Cryptochrome refSeqs

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See also: Comparative genomics analysis of cryptochromes and photolyases

Introduction: curated metazoan cryptochrome and photolyase sequences

The 247 metazoan cryptochrome and photolyase reference sequences provided here are hand-curated for greater accuracy. This is necessary because many full length genes are in effect sequenced but are not listed as such at GenBank. And when predicted by unsupervised bioinformatic algorithms, the resulting gene models are too often unacceptably inaccurate -- offering erroneous start codons, missing internal exons, fabricating exon boundaries in gappy regions, not seeing diverged or very short exons at all, not correcting for obvious homopolymer run frameshift errors, running out penultimate exons to the next stop codon and not synergistically utilizing pre-existing homological data.

Comparative genomic analysis of a gene family cannot be built upon a rotten foundation of faulty sequences -- this leads only to further rubbish. The method of curation used here is complex but optimal. It begins with a seed set of thoroughly studied experimental sequences in model species where there is no doubt about completeness of the sequence nor its accuracy. Using the four main divisions of GenBank (nr, ESTs, transcriptome projects, whole genome assemblies), the seed set is slowly expanded with additional representatives in closely related species that share homology, syntenic location and exon pattern.

The build-out of the reference sequence collection grows recursively in accuracy because of three independent tools: an ever-growing blast classifier, a phylogenetically aware protein multi-aligner, and a pre-computed phylogenetic overview of neighboring genes. The classifier allows homologs extracted from raw dna contigs to be modeled by the closest available reference sequence. The multi-aligner highlights anomalies in the sequence collection that required additional curational focus. The synteny browser is often correct even when its underlying gene models are somewhat flawed.

However a set of sequences can never be perfect because of errors in GenBank data (flawed read data, mis-assembled contigs, gaps, truncations, submission blunders), actual mutations in the individual animal representing its species, high levels of polymorphism, unsuspected hybridization, erroneous taxonomuy, lineage sorting, horizontal gene transfer, extreme divergence in short exons leading to unrecognizability, and inevitable data handling errors.

Contaminated DNA is a signficant problem in GenBank entries. This can arise somewhat excusably from embeded viruses, endosymbionts, commensuals or parasites not being cleanly separated from target organism, but less excusably from DNA contamination by species previously sequenced in the same lab (eg, DNA from the Lottia genome project contaminated sponge, the next project at JGI). It is not unusual to find tuna sandwich or chicken salad DNA in older mammalian projects. Horizontal gene transfer must also be considered when a sequence does not fit into its phylogenetic niche. And some clades, such as tunicates and nematodes, just evolve so rapidly that hardly any of their sequences sit informatively.

The focus here is entirely on metazoan sequences -- sponge to human -- and homologs are provided only for intensively studied model species such as Arabidopsis, for other eukaryotes when an outgroup is helpful, and for prokaryotic species where the fold has been determined. The important class of 4Fe-4S photolyases occurs only in prokaryotes so an exception was made there. A few primases are also included because of deep fold homology to photolyases.

Because of multiple events of gene duplication, followed by accelerated divergence and sometimes much later loss in various lineages, orthologous correspondences are not so straightforward. Because it is not feasible to experimentally study every gene in every species, it is imperative to establish orthology to enable annotation transfer. That give far more accurate outcomes for orthologs than across paralogs -- and when it doesn't, unsuspected events of convergent evolution are discovered.

By definition, two genes in two species are orthologous only when they are vertically descended from a single gene in their last common ancestor. Orthology is strictly genetic -- its definition makes no reference to function. Orthologs can and do drift in exon number and position, cofactors, post-translational modifications, cellular location, tissue of expression, protein binding partners, substrates and products, catalytic capacity, and regulation of their transcription. However, mostly they don't -- a gene can persist for trillions of years of cumulative unique branch length with very few changes in any attribute. Annotation transfer to orthologs is not only parsimonious but it often works (and so serves as default hypothesis).

The three main tools for determining orthology are sequence relatedness, conserved position and phase of introns, and retention of syntenic chromosomal position. These tools are independent of each other, so any model of orthology relationships must be compatible with -- and fully utilize the information in -- all three. In other words, best reciprocal blast alone is a really poor idea.

Previous efforts in the comparative genomics of cryptochromes are not reviewed here. These have floundered on the twin shoals of overly sparse phylogenetic sampling relative to gene duplication event rate and use of copy/paste likelihood tools making many simplifying but unwarranted assumptions about the lack of clade-specific variations in the tempo and mode of nucleotide evolution over a vast evolutionary time span involved. Simple blast clustering in the classifier accomplishes the same thing at far greater speed and transparency.

Since today the phylogenetic tree is geologically dated and topologically fixed, the individual gene trees -- which are commonly discrepant -- must be clamped (subordinated) to the species tree. After a gene duplication, if one copy retains parental location and main role, the other copy may re-functionalize and so evolve rapidly as it adapts better to its newly specialized role. This scenario can account for anomalies in gene trees and is likely applicable to the shift from repair enzyme to light sensor.

In the view of Piatigorsky, parental genes are multi-functional to beginso the duplicated copy has these pre-existing niches to take over (rather than thrashing around desperately for a function before it pseudogenizes due to lack of supportive selective pressure). All the gene duplications of cryptochromes within Bilatera are segmental, meaning upstream regulatory and enhancer regions were likely carried along, which is not the case with retropositioned gene copies which only duplicate processed transcripts.

The sequence collection is split from a companion analysis page for clarity. Not every conceivable cryptochrome gene fragment at GenBank is represented below; the intensity of curational effort grows in proportion to that needed to resolve evolutionary issues. For example, vertebrate CRY1 genes evolve very slowly in their main region but acquired additional terminal exons; the issue there is where those originated, what parts of them are conserved, and what are they doing. Here a terminal gene fragment from a phylogenetically critical position is more informative than infilling with main regions of a dozen more downstream species.

The sequences are provided in advanced fasta format -- parsed into exons, preceded by splice acceptor overhang, followed by splice donor coding phase, with lower case amino acids indicating uncertainty, spaces indicating gaps and coverage, and stop codon shown.

The sequences are grouped into ortholgous clusters, and presented in phylogenetic order relative to human. This does not determine order in subtrees (eg rodents) but there the order is fixed by assembly quality (eg mouse is best murid).

The fasta header lines are simple space-delimited databases showing first gene name, then genus, species, common name, accession number if not a simple genomic blat or whole genome alignment output, PubMed id if specifically studied in a journal article, followed by an unstructured comment field. The headers and exons are easily reformatted into a spreadsheet by replacing spaces and paragraph returns with tabs.

Here gene names are designed for consistency across all Eukaryota, with special attention to phylogenetically localized gene duplications. Following international agreement, no greek letters, roman numerals, hyphenation, lower case letters, subscripts, or superscripts are used in gene names. It is completely unworkable with 10,000 vertebrate genomes on their way to use prefix conventions such as mCRY1 for mouse -- even 6 letters for genusSpecies can provide no more than a mnemonic. Since annotation today is done by gene family, the gene name comes first to preserve orthologous clustering when listed alphabetically and to provide clarity in alignment output.

The availability of some orthology classes is quite limited due to recent origin in conjunction with restricted phylogenetic persistance but the sequencing effort itself is spread very unevenly across the phylogenetic tree of metazoans. For species with good assemblies, the entire repertoire of cryptochromes and photolyases is provided. For large gene like these with numerous exons, absence from the assembly usually means genuine absence from the genome. When only an exon or two gene fragment is available, the classifier can still usually assign the correct orthology class. However it is risky to assemble an entire gene from unlinked contigs and that was not done here with the exception of critical clades such as cartilaginous fish that lack coherent assemblies and applicable transcripts. In some cases, the primary goal is to establish presence/absence of a given gene family

A remarkable amount of the data has surfaced at GenBank only in the last six months, implying much better phylogenetic coverage will surface during 2012-13. Thus the timing of gene duplications will be resolved shortly to the extent that surviving species can delimit it. We can also hope that the exact role of 4Fe-4S clusters in photolyases, primases, helicases and other DNA repair enzymes will soon be clarified, providing a solidly understood underpinning to the evolutionary origin of photolyases and cryptochromes.

Vertebrate CRY1 reference sequences

>CRY1_homSap Homo sapiens (human)
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGFMGYSAENIPGCSSSG 1
2 SCSQGSGILHYAHGDSQQTHLLKQ 1
2 GRSSMGTGLSGGKRPSQEEDTQSIGPKVQRQSTN* 0

>CRY1_panTro Pan troglodytes (chimpanzee) XM_509339
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGFMGYSAENIPGCSSSG 1
2 SCSQGSGILHYAHGDSQQTHLLKQ 1
2 GRSSVGTGLSGGKRPSQEEDTQSIGPKVQRQSTN* 0

>CRY1_ponAbe Pongo abelii (orangutan) XM_002823690
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDASLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGFMGYSAENVPGCSSSG 1
2 SCSQGSGILHYAHGDSQQTHLLKQ 1
2 GRSSMGTGLSGGKRASQEEDTQSIGPKVQRQSTN* 0

>CRY1_nomLeu Nomascus leucogenys (gibbon) XM_003269977
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGFMGYSAENIPGCSSSG 1
2 SCSQGSGILHYAHGDSQQTHLLKQ 1
2 GRSSMGTGLSGGKRPSQEEDTQSIGPKVQRQSTN* 0

>CRY1_macMul Macaca mulatta (rhesus) NM_001194159
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGFMGYSTENIPGCSSSGS 1
2 CSQGSGILHYTHGDSQQTHLLKQ 1
2 GRSSMGTGLSGGKRPSQEEDTQSIGPKVQRQSTN* 0

>CRY1_calJac Callithrix jacchus (marmoset) XM_002752946
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGFMGYSAENIPGCTSSG 1
2 SCSQGSGILHCAHGDSQQTHLLKQ 1
2 GRSSMSTGISGGKRPSQEEDTQSIGPKVQRQSTN* 0

>CRY1_saiBol Saimiri boliviensis (squirrel_monkey) nearly identical to marmoset
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGFMGYSAENIPGCTSSG 1
2 SCSQGSGILHCAHGDSQQTHLLKQ 1
2 GRSSMSTGLGGGKRPSQEEDTQSIGPKVQRQSTN* 0

>CRY1_tarSyr Tarsius syrichta (tarsier) ABRT010205577 unsure if exon 2 is CRY1 or CRY2
0 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWNIAKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 0
0 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGFMGYSPAENTPGCSSSG 1
2 SCSQGSGILHYAHGDSQQTHLLKQ 1
2 GRSSVGTGLSGGKRPSQEEDPQSIGPKVQRQSTN* 0

