User contributions for Hiram

18 May 2018

• 16:5316:53, 18 May 2018 diff hist 0‎ File:Mm10.grcIncidentDb.bb ‎ Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb

11 May 2018

• 16:5316:53, 11 May 2018 diff hist 0‎ File:Mm9.grcIncidentDb.bb ‎ Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb

4 May 2018

• 16:3316:33, 4 May 2018 diff hist 0‎ File:Mm9.grcIncidentDb.bb ‎ Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
• 16:3316:33, 4 May 2018 diff hist 0‎ File:Mm10.grcIncidentDb.bb ‎ Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb

3 May 2018

• 16:3316:33, 3 May 2018 diff hist 0‎ File:Mm9.grcIncidentDb.bb ‎ Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
• 16:3316:33, 3 May 2018 diff hist 0‎ File:Mm10.grcIncidentDb.bb ‎ Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb

2 May 2018

• 16:3316:33, 2 May 2018 diff hist 0‎ File:Mm9.grcIncidentDb.bb ‎ Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
• 16:3316:33, 2 May 2018 diff hist 0‎ File:Mm10.grcIncidentDb.bb ‎ Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb

28 April 2018

• 17:5017:50, 28 April 2018 diff hist +53‎ File:SizeVsTime.png ‎ adding category tags current
• 17:4917:49, 28 April 2018 diff hist +53‎ File:LastzProcessingTimeHistogram.png ‎ adding category tags current
• 17:3017:30, 28 April 2018 diff hist +1‎ m Cluster Jobs ‎ →‎Sick batch
• 17:2617:26, 28 April 2018 diff hist +103‎ Parasol job control system ‎ add pointer to cluster jobs guidelines
• 17:1617:16, 28 April 2018 diff hist +110‎ DoBlastzChainNet.pl ‎ →‎Parasol Job Control System
• 17:1017:10, 28 April 2018 diff hist +69‎ DoBlastzChainNet.pl ‎ →‎Compute resources
• 17:0917:09, 28 April 2018 diff hist +303‎ N File:LastzProcessingTimeHistogram.png ‎ lastz cluster compute time histogram 1,635 measurements from alignments performed at UCSC 459 measurements are less than 0.05 days (less than 1 hour) due to very small genome sizes 59 measurements are longer than 5 days processing time due to high c...
• 17:0517:05, 28 April 2018 diff hist +129‎ File:SizeVsTime.png ‎No edit summary
• 17:0417:04, 28 April 2018 diff hist +537‎ DoBlastzChainNet.pl ‎ add compute resources

27 April 2018

• 23:1323:13, 27 April 2018 diff hist +213‎ N File:SizeVsTime.png ‎ lastz cluster run processing time vs. genome size blue points plot times 2 days or less processing time, left axis scale 0 - 2 days red points plot times over 2 days processing time, right axis scale 0 - 70 days

26 April 2018

• 15:2915:29, 26 April 2018 diff hist +374‎ LiftOver Howto ‎ added note about the scripts now available current
• 15:2015:20, 26 April 2018 diff hist 0‎ Whole genome alignment howto ‎ →‎2018 UPDATE NOTE
• 15:2015:20, 26 April 2018 diff hist 0‎ Whole genome alignment howto ‎ corrected doBlastzChainNet.pl
• 15:1815:18, 26 April 2018 diff hist 0‎ Minimal Steps For LiftOver ‎ corrected doBlastzChainNet.pl current
• 15:1715:17, 26 April 2018 diff hist +33‎ N DoChainNetBlastz.pl ‎ Hiram moved page DoChainNetBlastz.pl to DoBlastzChainNet.pl: previous title was incorrect current
• 15:1715:17, 26 April 2018 diff hist 0‎ m DoBlastzChainNet.pl ‎ Hiram moved page DoChainNetBlastz.pl to DoBlastzChainNet.pl: previous title was incorrect
• 15:1415:14, 26 April 2018 diff hist −1‎ DoBlastzChainNet.pl ‎ corrected command
• 15:1315:13, 26 April 2018 diff hist +374‎ Minimal Steps For LiftOver ‎ add redirect note to completed scripts
• 15:0615:06, 26 April 2018 diff hist +53‎ Same species lift over construction ‎ add category tags current
• 15:0515:05, 26 April 2018 diff hist +326‎ Same species lift over construction ‎ adding note to see new page for this procedure
• 00:2200:22, 26 April 2018 diff hist +24‎ DoSameSpeciesLiftOver.pl ‎ capture script output in do.log
• 00:2000:20, 26 April 2018 diff hist +2,681‎ DoSameSpeciesLiftOver.pl ‎ show result files, scripts used and cluster job run times

25 April 2018

• 22:4122:41, 25 April 2018 diff hist +767‎ DoSameSpeciesLiftOver.pl ‎ running the command
• 22:3122:31, 25 April 2018 diff hist +40‎ DoSameSpeciesLiftOver.pl ‎ add NCBI assembly link
• 22:3022:30, 25 April 2018 diff hist +120‎ DoSameSpeciesLiftOver.pl ‎ note about bin/blat
• 22:2822:28, 25 April 2018 diff hist −252‎ DoSameSpeciesLiftOver.pl ‎ no need to mention lastz here
• 22:2722:27, 25 April 2018 diff hist +135‎ DoSameSpeciesLiftOver.pl ‎ adding kent informatics
• 21:4821:48, 25 April 2018 diff hist +1,483‎ DoSameSpeciesLiftOver.pl ‎ ooc file construction
• 21:1521:15, 25 April 2018 diff hist +2,142‎ DoSameSpeciesLiftOver.pl ‎ Obtain genome sequences and working directories
• 20:3120:31, 25 April 2018 diff hist +53‎ DoSameSpeciesLiftOver.pl ‎ add category tags
• 20:3020:30, 25 April 2018 diff hist +3,385‎ N DoSameSpeciesLiftOver.pl ‎ initial contents copied from doBlastzChainNet.pl
• 16:0816:08, 25 April 2018 diff hist +173‎ Parasol job control system ‎ add licensing
• 16:0716:07, 25 April 2018 diff hist +173‎ DoBlastzChainNet.pl ‎ add licensing

23 April 2018

• 16:3316:33, 23 April 2018 diff hist +99‎ Nm User:Bwolford ‎ Creating user page for new user. current

19 April 2018

• 16:3316:33, 19 April 2018 diff hist 0‎ File:Mm9.grcIncidentDb.bb ‎ Hiram uploaded a new version of File:Mm9.grcIncidentDb.bb
• 16:3316:33, 19 April 2018 diff hist 0‎ File:Mm10.grcIncidentDb.bb ‎ Hiram uploaded a new version of File:Mm10.grcIncidentDb.bb
• 16:3316:33, 19 April 2018 diff hist 0‎ File:Hg38.grcIncidentDb.bb ‎ Hiram uploaded a new version of File:Hg38.grcIncidentDb.bb

16 April 2018

• 21:3221:32, 16 April 2018 diff hist +316‎ Open Stack Parasol Installation ‎ →‎Prerequisites
• 21:2721:27, 16 April 2018 diff hist +145‎ Parasol job control system ‎ add see also
• 21:2421:24, 16 April 2018 diff hist +33‎ Open Stack Parasol Installation ‎ →‎Parasol Hub
• 21:2121:21, 16 April 2018 diff hist +569‎ Open Stack Parasol Installation ‎ →‎Parasol nodes
• 21:1021:10, 16 April 2018 diff hist +1,679‎ Open Stack Parasol Installation ‎ →‎Parasol nodes