User contributions for Max

7 April 2010

• 09:5309:53, 7 April 2010 diff hist −266‎ Learn about the Browser ‎ →‎Install a copy of the browser on your own machine (Unix or Mac)

1 April 2010

• 16:1316:13, 1 April 2010 diff hist −10‎ Browser Installation ‎ →‎Download database tables
• 10:5310:53, 1 April 2010 diff hist +119‎ Browser Installation ‎ →‎Outline

31 March 2010

• 17:2917:29, 31 March 2010 diff hist +1,263‎ N Xref in Ensembl ‎ New page: * Xrefs can be linked from the transcript or from the peptide * To list all external identifiers for a given gene in the external DB called XXXX ** via gene -> transcript -> object_xref ->... current
• 17:2417:24, 31 March 2010 diff hist +2‎ The Ensembl Browser ‎No edit summary
• 17:2317:23, 31 March 2010 diff hist +73‎ The Ensembl Browser ‎No edit summary

25 March 2010

• 17:5117:51, 25 March 2010 diff hist +129‎ Learn about the Browser ‎ →‎Compile the UCSC source tree and analyze genomes yourself

24 March 2010

• 10:4810:48, 24 March 2010 diff hist +28‎ N Frequently asked questions ‎ Redirecting to Inofficial FAQ current
• 10:4710:47, 24 March 2010 diff hist −4‎ Gene id conversion ‎ →‎With the UCSC Browser
• 10:4610:46, 24 March 2010 diff hist +17‎ Gene id conversion ‎ →‎With the UCSC Browser
• 10:4510:45, 24 March 2010 diff hist +9‎ Gene id conversion ‎ →‎With the UCSC Browser
• 10:4310:43, 24 March 2010 diff hist −4‎ Gene id conversion ‎ →‎With the UCSC Browser
• 10:4310:43, 24 March 2010 diff hist −5‎ Gene id conversion ‎ →‎With the UCSC Browser
• 10:4110:41, 24 March 2010 diff hist +25‎ Gene id conversion ‎No edit summary
• 10:4110:41, 24 March 2010 diff hist +2,834‎ Gene id conversion ‎No edit summary
• 10:3910:39, 24 March 2010 diff hist +42‎ Inofficial FAQ ‎No edit summary current
• 10:3110:31, 24 March 2010 diff hist +1,270‎ N Extract promoters ‎ New page: To extract estimated promoter regions for the whole genome, select a track to base the analysis on (UCSC Genes, RefSeq Genes, etc.), then use the Table browser. Select output=sequence, seq... current
• 10:3110:31, 24 March 2010 diff hist +36‎ N Inofficial FAQ ‎ New page: How do I... * Extract promoters
• 10:0310:03, 24 March 2010 diff hist +81‎ Learn about the Browser ‎ →‎Developing with the UCSC API
• 10:0210:02, 24 March 2010 diff hist −36‎ Debugging cgi-scripts ‎No edit summary
• 10:0210:02, 24 March 2010 diff hist +144‎ N Debugging cgi-scripts ‎ New page: * [https://lists.soe.ucsc.edu/pipermail/genome-mirror/2010-March/001677.html post by Angie] that describes how to debug the cgi-scripts with gdb
• 10:0010:00, 24 March 2010 diff hist +64‎ Learn about the Browser ‎No edit summary

22 March 2010

• 15:1915:19, 22 March 2010 diff hist +17‎ Learn about the Browser ‎ →‎Modify your own copy of the browser
• 15:1515:15, 22 March 2010 diff hist +110‎ Learn about the Browser ‎ →‎Modify your own copy of the browser
• 15:1315:13, 22 March 2010 diff hist −115‎ Learn about the Browser ‎ →‎Install a copy of the browser on your own machine (Unix or Mac)

18 March 2010

• 11:1811:18, 18 March 2010 diff hist +46‎ Whole genome alignment howto ‎ →‎Fileformats
• 11:1811:18, 18 March 2010 diff hist +137‎ Whole genome alignment howto ‎ →‎Fileformats

13 March 2010

• 01:0101:01, 13 March 2010 diff hist +8‎ Browser Installation ‎ →‎Get Executables
• 01:0101:01, 13 March 2010 diff hist +167‎ Browser Installation ‎ →‎Get Executables
• 00:4200:42, 13 March 2010 diff hist +40‎ Browser Installation ‎ →‎Setup hg.conf

11 March 2010

• 20:0720:07, 11 March 2010 diff hist +9‎ Browser Installation ‎ →‎Installing a Browser Mirror
• 20:0420:04, 11 March 2010 diff hist +143‎ Browser Installation ‎ →‎If it doesn't work...
• 20:0320:03, 11 March 2010 diff hist −6‎ Browser Installation ‎ →‎Obtain the /gbdb data file area
• 20:0120:01, 11 March 2010 diff hist +80‎ Browser Installation ‎ →‎Outline
• 20:0020:00, 11 March 2010 diff hist +1‎ Browser Installation ‎ →‎Installing a Browser Mirror
• 20:0020:00, 11 March 2010 diff hist −59‎ Browser Installation ‎ →‎Installing a Browser Mirror
• 19:5719:57, 11 March 2010 diff hist +73‎ Browser Mirrors ‎No edit summary

10 March 2010

• 19:4319:43, 10 March 2010 diff hist +1,712‎ Blat-FAQ ‎No edit summary

8 March 2010

• 20:1720:17, 8 March 2010 diff hist +59‎ Browser Installation ‎ →‎Prerequisites
• 20:1620:16, 8 March 2010 diff hist +288‎ Browser Installation ‎ →‎Prerequisites: space requriements
• 20:1420:14, 8 March 2010 diff hist +62‎ Learn about the Browser ‎ →‎Install a copy of the browser on your own machine (Unix or Mac)
• 18:1918:19, 8 March 2010 diff hist −246‎ Blat-FAQ ‎ →‎Memory consumption
• 18:1818:18, 8 March 2010 diff hist −16‎ Blat-FAQ ‎No edit summary
• 18:1618:16, 8 March 2010 diff hist +1,308‎ Blat-FAQ ‎No edit summary
• 09:0809:08, 8 March 2010 diff hist +40‎ Learn about the Browser ‎ →‎Compile the UCSC source tree and analyze genomes yourself

5 March 2010

• 09:3409:34, 5 March 2010 diff hist +67‎ Browser Installation ‎ →‎Create a "trash" directory
• 09:3309:33, 5 March 2010 diff hist +137‎ Browser Installation ‎ →‎Create a "trash" directory
• 09:3109:31, 5 March 2010 diff hist 0‎ Browser Installation ‎ →‎Outline
• 09:3109:31, 5 March 2010 diff hist 0‎ Browser Installation ‎ →‎Outline
• 09:3109:31, 5 March 2010 diff hist +36‎ Browser Installation ‎ →‎Outline