>CRY1_micMur Microcebus murinus (mouse_lemur) 
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 IIELNGGQPPLTYKRFQTLISK SEVIEKCTTPLSDD    1
2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0  0
0  2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGFMEYSPAENIPGCSSSG 1
2 NCSQGSGILHYAHGDSQQTHLLKQ 1
2 GRSSMGTGFSGGKRPSQEEDTQSIGSKVQRQSTN* 0

>CRY1_otoGar Otolemur garnettii (bushbaby) AAQR03016495
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITRLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 0
0 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEIIEKCTTPLFDDHDEKYGVPSLEEL 1
2  0
2 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPASFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGSFMEYSPPENIPGCSSSG 1
2 NCSQGSGILHYAPGDGQQPHLLKQ 1
2 GRSSMGTGLSGGKRPSQEEDMQSVGPKVQRQSTN* 0

>CRY1_tupBel Tupaia belangeri (treeshrew)
0 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 0
0 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKFGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRVNSNSLLASPTGL
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLSSSGSCSQGSGILHYAHGDSQQTHLLKQGRSSMGP      1
2  1
2 GCSQGSGILHYAHGDSQQTHLLKQ  1
2 GLSSGKRPSQEEDTQSIGPKVQRQSTN* 0

>CRY1_musMus Mus musculus (mouse) NM_007771 all transcripts support longer exon 10 lost splice donor
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVIGKCMTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLER 0
0 KAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNSNGNGGLMGYAPGENVPSCSSSGNGGLMGYAPGENVPSCSGG 1
2 NCSQGSGILHYAHGDSQQTHSLKQ 1
2 GRSSAGTGLSSGKRPSQEEDAQSVGPKVQRQSSN* 0

>CRY1_ratNor Rattus norvegicus (rat) NM_198750
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVIGKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLMGYAPGENVPSGGSGGG 1
2 NCSQGSGILHYAHGDSQQTNPLKQ 1
2 GRSSMGTGLSSGKRPSQEEDAQSVGPKVQRQSSN* 0

>CRY1_criGri Cricetulus griseus (hamster) XM_003505292
0 MGVNAVHWFRKglrlhDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDSNLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLVSKMEPLEMPAETITSDVIGKCMTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLER 0
0 KAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLMGYTTGENLPSCSGGG 1
2 SCSQGSGILHYAHGDSQQAHLLKQ 1
2 GRSSMGTSLSSGKRPSQEEETRSVDPKVQRQSSN* 0

>CRY1_spaJud Spalax judaei (blind_mole_rat) AJ606298
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRW 2
1 RFLLQCLEDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLERR 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTGSDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLMGYTPGENIPNCSSSG 1
2 SCSQGSGILHYAHGDSQQAHLLKQ 1
2 GSSSMGHGLSNGKRPSQEEDTQSIGPKVQRQSTN* 0

>CRY1_dipOrd Dipodomys ordii (kangaroo_rat) ABRO01202522 ABRO01202521
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRW 2
1 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCSVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLMGYAAGDNLPGSSSSG 1
2 SCSQGSGILHYAHGDSQQMHLLKQ 1
2 GRSSMGTGLSSGKRPSQEEDSQSIGPKVQRQSTN* 0

>CRY1_hetGla Heterocephalus glaber (mole-rat) stop codon in place of conserved W8, last two exons very diverged
0 MAMNAVH*FRKGLRLHDNPALKECTRGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCVTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLMGYAPGESIPGSSGSG 1
2 SCAHGSGILPCAHTDGQQAHLLKP 1
2 GRNCVGPVLSSGKRPSQEEDAQSIGPKLQRQSTD* 0

>CRY1_cavPor Cavia porcellus (guinea pig) last two exons diverged 69 bp separation
0 MGVNAVHWFRKGLRLHDNPALKECIRGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVVEKCVTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVHHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLLGYAPGESTPGSGGG 1
2 SCVPGSSSAGVSHCAQGEAPQAPP 1
2 GRDPAGPGLGGGKRPSQEEDAQSTGHKIQRQSPD* 0

>CRY1_speTri Spermophilus tridecemlineatus (squirrel) Ictidomys
0  2
1  0
0    RDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHEASLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLMAyAPGENIPGCSSSG 1
2 SCTQGSSILHNAHGDSQQTHLLKQ 1
2 GRSSMGTGLSSGKRPSQEEDTQSIGPKVQRQSTN* 0

>CRY1_oryCun Oryctolagus cuniculus (rabbit)
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRW 2
1 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITRLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSDVIEKCTTPVSDDHDEKYGVPSLEEL 1
2 GFDTDGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLMGYSPGENIPGCSSSG 1
2 SCSQGSGILHYAQGDTQQTQLLKQ 1
2 GRSSMGTGLSSGKRPSQEEDTQSIGPKVQRQSTN* 0

>CRY1_oviAri Ovis aries (sheep) NM_001129735 19341811 19150926
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIIRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVMEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLMGYSPGENIPGCSSSA 1
2 SCTQGSGILHYAHGDSQQTHLLKQ 1
2 GRSSTAAGLGSGKRPSQEEDTQSVGPKVQRQSTN* 0

>CRY1_bosTau Bos taurus (cow) NM_001105415 XM_616063
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLMGYSPGENIPGCSSNA 1
2 SCTQGSGILHYAHGDSQQTHLLKQ 1
2 GRSSTGAGLGSGKRPSQEEDTQSIGPKVQRQSTN* 0

>CRY1_susScr Sus scrofa (pig) XM_003126079
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLMGYSPGENIPGCSSSG 1
2 SCPQGSGILHYAHGESQQNHLLKQ 1
2 GRSSTGSGLSSAKRPSQEEDTQSIIGPKVQRQSTN* 0

>CRY1_ailMel Ailuropoda melanoleuca (panda) XM_002927658
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPANPNGNGGLMGYSPGENIPGCSSSG 1
2 SCSQGSGILHYAHGDSQQTHLLKQ 1
2 GRSSMGSGLSSGKRPSEEEDTQSIGPKVQRQSTN* 0

>CRY1_loxAfr Loxodonta africana (elephant) XM_003405313
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWDITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIGKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLMGYSPGENTPGCNSSG 1
2 SCSQGSGILHYVHGDSLLKQ 1
2 GRSPTGTGVSSGKRPSQDEETQTLGPKVQRQSTN* 0

>CRY1_triMan Trichechus manatus (manatee) AHIN01036366 AHIN01036362 very similar to elephant
0 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWDITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVMEKCTTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCSIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLMGYSPGENIPGCSSNG 1
2 SCPQGNGILHYAHRDSQQAHLLKQ 1
2 GRSPTGTGVSSGKRPSQEEETQSIGPKVQRQSAN* 0

>CRY1_monDom Monodelphis domestica (opossum) XM_003341966
0 MGVNAGHWFRKRLRLPHNPALKGCIQGADTVCCVYIRDPWFGGSSNFGANEWK 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMEPLATPVETITPEVMHKCVTPLSDEHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGSLMAYTPGENIPGCSSGG 1
2 GAPVGASDGQILQACVLPEPPTGTSGVQQP 1
2 GYSQGSGISHYSHEDSQQAYMLKQ 1
2 GRSSLGVGGGKRPRQEEETQSINPKVQRQSTN* 0

>CRY1_macEug Macropus eugenii (wallaby) assembly frameshift
0 MGVNAVHWFRKGLRLHDNPALKECIEGADTVRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPLGRNAMQLLKNWASEAGVEVIVRISHTLYDLDK 2
1  1
2 gFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGVQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGSLMGYTTGENIPTCSSSGG 1
2 GAPAGASDGQILQACVLPEPPTGTSGVQQP 1
2 GYSQGSGISHYSHEDSQQAYVLKQ 1
2 GRNSLGGGKRHRQEEETQSIGSKMQRQSVN* 0

>CRY1_sarHar Sarcophilus harrisii (tasmanian_devil) nearly identical to oppossum
0 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLMGYTSGENGPACNSGG 1
2 GAPVGASDGQILQSCALPEPPAGASCIQQS 1
2 GYSQGSGISHYSHEDSQQAYILKQ 1
2 GRSSLSGGKRPRQEEETQSVGPKVQRQSVN* 0

>CRY1_triVul Trichosurus vulpecula (possum) EC362500 terminal transcript
1                IERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGGLMGYAPGENIPACSSSGG 1
2 GAPAGVGDGQILQACALPEPPTGASGVQQP 1
2 GYSQGSGISHYAHEDSQQAYMLKQ 1
2 GRSSLSGGGKRHRQEEEAQSIGPKMQRQSVN* 0

>CRY1_ornAna Ornithorhynchus anatinus (platypus) XM_001508563 = rubbish, genomic frameshift, continuing exon 12
0 MGVNAVHWFRKGLRLHDNPALRDCVRGADTVRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYELDK 2
1 IIELNGGQPPLTYKRFQTLISRMDPLAMPVETITAEVMGKCMTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATSNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNANGSGGLMAYSPGENIPGCSSGGG 1
2 GVQMGASESH LLQTCVLGESHLGPSGIQQQ 1
2 GYCQGSGVLYYANGESHLTQ 1
2 GRSSLTPGLSGGKRPCQEEESQSIGPKVQRQSTD* 0

>CRY1_tacAcu Tachyglossus aculeatus (echidna) SRR000649.130490 short read transcripts corrected for frameshifts, skipped penultimate exon
0  2
1  0
0  2
1    ETITAEVMGKCVTPLSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGEAEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLTPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATSNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAImtqlrqeGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNANGSGGLMAYSPGENIPGCSSGG 1
2 GAQIGASESHLLQTCVLGESHLGPSGIQQQ 1
2  1
2 GRSSLTPGLSGGKRHCQEEESQSIGPKVQRQSTD* 0

>CRY1_galGal Gallus gallus (chicken) PMID: 11684328,17324421,15459395 altSplExon11: GIVGVPICRGSADLCN* BU143111
0 MGVNAVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWSIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVMQKCTTPVSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERH 0
0 LERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLATVPSNPNGNGNGGLMSFSPGESISGCSSAG 1
2 GAQLGTGDGQTVGVQTCALADSHTGGSGVQQQ 1
2 GYCQASSILRYAHGDNQQSHLMQP 1
2 GRASLGTGISAGKRPNPEEETQSVGPKVQRQSTN* 0

>CRY1_melGal Meleagris gallopavo (turkey) XM_003202363 altSplExon11: GTVGVPICRGSANWYK*
0  2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWSIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVMQKCTTPVSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERH 0
0 LERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLATVPSNPNGNGNGGLMSFSPGESISGCSSAG 1
2 GAQLGTGDGQTVGVQSCALGDSHTGGNGVQQQ 1
2 GYCQASSILRYAHGDNQQPHLMQP 1
2 GRASLGTGISAGKRPNPEEETQSVGPKVQRQSTN* 0

