User contributions for Marygoldman

8 February 2011

• 01:5401:54, 8 February 2011 diff hist +265‎ Releasing an assembly ‎ →‎You may need to update all.joiner for the RR
• 01:5201:52, 8 February 2011 diff hist +60‎ Releasing an assembly ‎ →‎Update hgcentral.sql for mirrors
• 01:5001:50, 8 February 2011 diff hist −109‎ Releasing an assembly ‎ →‎Announce the Release on genome@soe.ucsc.edu and genecats@soe.ucsc.edu
• 01:4901:49, 8 February 2011 diff hist +100‎ Releasing an assembly ‎ →‎Push Static Content from hgwdev to hgwbeta and Round Robin
• 01:4701:47, 8 February 2011 diff hist −95‎ Releasing an assembly ‎ →‎Push Static Content from hgwdev to hgwbeta and Round Robin
• 01:4601:46, 8 February 2011 diff hist +116‎ Releasing an assembly ‎ →‎Figure out if either you or Donna is going to edit the static docs
• 01:4401:44, 8 February 2011 diff hist +44‎ Releasing an assembly ‎ →‎Turn on genome-mysql
• 01:4001:40, 8 February 2011 diff hist −57‎ Releasing an assembly ‎ →‎Confirm that downloads and currentGenome are functional
• 01:4001:40, 8 February 2011 diff hist +60‎ Releasing an assembly ‎ →‎Update/Add symlink in /usr/local/apache/htdocs-hgdownload/goldenPath/currentGenomes
• 01:3901:39, 8 February 2011 diff hist +55‎ Releasing an assembly ‎ →‎Push Downloads from hgwdev to hgdownload
• 01:3801:38, 8 February 2011 diff hist +1‎ Releasing an assembly ‎ →‎Update/Add symlink in /usr/local/apache/htdocs-hgdownload/goldenPath/currentGenomes
• 01:3601:36, 8 February 2011 diff hist +41‎ Releasing an assembly ‎ →‎Remove assembly from mirror "exclude" list
• 01:3501:35, 8 February 2011 diff hist +65‎ Releasing an assembly ‎ →‎Verify again that everything is working as expected on the RR
• 01:3501:35, 8 February 2011 diff hist −82‎ Releasing an assembly ‎ →‎Enable Assembly on RR and post-release follow-up
• 01:3401:34, 8 February 2011 diff hist +61‎ Releasing an assembly ‎ →‎Chain/Nets to other organisms
• 01:3101:31, 8 February 2011 diff hist +72‎ Releasing an assembly ‎ →‎Set active=1 in hgcentral
• 01:3001:30, 8 February 2011 diff hist −17‎ Releasing an assembly ‎ →‎Test the assembly tracks, BLAT and PCR on the RR
• 01:2401:24, 8 February 2011 diff hist −44‎ Releasing an assembly ‎ →‎Request dump and autodump of database
• 01:2201:22, 8 February 2011 diff hist −37‎ Releasing an assembly ‎ →‎Turn on genbank updates on the RR
• 01:2201:22, 8 February 2011 diff hist +147‎ Releasing an assembly ‎ →‎Turn on genbank updates on the RR
• 01:2001:20, 8 February 2011 diff hist −7‎ Releasing an assembly ‎ →‎Update hgcentral
• 01:1901:19, 8 February 2011 diff hist +201‎ Releasing an assembly ‎ →‎Update hgcentral
• 01:1501:15, 8 February 2011 diff hist −1‎ Releasing an assembly ‎ →‎rsync /gbdb again as necessary
• 01:1401:14, 8 February 2011 diff hist −1‎ Releasing an assembly ‎ →‎Request rsync of entire database from push-request
• 01:1401:14, 8 February 2011 diff hist +100‎ Releasing an assembly ‎ →‎Request rsync of entire database from push-request
• 01:1101:11, 8 February 2011 diff hist −2‎ Releasing an assembly ‎ →‎Adjust the release log in main pushQ
• 01:1101:11, 8 February 2011 diff hist +7‎ Releasing an assembly ‎ →‎Email warning genome-mirror at least 24 hours before release
• 01:1001:10, 8 February 2011 diff hist +9‎ Releasing an assembly ‎ →‎Make sure no tables need to be repushed from hgwdev to hgwbeta
• 01:0901:09, 8 February 2011 diff hist +135‎ Releasing an assembly ‎ →‎Stage assembly on Round Robin
• 01:0401:04, 8 February 2011 diff hist +140‎ Releasing an assembly ‎ →‎Verify that liftOvers are in liftOvers directories and not in vs* Directories
• 01:0101:01, 8 February 2011 diff hist −13‎ Releasing an assembly ‎ →‎Verify downloads
• 00:5800:58, 8 February 2011 diff hist +42‎ Releasing an assembly ‎ →‎Check Blat and PCR
• 00:5500:55, 8 February 2011 diff hist +1‎ Releasing an assembly ‎ →‎Check that all of the MySQL tables are in good repair
• 00:5400:54, 8 February 2011 diff hist +2‎ Releasing an assembly ‎ →‎Check to make sure that none of the table names have underscores(_)
• 00:5400:54, 8 February 2011 diff hist −7‎ Releasing an assembly ‎ →‎Run featureBits to verify that the gold and gap tables together cover the entire genome
• 00:5300:53, 8 February 2011 diff hist −1‎ Releasing an assembly ‎ →‎Check indices
• 00:5200:52, 8 February 2011 diff hist +31‎ Releasing an assembly ‎ →‎Check indices
• 00:5000:50, 8 February 2011 diff hist +1‎ Releasing an assembly ‎ →‎Check that all tables in this database are mentioned in all.joiner
• 00:5000:50, 8 February 2011 diff hist +4‎ Releasing an assembly ‎ →‎joinerCheck
• 00:2600:26, 8 February 2011 diff hist −3‎ Releasing an assembly ‎ →‎Turn on GenBank updates
• 00:2000:20, 8 February 2011 diff hist +1‎ m Releasing an assembly ‎ →‎Check that all 3 copies of the .2bit file (gbdb, downloads, blat servers) are identical
• 00:2000:20, 8 February 2011 diff hist +103‎ Releasing an assembly ‎ →‎Review phylogenetic location in pull-down menus on hgGateway
• 00:1800:18, 8 February 2011 diff hist −6‎ m Releasing an assembly ‎ →‎Test on hgwbeta: re-ordering list
• 00:1600:16, 8 February 2011 diff hist +6‎ Releasing an assembly ‎ →‎Check the .2bit files
• 00:1300:13, 8 February 2011 diff hist −1‎ m Releasing an assembly ‎ →‎Push /gbdb/$db and html/description.html=
• 00:1300:13, 8 February 2011 diff hist −25‎ Releasing an assembly ‎ →‎Push files
• 00:0900:09, 8 February 2011 diff hist −4‎ Releasing an assembly ‎ →‎=genomeClade and gdbPdb
• 00:0800:08, 8 February 2011 diff hist −2‎ Releasing an assembly ‎ →‎genomeClade and gdbPdb

7 February 2011

• 23:5823:58, 7 February 2011 diff hist −3‎ Releasing an assembly ‎ →‎blatServers
• 23:4923:49, 7 February 2011 diff hist +28‎ Releasing an assembly ‎ →‎blatServers