBD
Sloth choHof1 TBD
Kangaroo rat dipOrd1 TBD
Rock hyrax proCap1 TBD
Wallaby macEug1 TBD
Armadillo dasNov1 TBD
Tenrec echTel1 TBD
Elephant loxAfr2 TBD
Armadillo dasNov2 TBD
Opossum monDom5 TBD
Platypus ornAna1 TBD
Chicken galGal3 yes40M220010000HoxD55.q 3400lastz3020004001 2009-05-143.591%
Zebra finch taeGut1 TBD
Lizard anoCar1 TBD
X. tropicalis xenTro2 TBD
Zebrafish danRer5 TBD
Tetraodon tetNig1 no5022006000HoxD55.q 3400lastz3004001 2009-05-142.003%
Fugu fr2 no5022006000HoxD55.q 3400lastz3004001 in progressin progress
Stickleback gasAcu1 no5022006000HoxD55.q 3400lastz3004001 2009-05-141.916%
Medaka oryLat2 TBD
Lamprey petMar1 no5022006000HoxD55.q 3400lastz3004001 2009-05-14in progress