>CRY1_anaPla Anas platyrhynchos (duck) scaffold157 altSplExon11: GMTGVLVCRGSPGSHNYGKKDKT*
0 MGVNAVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVMEKCTTPVSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLATVPSNPNGNGSGGLMGFSPGESVSGCGSTG 1
2 GAQLGTGDSQTVGVQTCALGDSHAGTSGIQQQ 1
2 GYCQASSILHYAHGDNQQSHLLQA 1
2 GRTSLGTGISAGKRPNPEEETQSVGPKVQRQSTN* 0

>CRY1_eriRub Erithacus rubecula (robin) AY585716 aka: CRY1A altSplExon11: GIMAVPVCRGSPNACNYGKPDKTSK* CRY1B
0 MGVNAVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVMKKCTTPVFDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 ASVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLATVPSNPNGNGNGGLMGYSPGESISGCGSTG 1
2 GAQLGTGDGHTVVQSCTLGDSHSGTSGIQQQ 1
2 GYCQASSILHYAHGDNQQSHLLQA 1
2 GRTALGTGISAGKRPNPEEETQSVGPKVQRQSTN* 0

>CRY1_sylBor Sylvia borin (warbler) AJ632120 aka: CRY1A PMID:15381765 altSplExon11: GIVAVAVCRGSPNPCNYGKPDKTSE* sylBor DQ838738 CRY1B
0 MGVNAVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVMKKCTTPVSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLATVPSNPNGNGNGGLMGYSPGESISGCGSTG 1
2 GAQLGAGDGHSVVQSCALGDSHTGTSGVQQQ 1
3 GYCQASSILHYAHGDNQQSHLLQA 1
2 GRTALGTGISAGKRPNPEEETQSVGPKVQRQSTN* 0

>CRY1_taeGut Taeniopygia guttata (finch) XM_002196518 altSplExon11: GIMAVPVCRGSPNPCNYRKPDKTSK*
0 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 0
0 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVMKKCTTPVSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLATVPSNPNGNGNGGLMGYSPGESISGCGSTG 1
2 GAQLGTGDGHSVVQSCALGDSHTGTSGIQQQ 1
2 GYCQASSILHYAHGDNQQSHLLQA 1
2 GRTALGTGISAGKRPNPEEETQSVGPKVQRQSTN* 0

>CRY1_melUnd Melopsittacus undulatus (parakeet) AGAI01062111 altSplExon11: GIMAVPVCRGSSNPCNCGKTDKTSK*
0 MGVNAVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVMEKCTTPVSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLATVPSNPNGNGNGGLMGYSPGESISGCSSAGG 1
2 GAQLGTGDGHTVVQPCALGDSHTAGASGIQQQ 1
2 GYCQASSILHYAHGDNQQSHLLQAG1 
2 VGTGISAGKRPNPEEETQSVGPKVQRQSTN* 0

>CRY1_parWeb Paradoxornis webbianus (parrotbill) JR867166 TSA transcript
0  2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVMKKCTTPVSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLATVPSNPNGNGNGGLMGYSPGESISGCGSTG 1
2 GAQLGTGDGHSVVQSCALGDSHTGTSGIQQQ 1
2 GYCQASSILHYAHGDNQQSHLLQA 1
2 GRTALGTGISAGKRPNPEEETQSVGPKVQRQSTN* 0

>CRY1_allMis Alligator mississippiensis (alligator) genome/blat
0 MGVNAVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITAEVMKKCTTPVSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGVQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLATVPSNPNGNGNGGLMGYSPGENVSGCGSTG 1
2 GAQMGSSDGHTVSVQPCALGESHGGSNGIQQQ 1
2 GYFQASSILHFPHGDDQQSHLLQQ 1
2 GRTSLSSGISAGKRPNPEEETQSIGPKVQRQSTN* 0

>CRY1_anoCar Anolis carolinensis (lizard) XM_003220923 AAWZ02014443
0 MGVNAVHWFRKGLRLHDNPALREVIQGADTVRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYELDK 2
1 IIELNGGQPPLTYKRFQTLISRMEPLEIPVETITAEVMSKCTTPVSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPDGVQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQMYQQLSRYRGL 1
2 GLLASVPSNGNGNGNGGLMGYSTGENIPGCTNTN 1
2 GSQMGMNEGHIGNVQACTMGESHTGTSGIQQQ 1
2 GYSQGSGILLYSHGDNQKTHSAQKGRISLGT 1
2 GVCTGKRPSPEVETQSVGPKVQRQSSN* 0

>CRY1_podSic Podarcis siculus (wall_lizard) DQ376040 16809482
0 MGVNAVHWVRQGLRLPDNRALREVIQGADTARCVYILDPSFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNITKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITAEVMSKCTTPVSDDHDEKCGVPSLEEL 1
2 GFDTGGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARRAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGVQKVAKCVIGVNYPKPMVNHTEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPLMEWNVIVLMGYHQGTLLVYHAS 1
2 GSQMGTNEAHTGSVQTCTLGESHTGTSGIQQQ 1
2 GYPQGSDILHYAHGEGQKTHLIQQGRASLVA 1
2 GVCTGKRPNPEEETQSIGPKVQRQSSK* 0

>CRY1_pytMol Python molurus (python) AEQU010547455
0 MGVNSVHWFRKGLRLHDNPALREVIQGADTVRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFk 0
0 EWNISKLSIEYDSEPFGKERDAAIKKLATEAGLEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITAEVMSKCTTPVSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLER 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPILRGFPAKYIYDPWNAPEGVQKAAKCIIGINYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL
2  1
2 GAQMGTSEGHTGNVQACTLGETHTGTSGIQQQ 1
2 GYSQGNSGILHYAHGDSQKTLLMQ 1
2 GRTSLSVGVCTGKRPNPEEGIQSIGPKVQRQSSN* 0

>CRY1_chrPic Chrysemys picta (turtle) AHGY01469963 AHGY01469969
0 MGVNAVHWFRKGLRLHDNPALRECIQGADSVRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISRMEPLEMPVETITAEVMEKCTTPVSDDHDEKYGVPSLEEL 1
2 GFDTDGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNRSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVSFGRRTDPNGDYIR 2
1 RYLPILRGFPAKYIYDPWNAPESIQKAAKCVIGVHYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLATVPSNP  NGNGGLMGYSPGENISGCSSAS 1
2 GAQMGSNDGHTVGVQTCSLEDSHAGSSGIQQH 1
2 GYSQGNSIVHYAQGDHQQSHLLQQG 1
2 GRTVSTGISTGKRPNPEKETQSIGPKVQRQSTN* 0

>CRY1_xenTro Xenopus tropicalis (frog) NM_001087660 11533577 final four exons confirmed by many ESTs
0 MGVNAVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWKITKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISKMDPLEIPVETITAEVMEKCTTPVSDDHDEKYGVPSLEEL 1
2 GFDTEGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKK  0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMDGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGKRTDPNGDYIR 2
1 RYLPILKGFPPKYIYDPWNAPETVQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNPNGNGNGGLMSYSPGESMSGCSNNG 1
2 GGQMGVNEGSSASNPNANKGEVHPGTSGLQ 1
2 GYWQGSSILHYSHSDSQQSYLMQ 1
2 ARNPLHSVVSSGKRPNPEEETQSIGPKVQRQSSH* 0

>CRY1A_latCha Latimeria chalumnae (coelocanth) AFYH01018055 AFYH01018053 AFYH01018050
0 MGVNAIHWFRKGLRLHDNPALREAIQGGDCIRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNISRLSFEYDSEPFGKERDAAIKKLASEAGVEVIVRITHTLYDLDR 2
1 IIELNGGQPPLTYKRFQTLISRMEPLDLPVETINSEVMGNCSTPVSDDHDEKYGVPSLEEL 1
2 GFDTEGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPEGVQKAAKCIIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGM 1
2 GLLASVPSNPNGNGGLGCSLAENIPVCNSAA 1
2 GAQMGGDDGHKVSVLAYTQGDSRAGEIEMQQQ* 1
2 GYGPGSTILRYAHGDSQHTRAVLLQQ 1
2 GRSPIGSSVTSGKRPSPDEETQSIGPKVQRQNSN* 0

>CRY1B_latCha Latimeria chalumnae (coelocanth) last exons uncertain
0 MVVNSVHWFRKGLRLHDNPALQEALKGADTVRCVYMLDPRFAGSSNLGINRWR 2
1 FLLQCLEDLDASLRKLNSRLFVIRGQPANVFPRLFK 0
0 EWKITRLTIEYDSEPFGKERDAAIKKLASEAGVEVIVKISHTLYDLDK 2
1 IIELNGGHPPLTYKRFQTLVSRMEHPEMPVEAITASFMGKCITPVSEDHHEKYGVPSLEEL 1
2 GFDTEGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFEKPRMNANSLLASPTGLSPYLRFGCLSCHLFYFKLTDLYKK 0
0 VKKNGSPPLSLYGQLLWREFFYTAATNNPQFDKMEGNPICVRIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEDLLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWSAPESVQTAAKCIIGVHYPKPVVNHAEASRLNIERMKQIYQQLSRYRGM 1
2 GLLASVPSNHNGNGNGGMMVYSPVEPTLGTNAAH 1
2 GFSIASGHSNTSILLSYSNDEQPGPSGIQ 1
2 GWSNYGNANGNSSGKRDREPEQDGSTDDETHMALVK 1
2 * 0

>CRY1A_lepOcu Lepisosteus oculatus (spotted_gar) AHAT01025403
0 MVVNTVHWFRKGLRLHDSPALRESLKGAASLRCVYILDPWFAGSSNVGINRWR 2
1 FLLQCLEDLDASLRKLNSRLFVIRGQPADVFPRLFK 0
0 EWNINRLSFEYDSEPFGKERDAAIKKLASEADVEVIVRVSHTLYDLDK 2
1 IIELNGGQPPLTYKRFQTLISRMDPLETPAEPITAEVMGKCTTPVSDDHDEKFGVPSLEEL 1
2 GFDTEGLPSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRHEGWIHHLARHAVACFLTRGDLWVSWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPDSVQKAAKCVIGVHYPKPMVHHAEASRLNIERMKQIYQQLSCYRGL 1
2 GLLASVPSNPNGSGGAGMTGFSSGEGLHSSNAA 1
2 GYQIPSGRSSLPSYSSGDSQAGSNLLPQ 1
2 GYTRGSTVVHYTQGDSQQTS 1
2 GRGHLPSVLTTVKRPSPEESTQGIVPKVQRQSSN* 0

