Genbank updates
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To disable genbank updates to an assembly:
In addition to removing the assembly name from the hgwbeta.dbs and rr.dbs files, the files here need to be removed:
/cluster/data/genbank/data/ftp/
Otherwise the genbank files will keep reappearing.
So, to disable a genome:
-> on hgwdev remove the assembly name from these files: ~/kent/src/hg/makeDb/genbank/etc/hgwbeta.dbs ~/kent/src/hg/makeDb/genbank/etc/rr.dbs please remove the name, don't comment it out, cvs keeps the file edit history. -> cvs update in this directory (cvs up -dP /cluster/data/genbank/etc) -> ssh hgwbeta -> cd /genbank/etc -> cvs update /genbank/etc on hgwbeta (cvs up -dP) -> cd to /cluster/data/genbank/data/ftp/${assembly} -> remove /cluster/data/genbank/data/ftp/${assembly} -> remove files on hgdownload by sending a push request to drop this directory and its contents: /usr/local/apache/htdocs/goldenPath/${assembly}