>CRY1B_lepOcu Lepisosteus oculatus (spotted_gar) AHAT01016727 AHAT01016728
0 MGPNSIHWFRKGLRLHDNPALKEAIRGASTVRCVYFLDPWFAGSSNLGVNRWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFK 0
0 EWKISRLTFEYDSEPFGKERDAAIKKLAKEAGVEVIVKISHTLYDLDR 2
1 IIELNGGQPPLTYKRFQTLISRMDPPELPVDPLSEVFMGKCVTPVSDDHGDKYGVPSLEEL 1
2 GFDTEGLPSAVWPGGETEALTRIERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATTNPRFDKMEGNPICVRIPWDRNSEALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPDSVQNAAKCVIGVHYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSNHNGNGNGGMMAYSPGEQQPAHGTTY 1
2 GPGSSVASGNGSSSILLNFDGEEQPGPSGVHH 1
2  1
2 GRWAHGGAGGGSSAPGKRERETERDAAGDEEARSSA* 0

>CRY1A_danRer Danio rerio (zebrafish) NM_001077297 whole genome duplicate of retained CRY1 duplicate
0 MVVNTVHWFRKGLRLHDNPSLRDSILGAHSVRCVYILDPWFAGSSNVGISRWR 2
1 FLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFK 0
0 EWNINRLSYEYDSEPFGKERDAAIKKLANEAGVEVIVRISHTLYDLDK 2
1 IIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGPCTTPLSDDHDEKFGVPSLEEL 1
2 GFDTEGLSSAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVSFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEASRLNIERMKQIYQQLSCYRGL 1
2 GLLAMVPSNPNGNGENSTSLMGFQTGDMTKEVTTPS 1
2 GYQMPPTSQGEWHGRTMVYSQGDQQTSSIMTSQ 1
2 GFGNNGSTMCYRQDAQQIT 1
2 GRGLHSSIIQTSGKRHSEESGPTTVSKVQRQCSS* 0

>CRY1A2_danRer Danio rerio (zebrafish) BC044558 AW184635 olfactory old teleost CRY1 duplicate syntenically retained as tetrapod CRY1
0 MVVNTVHWFRKGLRLHDNPSLRDSIKGADNLRCVYILDPWFAGSSNVGISRWR 2
1 FLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFK 0
0 EWKISRLSYEYDSEPFGKDRDAAIRKLATEAGVEVFVRISHTLYDLDK 2
1 IIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIMGKCSTPVSDDHDDKFGVPSLEEL 1
2 GFETEGLSTAVWPGGETEALTRLERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRK 0
0 VKKNSTPSLSLYGQLLWREFFYTAATNNPHFDKMEFNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEASRINIERMKQIYQQLSCYRGL 1
2 GLLATIPSNTANNEDSNGAGPSSGDTQESTHIT 1
2 VHTLPASSQSEFPAFAVSCGQQLVNSVQPQP 1
2 GYSGAGMVGQAHKQTQR 1
2 VRGMTAFKRHGEDRTTDFPSKIQRNDCN* 0

>CRY1B_danRer Danio rerio (zebrafish) BC095305 EB921055 aka CRY2A whole genome duplicate  of lost CRY1 duplicate
0 MAPNSIHWFRKGLRLHDNPALQEAVRGADTVRCVYFLDPWFAGSSNLGVNRWR 2
1 FLLQCLDDLDSNLRKLNSRLFVVRGQPANVFPRLFK 0
0 EWKISRLTFEYDSEPFGKERDAAIKKLAMEAGVEVIVKTSHTLYNLDK 2
1 IIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMGCCVTPVSEDHGDKYGVPSLEEL 1
2 GFDIEGLPSAVWPGGETEALTRIERHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRK 0
0 VKKTSTPPLSLYGQLLWREFFYTAATTNPRFDKMEGNPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDFIR 2
1 RYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNHAEASRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSTHNGNGNGMAYSPGEQQSGTNTP 1
2 APAVSSGSVASGNRSGSILLNFDSEEHQGPSGIQQQHQQQQQQQQQQQL 1
2 GYHHMPDSGHNSRFYKSNVSHDMA 1
2 GHLLHKGGSVTGKRERESERDLDGEDESLSTSHKLQRQIAEVTSVYASSGNQSSMVNITLLNL* 0

>CRY1C_danRer Danio rerio (zebrafish) BC164795 EE210836 aka CRY2B old CRY1 duplicate lost in tetrapods CRY1 C12ORF23 CRY4 
0 MSVNSVHWFRKGLRLHDNPALLEALNGADTLRCVYFLDPWFAGASNLGVNRWR 2
1 FLLQSLEDLDASLRKLNSCLFVIRGQPADIFPRLFK 0
0 EWKVSRLTFEFDSEPFGKERDAAIKKLACEAGVEVIVKISHTLYDLDR 2
1 IIELNGGQSPLTYKRFQTLVSSMEPPDPPLSSPDRGMMGKCVTPISENHRDKYGVPLLEEL 1
2 GFDTEGLAPvVWPGGESEALKRMERHLdrt 0
0 AWQENFERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCKLTQLYKK 0
0 VKKNMNPSISLYDKILWREFFYTAATNNPRFDRMEGNPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMMQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWLCHSCSSFFQQFFHCYCPVGFGRRIDPNGDFIR 2
1 RYLPVLRDFPAKYIYDPWNAPHDVQLAAKCVIGVDYPKPMVNHAEASRLNIERMRQIYQQLSRYRGL 1
2 GLLATVPSNHIEDAAANVNRGAMAPPTRRKTRNDASSY 1
2 RVRREQPGPSGAKHRHRHSLS 1
2 HRPSPYATQSELTDHNHEFAVPQQP 1
2 GRVSWPNVGGTGKKEGEAEHNCCRGDNGPSSSALKAQQQDNEVCRK* 0

>CRY1A_leuEri Leucoraja erinacea (skate) AESE010236716 AESE011153531 AESE010038968 AESE010673288 AESE012524396
0 MGCNSIHWFRKGLRLHDNPALLESVQGVDTIRCVYIVDPWFAGTSSLAINRWR 2
1 FLIESLEDLDISLRKLKSRLFVVRGQPTDVFPRLFK 0
0  2
1 IERNGGQPPLTYKHFQKLISQMGPVEMPVKMITSETMGRCTMPVLDDHGDRFGVPSLEEL 1
2 GFETEGLTSAVWPGGETEALARLERHLERK 0
0 AWVANFERPGMNSKSLLASPTGLSPYLRFGCLSSRLFYFKLTELYKK 0
0 VKKNSSPPLSLYGQLFWREFFYAAGTNNPKFDKMEGNPICVQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGNWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGYPAKHIYDPWNAPEDVQRAANCVIGVDYPRPMVHHAEASRLNIERMKQIYQQLSCYRGL 1
2  1
2  * 0

>CRY1B_leuEri Leucoraja erinacea (skate) AESE011669465 AESE012563587 AESE010604630 AESE011547252
0 MVRNAVHWFRKGLRLHDNPALQRALSGADTVRCVYILDPCFASSSNIRINWWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFK 0
0 KWNVTQLTFEYDSEPFGKERDAAIMKLAKIAGVEVIVQISHTLYDVDR 2
1 IIELNGGQPPLTYKRFQTLISRMDPPELPVDPLSEVFMGKCVTPVSDDHGDKYGVPSLEEL 1
2 GFDTSELGCAVWQGGETKALAWLHKHFEGK 0
0 ACTASYESSNLNPDSLMSSSTGLCPYLCLGCLSCRKFYYTLLEFYRM 0
0 IKDHNKSPLPLYGELLRREFFYTAATNNPRFDRMEGNPVCVQIPWDKNQQALAKWADGQTGFPWIDAIMKQLRQEGWIHHLARRAVGCFLTRSDLWISWEEGMK  0
0 VFNELLLDADFSVSAGWWMWLSCSAFFQRFLPCYCPVAFGRRTDPNGDYVR 2
1  1
2  1
2  * 0

>CRY1A_calMil Callorhinchus milii (shark) AAVX01551101 AAVX01266331 AAVX01354908 AAVX01055947
0 MVVNSVHWFRKGLRLHDNPALQAAVSGADTVRSVYILDPWFAGSSNVRINKWR 2
1 FLLQCLEDLDISLRKLKSRLFVVRGQPTDVFPRLFK 0
0 EWNVTRLTFEYDSEPFGKERDVAIVNLARKAGVETIVHTSHTLYDVNR 2
1  1
2 GFDTEGLSSAVWPGGESEALTRLERHLERK 0
0 AWVANFERPRMNSNSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKK 0
0  SLYGQLLWREFFYAAATNNPRFDKMEGNPICVQIPWDRNAEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYLPVLRGFPAKYIYDPWNAPESVQKAAKCILGVHYPKPMVNHAEASCLNIERMKQIYQQLSCYRGL 1
2 GLLDSVPSNPNGNGG IMGYSAGENTHGCNNLT 1
2 VPSNPNGNGGIMGYSAGENTHGCNNLT 1
2  1
2  * 0

>CRY1B_calMil Callorhinchus milii (shark) AAVX01090452 AAVX01101328 AAVX01636526 AAVX01201905
0 MVVNSVHWFRKGLRRHDNPVLQAAVSGADTIRSVYILDTWFTGSSNVHINKWR 2
1 FLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFK 0
0  2
1  1
2  0
0  0
0  WADGLTGFPWIDAIMKQLRKEGWIHHLARHAVSCFLTRGDLWISWEEGMK 0
0 VFEELLLDADFSINAGSWMWLSCSAFFQQFFHCYCPVGFGKRTDPSGDYIR 2
1 RYLPLLKEYPTKYIYEPWNAPLAVQKAAKCIIGIDYPKPIVNHAEASRLNIERMKQIYQQLSHYKGL 1
2  1
2  1
2  1
2  * 0

>CRY1_petMar Petromyzon marinus (lamprey) Contig24766
0 MVLNSIHWFRKGLRLHDNPALREALQGADTVRCVYILDPWFAGASNVGINRWR 2
1 FLLQSLEDLDASLHKLNSRLFVIRGQPADVFPRLFK 0
0 EWNISRLTFEYDSEPFGKERDAAIKKLASEAGVEVLVRISHTLYNLDR 2
1 IIELNEGQAPLTYKRFQALVSRMEPPERPVGTITSEVMGPCRTPLWEDHDERYGVPSLEEL 1
2 GFDTDGLTTAVWQGGESEALTRLDRHLERK 0
0 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFHYKLTELYKK 0
0 VKKNSSPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICVQIPWDRNPEALAKWAEGRTGYPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 2
1 RYIPLLRAFPAKYIYDPWNAPESVQKTARCIIGVDYPKPMANHAEASRLNIERMKQIYQHLSRYRGL 1
2  1
2  1
2  1
2 * 0

>CRY1_braFlo Branchiostoma floridae (amphioxus) XM_002609455 end uncertain
0 MKSTIHWFRKGLRLHDNPSLRDALQMLQPGDVWRCVYVLDPWFAGSSNVGVNRWR 2
1 FLLQCLEDLDASLRKLNSRLYVIRGQPTDVFPRLFK 0
0 EWKVSCLSFEEDSEPFGRERDMAVMKLAKEAGVKVILRTSHTLYKLQD 2
1 IIDVNGGQPPLTYKRFQAILSKMDPPDQPVDSITASTVDNLTTPIRDDHDEKFGVPSLEEL 1
2 GFDTDNLNPVVWPGGETEALTRLERHLERK 0
0 AWVASFERPKMTASSLLASPTGLSPYLRFGCLSPRLFYKKLTELYKK 0
0 VKRSNHPPLSLYGQLLWREFFYTAATNNPNFDKMVNNTICVQIPWDKNPEALAKWAE 00 GQTGFPWIDAIMAQLQQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSSFFQQFFHVYCPVNFGRRTDPNGDFIR 2
1 KYLPKLRGFPAKYIYDPWNSPESVQKAAKCII 12 GKDYPLPMVNHAETSRINVERMKQVYQQLSRYRGA 1
2 GLLATIPYPDGGNGNPTGHKKHAIVQGMERQHAERREHGQPAHVSRQHI* 0

>CRY1A_strPur Strongylocentrotus purpuratus (urchin) XM_001194752 same split exons as braFlo, end of gene uncertain, partial duplicate elsewhere
0 MPKRKHRSSRRDREEKPGCLVHWFRKGLRLHDNPALKEGLKSASGFRCIYILDPWFAGSCSKGVNRWR 2
1 FLLECLEDLDSSLRKLNSRLFLIRGQPADVLPRLFK 0
0 EWKVTQLSFEEDSEPFGRTRDKAISTLAQEAGVKVISKVSHTLYDPQE 2
1 ILALNNNEPPLTYKRFQDIISLMGIPIYPAEALEAEDVEGLDTFIDPNHEDKYGIPTLEEL 1
2 GFDPEDVPPPMWIGGETEAKQRLDRHLERK 0
0 AWVANFERPRMSPASLMASPAGLSPYLRFGCLSPRTFYWKLTELYQK 0
0 VRKTTNTPLSLHGQLLWREFFFTVACNNRQFDHMVDNPICIQIPWDKNTALLNKWAN 00 GETGYPWIDAIMTQLRLEGWIHPLARHAVACFLTRGDLWISWEEGMK 0
0 VFDEYLLDADWSVNAGNWIWLSCSSFYQQFFHCYCPVKFGRRTDPNGDYVR 2
1 KYLPFLKNFPSKYIFEPWTAPIEVQEKAKCII 12 GKDYPLPIVDHAEASHRNIERMRKVYNNLSRRGGP 1
2 GILGSVPSSQAASAPPQLGKFNMSSKHGQLLCITVYYCVLLCITV* 0

Vertebrate CRY2 reference sequences

>CRY2_homSap Homo sapiens (human) 11 exons
0 MAATVATAAAVAPAPAPGTDSASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPSSSQAGSMSSA 1
2 GPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELPSKDA* 0

>CRY2_panTro Pan troglodytes (chimp)
0 MAATVATAAAVAPAPAPGTDGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPSSSQAGSMSSA 1
2 GPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELPSKDA* 0

>CRY2_gorGor Gorilla gorilla (gorilla)
0 MAATVATAAAVAPAPAPGTDGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPSSSQAGSVSSA 1
2 GPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELPSKDA* 0

>CRY2_ponAbe Pongo pygmaeus (orangutan)
0 MAATVATAAAVAPAPAPGTDGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPSSSQAGSVSSA 1
2 GPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELPSKDA* 0

>CRY2_rheMac Macaca mulatta (rhesus) CJ488220 testis
0 MAATVATAAAVAPAPAPGTDGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLER 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPSSSQAGSVNSA 1
2 GPRPLPSGPASPKRKLEAAEEPPGEELSKRAKVAELPTPELPSKDA* 0

>CRY2_papHam Papio hamadryas (baboon)
0 MAATVATAAAVAPAPAPGTDGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLER 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPSSSQAGSVNSA 1
2 GPRPLPSGPASPKRKLEAAEEPPGEELSKRAKVAELPTPELPSKDA* 0

>CRY2_calJac Callithrix jacchus (marmoset)
0 MAATVATAAAAVPAPAPGTDGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPSSSQAGSMSSA 1
2 GPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELPSKDV* 0

>CRY2_micMur Microcebus murinus (mouse_lemur)
0 MATAVATAAAAPTPASSTDGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWr 2
1  0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNSGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPSSSQAGSMSST 1
2 GPRPLPSGPASPKRKLEAAEEPPGEELSKRARVTELPTPELPSKDA* 0

>CRY2_musMus Mus musculus (mouse) CF898022
0 MAAAAVVAATVPAQSMGADGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSQQMESCRAEIQENHDDTYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPGSSQAGSISNT 1
2 GPRALSSGPASPKRKLEAAEEPPGEELTKRARVTEMPTQEPASKDS* 0

>CRY2_ratNor Rattus norvegicus (rat) DN948283 prostate
0 MAAAAVVAATVPAQSMGADGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQALISRMELPKKPVGAVSSQHMENCRAEIQENHDDTYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPGSSQAGSISNT 1
2 GPRPLSSGPASPKRKLEAAEEPPGEELSKRARVTEMPAQEPPSKDS* 0

>CRY2_criGri Cricetulus griseus (hamster) XR_135830
0 MAAAAVVAGAPRGARVPALTMGADGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGAVTSQQMENCRAEIQENHDDTYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPSSSQAGSISNT 1
2 GSRPLSSGPASPKRKLEAAEEPPGEELSKRARVTEMPAQEPQTKDA* 0

>CRY2_spaJud Spalax judaei (blind_mole_rat) AJ606300
0 MAAASVVVATSAAPAMAVDGGSSVHWFRKGLRLHDNPSLLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIDLNGQKPPLTYKRFQAIISRMELPKKPVVAVTSQQMESCRAEIQDNHDDTYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFPTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAARCIIGVDYPRPMVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPSSSQPGSITNT 1
2 GPRPLSTGPASPKRKLEAAEEPPGEELSKRARVTELPAPEPASKDA* 0

>CRY2_dipOrd Dipodomys ordii (kangaroo_rat)
0 MAAAMVTAAVAVPAPPSGADGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDDTYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLQEGWIHHLARHAVTCFLTRGDLWVSW  0
0   2
1 RYLPRLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPSSSQAGSISST 1
2 GPRPLSSGPASPKRKLEAAEEPPGEELSKRARVTEMPAQEPPSKDS* 0

>CRY2_cavPor Cavia porcellus (guinea_pig)
0 MAAAVGTGTAAAPTPVTGAEGACSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGAVSSQQMESCRAEIQENHDDTYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPSLSQAGSSTST 1
2 GPRPLPGGPASPKRKLEAAEEPPGEELSKRARVAELPTPEPPSKDA* 0

>CRY2_hetGla Heterocephalus glaber (blind_mole_rat) EHA99865
0 MAAAVGTGTGAAPTPATGAEGACSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRW 2
1 RFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGAVSSQQMKSCRAEIQENHDDTYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPTLSQAGSSSSTG 1
2 PRSLPDGPASPKRKLEAAEEPPGEELSKRARVAELPAPEPTSKDA* 0

>CRY2_speTri Spermophilus tridecemlineatus (squirrel)
0 MSASVVTTSATLLTPTSADVSSVHWFRKGLRLDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHT  2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGAVSSQQMESCKAEIQEDHDDTYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKKNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPGSSQAGSISST 1
2 GPRPLSSGQASPKRKLEAAEEPPGEELSKRARVAELPTPELPSKDA* 0

>CRY2_oryCun Oryctolagus cuniculus (rabbit)
0 MAAAAAAAAAAVPAPAASANGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPAGSVTSQQLEGCRAEIQDNHDETYGVPSLEEL 1
2 GFPTEGLSPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVR 2
1 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSHPVAEPSSSQAGSVSGA 1
2 APRPLPSGPASPKRKLEAAEEPPGEELSKRARVAEVPTPELPSKAV* 0

>CRY2_turTru Tursiops truncatus (dolphin)
0 MAAAVATSAVAAPAPAARAEGASSVHWFRKGLRLHDNPALQAAVRGAHCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDK 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMEGCRAEIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRSSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCMEDLSNPVAEPSSSQAGGMSSA 1
2 GPRPLPSGPASPKRKLGAAEEPPGEELSKRARVAGLPPSELLSKDV* 0

>CRY2_bosTau Bos taurus (cow) EG706191 lens
0 MAAAAAAATQAPAARGDGASSVHWFRKGLRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDRSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDTAIMKMAKEAGVEVVTENSHTLYDLDK 2
1 IIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMEGCRAEIQESHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAAKCVIGVDYPRPIVNHAEASRLNIERMKQVYQQLSRYRGL 1
2 CLLASVPSCVEDLSNPVAEPSSIQAGSSSSV 1
2 GPRPLPGGPASPKRKLEAAEEPPGGELSKRARVAESLPSELPSRGV* 0

>CRY2_oviAri Ovis aries (sheep) NM_001129736 PubMed:19341811
0 MAAAAAATASAAAAAQAPAPRGDGASSVHWFRKGLRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDRSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDK 2
1 IIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMEGCQAEIQESHDETYGVPSLEEL 1
2 GFPTEGLGPAVWRGGETEALARLDKHLERK 0
0 AWVASYERPRMNASSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMAQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAEASRLNIERMKQVYQQLSRYRGL 1
2 CLLASVPSCVEDLSTPVAEPSSSQAGSSSSA 1
2 GPRPLPGGPASPKRKLEAAEEPPGGELSKRARVAESLPSELPSRGV* 0

>CRY2_susScr Sus scrofa (pig) XM_003122835
0 MAAAVATAAASSPAPAAGAEGASSVHWFRKGLRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPALFQ 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDK 2
1 IIELNGQKPPLTYKRFQALISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSNPVAEPSSSQAGSVSAA 1
2 GPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPPTELPGRDV* 0

>CRY2_equCab Equus caballus (horse)
0  2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMESCRADIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNAASLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKAFPSRYIYEPWNAPEAVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSNPVAEPSSSQAGSVSSA 1
2 GPRPPPSGPASPKRKLEAAEEPPGEELSKRARVAEPPS* 0

>CRY2_canFam Canis familiaris (dog) XM_540761
0 MAAAVVAAAAAAPVPTAGVDGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDK 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRADIQDNHDDTYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPILKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSNPVAEPSSSQTGSMSSA 1
2 GPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPTPELPCRDV* 0

>CRY2_ailMel Ailuropoda melanoleuca (panda) XM_002922310 iMet lost to assembly gap
0            PAPAAGVDGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDK 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRADIQESHDDTYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPILKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSNPVAEPSSSQTGSMSSA 1
2 GPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPAPEPPSRDV* 0

>CRY2_myoLuc Myotis lucifugus (microbat)
0 MAANAVTAAAAAPAPAAGTDGASSVYWFRKGLRLHDNPALLAAVRGARCVLCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVASVTRHQMESCPAEIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSSPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGFR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCMEDLSNPVAEPSLSQTGSMSSA 1
2 GPKPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPATELPSRDV* 0

>CRY2_pteVam Pteropus vampyrus (macrobat)
0 MAATVGTAAAAASAPAAGTDGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQHMESCTAEIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLNNPVAEPSSSQTGSMNNA 1
2 GPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPAPELPSRDV* 0

>CRY2_loxAfr Loxodonta africana (elephant)
0 MAAAVVTAGAAALVPIPSMDGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSSPVAEPSSSQAGSSNSA 1
2 GPRPLPSGPTSPKRKLEAAEEPPGEELSKRARVAKLPGPELPSKDV* 0

>CRY2_triMan Trichechus manatus (manatee) AHIN01126950 AHIN01126951
0 MAATVVTAAAAALAPAPSIDGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDRSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEEL 1
2 GFPTEGLGPAVWQGGETEAMARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCAEDLSNPVAEPSLSQAGSMSSA 1
2 GPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAKLPSPELPSKDV* 0

>CRY2_choHof Choloepus hoffmanni (sloth)
0 MAATAVMAGSAAPAPASGTEGASSVHWFRKGL*LHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPsleel  1
2 gFPTEGLGPAVWQGGEAEALARLDKHLERK 0
0 AWVANFERPQMNANSLLASPTGLSPYLQFGCLSCQLFYFKLTDLYKK 0
0 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNSGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSNPVAEPSSSQAGSMSSA 1
2 GPRPVPSGPASPKRKLEAAEEPPGEELSKRARVTELPTPELPSKDV* 0

>CRY2_macEug Macropus eugenii (wallaby) FY652314 testis
0  2
1 FLLQSLEDLDISLRKLNSRLFVVRGQPTDVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIVKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVSCVTSQQMEQCQAEIQENHDDTYGVPSLEEL 1
2 GFPTDGLGPAVWQGGEMEALARLDKHLERK 0
0 AWVANYERPRMNATSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKK 0
0 VKRNNTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVR 2
1 RYLPQLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCMEDLSSPMAETSMGQAGSVSST 1
2 GPKPLPCSPASPKRK LEATEEASREEHSKRARMAALPVPELAS* 0

>CRY2_monDom Monodelphis domestica (opossum)
0 MAAAVVTMTAAAPAPAPSPEGASSVHWFRKGLRLHDNPALQAALRGARCVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDISLRKLNSRLFVVRGQPTDVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIVKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPRKPVNSVTSQQMERCQAEIQENHDDAYGVPSLEEL 1
2 GFPTDGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNAASLLASPTGLSPYLRFGCLSCRLFYYRLWELYKK 0
0 VKRNNTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNSGSWMWLSCSAFFQQFFHCYCPGFGRRTDPSGDYVR 2
1 RYLPQLKGFPARYIYEPWNAPEPVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCLEDLSSPMVEASLGQAGAVSGP 1
2 GLKPLPCSPASPKRKLEATEEAPGEEHSKRARVARLPGSELAGKDV* 0

>CRY2_ornAna Ornithorhynchus anatinus (platypus)
0  LHDNPALQAALRGARSVRCVYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIVKMAKEAGVEVVTENSHTLYDLDR 2
1 IIELNGQKPPLTYKRFQAIISRMELPKKPVSCVTSQQMEGCKAEIQDNHDDTYGVPSLEEL 1
2 GFPTDGLGPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKK 0
0 VKRNSTPPLSLYGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDFIR 2
1 RYLPKLKAFPSRYIYEPWNAPESVQKAAKCVIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSSAAAESGLGQASGSNIST 1
2 APRPPPPPYGPASPKRKLEAAEGLPGEELCKRPKVAGRPGPEPPGEDA* 0

>CRY2_galGal Gallus gallus (chicken) AJ396745 bursa 19456395 15459395
0 MAAAASPPRGFCRSVHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASSAVGINRWR 2
1 FLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVVIENSHTLYDLDR 2
1 IIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCKVDIQENHDDVYGVPSLEEL 1
2 GFPTDGLAPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKK 0
0 VKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVK 2
1 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDLSGPVTDSAPGQGSSTST 1
2 AVRLPQSDQASPKRKHEGAEELCTEELYKRAKVTGLPAPEIPGKSS* 0

>CRY2_taeGut Taeniopygia guttata (finch) FE716439 brain
0  IYILDPWFAATSAVGINRWR 2
1 FLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIVKLAKEAGVEVVIENSHTLYDLDR 2
1 IIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHDDVYGVPSLEEL 1
2 GFPTDGLAPAVWQGGETEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKK 0
0 VKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVK 2
1 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCVEDISGPVPDSASGQGCSTST 1
2 AVRLSQAEQASPKRKHEGAEEPCSEELYKRAKVTGLPTSEISGKSL* 0

>CRY2_allMis Alligator mississippiensis (alligator) genome/blat
0 MAASRSFPSSVPARAGPCRAVHWFRRGLRMHDNPALQAALRDAASVRCIYILDPWFAASSAVGINRWR 2
1 FLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFK 0
0 EWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVVIENSHTLYDLDR 2
1 IIELNGNKPPLTYKRFQAIISRMELPKKPVSSITSQQMEKCKAEIQENHDDVYGVPSLEEL 1
2 GFPMDGLAAAVWQGGEMEALARLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKK 0
0 VKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWECGVR 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVK 2
1 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 GLLASVPSCAEDLSGPVTDPASVQGCSTST 1
2 ALKPSQSGQASPKRKHEGIEEMCTEDLYKRAKVTGLHGPEIPSKSL* 0

>CRY2_anoCar Anolis carolinensis (lizard) XM_003214641
0 MAALPGPLGRCSVHWFRRGLRLHDNPALQAAIRDGGPVRCIYILDPWFAASSSVGINRWR 2
1 FLLQSLEDLDNSLRKLGSRLFVVRGQPTDVFPRLFK 0
0 EWRVTRLTFEYDSEPFGKERDAAIVKLAKEAGVEVITENSHTLYDLDR 2
1 IIELNGHKPPLTYKRFQTIISRMDLPKKPVASITHQQMEMCKTEIQDNHDETYGVPSLEEL 1
2 GFPTESLAPAVWLGGETEALTRLDKHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKK 0
0 VKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVR 0
0 VFDELLLDADFSVNSGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVR 2
1 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQLSRYRGL 1
2 CLLASVPSCMEDLSNPVADTSSSHGNCIGT 1
2 ASRQTHCGQTSPKRKHDVVQEYKEELYKRAKVVASQFAENPRQELVHHEMGN* 0

>CRY2_xenTro Xenopus tropicalis (frog) NM_001088670 AY049035 CX389867 11533577 discrepancies
0 MEGKPSVSSVHWFRKGLRLHDNPALLSALRGANSVRCVYILDPWFAASSSGGVNRWR 2
1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWGVSRLTFEYDSEPFGKERDAVIMKLAKEaGVEVVVENSHTLYDLDR 2
1 VIELNGHSPPLTYKRFQAIISRMELPRRPAPSVTRQQMEACRAEIKRNHDETYGVPSLEEL 1
2 GFHsEiKGpsIWPGGETEALARLDRHLERK 0
0 AWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLKELYKK 0
0 VKKNSPPPLSLYGQLLWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVK 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVR 2
1 RYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYPKPIVNHAEASRMNIERMKQTYQQLSRYRGL 1
2 CILASVPSCMEDLGGPMADSSQNISE 1
2 AGKMAPPSHTSGESVLAAQYTAGI* 0

>CRY2_ranCat Rana catesbeiana (bullfrog) GO458565 AY256684 extra SS removed
0 MEGPAVSSVHWFRKGLRLHDNPALLAALRGARCVRCVYILDPWFAASSSGGVNRWR 2
1 FLLQSLEDLDSSLRKLGSRLFVGRGQPADVFPRLFK 0
0 EWGVTRLTFQYYSEPFGKERDAAIMKLAKEAGVEVIVESSHTLYDLDK 2
1 IIELNGNSPPLTYKRFQAIVSRMELPRRPVPSITRQQMEKCRAEIKSTHDDTYGVPSLEEL 1
2 GFPRDNPGAAVWPGGETEALARLDRHLERK 0
0 AWVAHYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLRELYQK 0
0 VKKNSPPPLSLFGQLLWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPEALAKWTEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVK 0
0 VFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVR 2
1 RYLPVLKGYPSRYIYEPWNAPESVQKEAKCIVGVDYPKPVVNHAEASRLNIERMKQTYQQLSRYRGL 1
2 CILASVPSSVEDLSGPMADPASSQQGSS 1
2 DPAPRLCAVDSPKRKHEDLDGELCKKARLQCVQEMERAAKDFL* 0

>CRY2_lepOcu Lepisosteus oculatus (spotted_gar) AHAT01038797
0 MVVNSVHWFRKGLRLHDNPALQEALNISDTVRCVYILDPWFAASANVGINRWR 2
1 FLLESLEDLDASLRKLNSRLFVVRGQPADVFPRLFK 0
0 EWNVTHLTFEYDSEPFGKERDAAIMKLARESGVETIVQESHTLYSLDR 2
1 IIELNNNSPPLTFKRFQAIVSRLGLPKKPLGTVTPQQMERCHTPISENHDECYRVPTLEEL 1
2 GFKTHGLSPSIWKGGETEAVRRLNKHLERK 0
0 AWVASFERPKINVYSLIASPTGLSPYLRFGCVSCRLFYYSLLELYKK 0
0 VRKSSSPPLSLFGQLLWREFFYTAATNNPKFDQMEGNPICVQIPWDRNPEALAKWAEGRTGYPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGMR 0
0 VFEELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYIPKLKEYPNRYIYEPWNAPEIVQKAANCVIGVDYPKPMINHAQASRLNIERMKQIYQQLSHYKGL 1
2 GLLASVPSVPDDARSPVTDDPHGHSS 1
2* 0

>CRY2_latCha Latimeria chalumnae (coelocanth) AFYH01005158 AFYH01005161 AFYH01005164
0 MVVNSVHWFRKGLRLHDNPALQEALKGADTVRCVYMLDPRFAGSSNLGINRWR 2
1  0
0 EWNVTRLTFEYDSEPFGKERDAVIIKVARESGVEVIMRDSHTLYNLNR 2
1 IIELNGHKPPLTYKRFQAIISRMELPRRPVAAVTQQQMETCKTDIGNDHDEQYGVPSLAEL 1
2 GFQVENDPAIWQGGETEALARLEKHLDRK 0
0 AQVANFERPWINANSLLANPTSLSPYLRFGCLSCRLFYYRLLELYKK 0
0 IKGNSSPPLSLYGQLLWREFFYTAATNNPRFDRMEGNPICVQIPWDSNPKALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHSVACFLTRGDLWISWECGMK 0
0 VFEELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDFVR 2
1  1
2  1
2 * 0

>CRY2_danRer Danio rerio (zebrafish) aka CRY3 NM_131786
0 MVVNSVHWFRKGLRLHDNPALQEALNGADTVRCVYILDPWFAGSANVGVNRWR 2
1 FLLESLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFK 0
0 EWNVTRLTFEYDSEPYGKERDAAIIKMAQEYGVETVVRNTHTLYNPDR 2
1 IIEMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQMARCRTQISDNHDEHYGVPSLEEL 1
2 GFRTQGDSLHVWKGGETEALERLNKHLDRK 0
0 AWVANFERPRISGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMK 0
0 LRRRSSPPLSLFGQLLWREFFYTAGTNNPNFDHMEGNPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 2
1 RYIPKLKDYPNRYIYEPWNAPESVQKAANCIVGVDYPKPMINHAESSRLNIERMKQVYQQLSHYRGL 1
2 SLLASVPTIQEEAEPPMSDDSQASSSST 1
2 GQASSPPHLSITAPSTPPLSESSSPNSSPTASTSVPHTQRKRVRPSETPSKQKTKVKHTSQARGLELKMDDKQ* 0

>CRY2_oreNil Oreochromis niloticus (tilapia) XM_003449249 split exon 7 also in gasAcu, oryLat, tetNig not danRef or lepOcu
0 MVVNSVHWFRKGLRLHDNPALQEALNGADAVRCVYILDPFFAGAANVGINRWR 2
1 FLLEALEDLDSSLKKLNSRLFVVRGQPTDVFPRLFK 0
0 EWNVTRLTFEYDPEPYGKERDGAIIKMAQEFGVETIVRNSHTLYNLDR 2
1 IIEMNNNSPPLTFKRFQTIVSRLELPRRPLPPITQQQMDKCHTKIGDNHDQLYSIPSLEEL 1
2 GFRTAGLPPAVWRGGESQALDRLSKHLDKK 0
0 VWVTSLEHPRVNTCSLYASPTGLSPYLRFGCLSCRVLYYNLRELYMK 0
0 VRKRCSPPLSLFGQLLWREFFYTAATNNPNFDRMDGNPICVQ 0
0 IPWDQNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPTGDYIR 2
1 HYIPILKDYPNRYIYEPWNAPESLQKAANCVVGVDYPKPMINHAESSRLNIERMKQVYQQLSHYRGL 1
2 SLLASVPTIQEEAEPPMTDESQTSSGP 1
2 DSPQRVPANTEGAGCYEAPDSSTVCPSSTSAPHPDQEHQAPCISSGCHTDPS* 0

>CRY2_tetNig Tetraodon nigroviridis (fugu) CAAE01010345
0 MVVNSVHWFRKGLRLHDNPALQEALSGADSLRCVYVLDPWFAGAANVGINRWR 2
1 FLLEALEDLDCSLKKLNSRLFVVRGQPTDVFPRLLK 0
0 EWKVTRLTFEYDPEPYGKERDGAIIKMAQQFGVETIVRNSHTLYNLDR 2
1 IVEMNNNSPPLTFKRFQTIVSRLELPRRPLPSVTQQQMDKCGTPVADNHDQLYSIPSLEEL 1
2 GFRTGGLAPAVWRGGESEALERLRKHLEKK 0
0 VWVSHLEHSRANTCSLYASPAGLSPYLRFGCLSCRVFYYNLREHYIR 0
0 LCKGCSPPLSLFGQLLWREFFYTAATNNPNFDRMAGNPICVQ 0
0 IPWDQNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHQARRASACFLTRGDLWISWECGMK 0
0 VFEELLLDADWSVNAGSWMWLSCSAFFQQFFKCYCPVGFGRRTDPSGDYIR 2
1 RYIPILKDYPNRYIYEPWNAPEAVQKAANCVVGVDYPRPMINHAEGSRLNIERMKQVYQQLSHYRGL 1
2 SLLASVPTIQEEADTP 1
2 * 0

>CRY2_takRub Takifugu rubripes (fugu) HE592015
0 MVVNSVHWFRKGLRLHDNPALQEALSGADSLRCVYVLDPWFAGAANVGINRWR 2
1 FLLEALEDLDCSLRKLSSRLLVVRGQPTDVFPRLLK 0
0 DWKVTRLTFEFDPEPYGKERDGAIIKLAQQFGVETIVRNSHTLYNLDR 2
1 IIEVNNNSPPLTFKRFQTIVSRLELPRRPLPTVTQHQIHKCGAKMADSQEQLYSIPSLEEL 1
2 GFRTEGLPPAVWRGGESEALERLHKHLDKK 0
0 VWVANLEHSRVSTCSLYASPAGLSPYLRFGCLSCRVLYYNLRELYVK 0
0 LRKGCSPPPSLFGQLLWREFFYTAATNNPNFDRMEGNPICVQ 0
0 IPWDQNPEALAKWAEGHTGFPWIDAIMTQLRQEGWIHHQARRAVACFLTRGDLWISWE 0
0 VFEELLLDADWSVNAGSWMWLSCSAFFQQFFKCYCPVGFGRRTDPSGDYIR 2
1 RYIPILKDYPNRYIYEPWNAPEAVQKAANCVVGVDYPRPMINHAEGSRLNIERMKQVYQQLSHYRGL 1
2 SLLASVPTIQEEAEPPMTDEFQNSSGP 1
2 * 0

Invertebrate cryptochromes

>CRY1B_strPur Strongylocentrotus purpuratus (sea_urchin) XM_001183029 echinoderm lacks final 2 exons
0 MPGGACIHWFRHGLRLHDNPALLEGMTLGKEFYPVFIFDNEVA 1
2 GTKTSGYNRWRFLHDCLVDLDEQLKAAGGRLFVFHGDPCLIFKEMFL 0
0 EWGVRYLTFESDPEPIWTERDRRVKALCKEMKVECIERVSHTLWNPDI 2
1 IIEKNGGTPPITYSMFMECVTEIGHPPRPMPDPILTKVNMKIPSDFEERCALPSLEVM 1
2 GVNMECTEQEKKVWKGGETRALELFRVRILHEEE 0
0 AFKGGYCLPNQYMPDLLGTPKSLSAYLRFGCLSVRRFYWKIHDTYSEVRS 0
0 EVSPSHLTAQVIWREYFYTMSVGNIHFNKMKENPICLNIEWKEDDEKLKAWTD 0
0 GRTGYPWIDACMKQLKYEGWIHQVGRHATACFLTRGDLWISWEDGLQ 0
0 VFDKYLLDADWSICAGNWMWISSSAFEKFLQCPNCFCPVRYGRRMDPTGEYVR 2
1 RYLPVLKDMPIRYLFEPWKAPRAVQERAKCIVGKDYPMPVVEHKSASAANHEQMEKVVNKLRDT 1
2 GIVHCAPSTQREVREFVWLPEKMAGGGSCRADQNCEGILGL* 0

>CRY1B_lytVar Lytechinus variegatus (sea_urchin) AGCV01081039 echinoderm many small contigs
0 MPGGACIHWFRHGLRLHDNPALLEGMTLGTEFYPIFIFDNEVA 1
2 GTSTSGFNRWRFLHDCLADIDEQLKAGGGRLFVFQGDPCHVFKEMFL 0
0 EWGVRYLTFESDPEPIWTERDRKVKALCKEMNVECIERVSHTLWNPDI 2
1 IIEKNGGTPPITYSMFMECVTEIGHPPRPMPDPIFTKVKMNVPADFEERFSLPSLEAL 1
2 GVRLECPEQEKKVWKGGETRALELFRVRILHEEE 0
0 AFKGGYCLPNQYMPDLLGTPKSLSAYLRFGCLSVRKFYWKIHDTYSEVRS 0
0 EVSPSHLTAQVIWREYFYTMSVGNIHFNKMKENPICLNIEWKKDDEKLEAWTE 0
0 GRTGYPWIDACMKQLKYEGWIHQVGRHATACFLTRGDLWISWEDGLR 0
0 VFDKYLLDADWSICAGNWMWISSSAFEKFLQCPNCFCPVRYGRRMDPTGEYVR 2
1 RYLPVLKDMPIRYLFEPWKAPRAVQERAKCIVGKDYPMPIVEHKSASAANTEQMEKVINRLRDS 1
2 GIVHCAPSTQKEVREFVWLPEKMAGGGSCRADQNCEGILGL* 0

>CRY1B_parLiv Paracentrotus lividus (sea_urchin) AM599080 echinoderm many transcripts
0 MPSGACIHWYRHGLRLHDNPALLEGMTLGTEFYPIFIFDNEVA 1
2 GTRTSGYNRWRFLHDCLQDLDDQLKEAGGRLYVFHGDPCLVFKEMFI 0
0 EWGVRYLTFESDPEPIWTERDLKVKALCKEMNVECIERVSHTLWNPEI 2
1 IIEKNGGTPPITYSMFMECVTEIGLPPRPMPDPVLNKVTFKIPPDFEERFALPSLEKM 1
2 GVNMECKEQERKIWKGGGTRALELFKVRILHEEE 0
0 AFKGGYCLPNQYMPDLMGTPKSLSAYLRFGCLSVRKFYWKIHDTYSELKN 0
0 EVSPSHLTAQVFWREYFYTMSVGNIHFNKMKENPICLNIEWKKDDEKLEAWTE 0
0 GPTGYPWIDACMIQLKYEGWIHQVGRHATACFLTRGDLWISWEDGLK 0
0 VFDKFLLDADWSICAGNWMWISSSAFEKFLQCPNCFCPVRYGRRMDPTGEYVR 2
1 RYLPVLKDMPIRYLFEPWKAPRAVQERAKCIVGKDYPMPIVEHKSASAANHEMMEKVINRLRDS 1
2 GIVHCAPSTQKEVREFVWLPEKMAGGGSCRASQNCEGRTGSDGVGRGRTGDR* 0

>CRY1B_aplCal Aplysia californica (sea_hare) FF067636 AASC02010117 scaffold_151 mollusc
0 MEENDTKSHVSVHWFRHGLRLHDNPALLDSLENCREFYPVFILDGNVA 1
2 GISSAAFPRMQFLFETLQDLDDNLRSHGSRLFVLRGKPVDVFAKMFE 0
0 EWGVTRLTFEQDPEPVWQERDNSVKALCDKQNVEWIERVSHMLWEPRL 2
1 ILEENGGEPPLTYAMFNQVAQVVGPPPKPVGDPDFSGISLPCRKDDEESYKLPSLEEI 1
2 GIRPESEEQASPFGRYLG GETKALKLLSSRLEKEHE 0
0 AFSIGQCLPTQLNPNLIGMPMSLSPHLRFGSLSVRKFYWSLRDTFSQ 0
0 lfpdrpvPGSITSQLVWREYFYCMSVNNPMYNRMKENPICLDIDWYDDEQKFEKWKK  0
0 GQTGFPWIDACMRQLLQEGWIHQVCRHAVACFLTRGDLWIDWQKGLK 0
0 VFDRYLLDADWSVCAGNWMWVSSSAFEKVLQCPRCICPVRYGKRNDPTGAYVR 2
1 RYVPELKRMPLQYLFEPWKAPLKLQEEVDCIIGKDYPEPMVDHRTASKECKTKMEAIKKVSK 1
2 DVPHIAPANEEEVLTLMWSGKQTRSELMDACTHNLDKIWCVWSLSFVYTLSVNLKAYKKFFNPYSC* 0

>CRY1B_octVul Octopus vulgaris (octopus) JR450373 transcript assembly mollusc
0 MKLEKKQKIAVHWFRHGQRLHDNPALLDALKDCDEFYPVFIFDGEVA 1
2 GTKLCGFNRWRFLLENLKDLDESFSEYGGRLYTFQGKPVEVFANLQN 0
0 EWGITHITAEIDPEPIWQERDDAVKEFCQKSGIKCDFFNSHTLWDPKR 2
1 LLKKNGGTPPLTFELFQLVTSSLGPPPRPIDAPTFEGIKMPLPENHDKFSVPTLKSL 1
2 GIYPEFEEQKNPINVFIG GEKRALVLLKARLEKEAQ 0
0 SFRHGQCLPNHQEQPELLARAVSLSPYLRFGCVSIRKTYWDICDTYKR 0
0 IKKVEAPKEIVCQLYWREYFYIMSIDNINFDKIENNPYCLKINWQYNEEFLKKWEM 0
0 GQTGYPWIDAIMNQLRFEGWNHHVGRHAVSCFLTRGDLWVSWEDGLK 0
0 LFLKYQLDADWSVCAGNWMWVSSSAFEKALQCPTCYSPVMYGMRMDKNGDFVKTYVPVLKDMPL 2
1 KYLFCPWKAPLEIQEKANCIIGKDYPEPIVMHRDASKQNMAKMYKVKEHLLHQ 1
2 DVPHCGPTNETEVWKFAWLPPIEHHDLAHNI* 0

>CRY1B_craGig Crassostrea gigas (oyster) GQ415324 HS189569 mollusc
0                 GLRLHDNPSLIDGLSECDRFYPVFIFDGEVA 1
2 GTKTAGYNRFRFLLECLQDLDKNLKAAGTRLYCFQGQPTDILERLIE 0
0 EWGVTKVTFEADPEPIWQERDRLVRELLDKKNVQCVEKVSHTLWDPYE 2
1 IIENNGGSPPLTFSLFNLVTSTIGPPPRPVEDPDFTDISLPVSQNHDKQFGIPSLEDL 1
2 NVRPECEEQNKRLVEWLGGESKALELLAIRMKHEE 0
0 KAYENGYVMPNQYHPDLLSPPLSLSAHLRFGCLSVRKFYWSIHDKFEE 0
0 VKPSMGAPVSLSAQLMWREYFYTMAINNINYDKMETNPICLNIPWYDNPEHEEKWTQ 0
0 GETGYPWIDAIMKQLRYEGWVHHVARHAVSCFLTRGDLWLNWEVGLK 0
0 VFYKYLLDADWSVCAGNWMWVSSSAFEKVLQCPNCFCPVRYGKRMDPSGEYVR 2
1 RYLPVLKDMPLRYLFEPWKAPLPVQQKAKCIVDYPKPMVDHQKASKECIQNMKAVKDALIGK 1
2 EIPHCAPSEEIEARRFSWLP* 0

>CRY1B_rudPhi Ruditapes philippinarum (clam) JO113369 mollusc
1 RYLYEPWKAPKAVQEKANCVVGVDYPYPIVEHNKASKECYNLMMEVKNKLVQQ 2
1                     GKDLEHCRPTNVEEVRMFVWMPGAHKGACGQEVPLDDKELCDGLSIM* 0

>CRY1B_vilLie Villosa lienosa (mussel) JR510441 transcript assembly mollusc fragment
0  1
2 GTSTAAFDRMRFLLECLHDLDESFKKFGGRLFVFHGKPKAIFTQLFE 0
0 EWGVTKLTFEQDPEPVRKARDNEIKQLCYEKGVTCIECISHTLWDPKQ 2
1 IIEANEGCPPLTYEIFRQVTSVLGPPPKPLDIPDFSKIKIPVQHNHAELYGIPCMAFL 1
2 GINPDCQEQLQRVHEWVG GETKGQELLGVrIKVERK 0
0 AFEEGIALPNQVHPDLLGTPRTLSPHLRFGCISVRKFYWCLYSQYCEV 0
0  0
0   YPGETPPHSIYGQLLWIHHVCCHAVSCFLTHRDLWISWEEEIK 0
0  2
1  1
2 * 0

>CRY1B_lymSta Lymnaea stagnalis (snail) ES576734 mollusc
0 MSDSERKSHVTVHWFRHGLRLHDNPALLDGLEDCREFYPVFIFDGSVA 2
1 GTSNVALPRMQFLLETLKDLDDNLKGLGTRLYVFKGDPVEVFDKLIE 0
0 EWGVTRITFEQDPEPVWQERDNSVKDLCAKQGVEWIERVSHTLWDPQL 2
1 IIKENGGSPPLTYAMFCQVTEIVGQPPTPRDDPDFEGITLPVCEDHDKKYHLPTLAQL 1
2 GVESESDQQTSPYCRYLGGESKALKLLATRLESERR 0
0 AFSLGQSLPNQLFPNLSGMPMSLSPHLRFG* 0

>CRY1B_plaDum Platynereis dumerilii (clam_worm) GU322429 annelid mRNA fragment
0               DGEVA 1
2 GTKLVSYPRMKFLLECLKDLDDSLKKHGGRLYVVKGPSDVVIKQLIE 0
0 EWGVTRVTCEIDPEPIWQPRDKAVKDLCATKGVKWFDYNSHLLWDPKAVCDANGGRPPHTYKLFC 0
0 QVTDLLGKPETPHPDPDFSHVQMPVSDDFDDKFGLPTLKEL 1
2 GCEPECEEQEKPFNKWQGGETGALELLETRLMIERTAYKA 2
1 GYIMPNQYIPDLVGPPRSMSPHLRFGALSIRK 2
1 FYWDLHNNYAEVCGGEWLGALT 1
2 AQLVWREYFYCMSYGNPSFDKMEGNPICLQIPWYKDEEALEKWKQGQ 2
1 TGFPWIDACMRQLRYEGWMHHVGRHAVACFLTRGDLWISWVDGLEAFYKYMLDGDW* 0

>CRY1B_dapPul Daphnia pulex (water_flea) ACJG01002273 FE370447 FE356368 crustacean
0 MNVLWFRRGLRIHDNPALLSALENSKDFIALFVFDTTFQ 1 
2 DPGYKPYHMNGFLLECLQDLNESLESVGTKLHVFQGCPLEVFRHLHNIKPINKLCFIQDCEPIFHERDIAAK 1
2 DLCSELDIEVYEHVAHTLWDPMDIIASNGGTPPLTYEMFV 2
0 HVAMSVGDPPKPVADPEWKGVKFLTLEPFESNRFT 0
0 LFGGVPTLSQIGVPENPVGCRGRRIF 1
2 ETNALKHFAIRLQAEETAFRSGFYQPNQARPDLLGPPLSLSAAISVGAISVRL 2
1 FYWRIHEIFDKVNRGNPPAWLGITGQIIWRDYFYAMSRMNPKFDKEVDNPICLQIPWVENEEFFEKWKNGQTGYPFIDAGMRQLNQE 1
2 GWMHHSVRNAVAMFLTRGDLWLNWDIGAEYMANQLVDSDWSVNSGNWMWVSSSAFERLLDCSVCINSVLYGKRLEPSGDYIRRYVPELANFEFEYIHEPWKAPINIQRTANCII 1
2 GQDYPAQMVVHEEVLPRNLEWMKEFRQKFKETPAHCQPSSNSEVYKFFCLPDDSLPF* 0

>CRY1B_diaNig Dianemobius nigrofasciatus (cricket) AB291231 orthoptera
0 MDNRSNVHKKVAVHRFRHGLRLHDNPALLDAVKDCDAFLPIFIFDGESAGTKLVGYNRMKFLLESLQDIDSQLKKYGGNLYLFHGTPLCVFQYISQTIGLHK
LCFEQDCEPIWQHRDDLVKKFCKENGIKCIERVSHTLWNPHDVIKTNGGIPPLTFEMFVHTVSVIGPPPRPVEDVEWSVVNFGVLPMSSIPSDIKVFKNFPTPEDFGISSEVGNMNR
IIQWIGGESQALRHLQERLKVEENAFREGYCLPNQARPDLLGPPTSQSAALRFGCLSVRKFYWSIQDMYSSICGPSPNQNITSQLIWREYFYTMSVGNEYYAEMDRNPICLNI
PWKNDYGSDFNKWKEGKTGYPFIDAIMRQLIQEGWIHHVARNAVACFLTRGDLWISWEEGLNFFLQYLLDADWSVCAGNWMWVSSSAFEQLLDCSHCMCPVNYGRRLDPWGQYI
KRYIPELKNYPVEYLYEPWKAPLHVQETAGCIVGKDYPERIIDHQIASEKNRSYMDEIRNRLMNPPPHCRPSSEKETRQFMWFPDDCSEHSSQ* 0

>CRY1B_acyPis Acyrthosiphon pisum (aphid) NM_001171061 ABLF02032292 HP303737 hemiptera
0 MTVAVHWFRNGLRLHDNPALIEAHNNAEKLITLFIFDETTF 1
2 NPKWYGYNPMRFLLdSLIDLNNNLALVGGRLYILQGNPVNIFKMIKEKIGLHFITYEQ 0
0 DCAHLGRTRDEKVKSFCDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQ 0
0 NTAKQIGHPPSPVGNVDWLSVIFEELPASIQDEFK 0
0 NLHNPTPETFGIYPEVPENLTSTYRWYGGETRALEQLKERLEYEKEAFVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRK 2
1 FYWELTKLFINKFEGDLLPMYSVTSQLIWRDYFYTMSIDNKNFGQIEDNPACISIPWNDIKIPENKKMLECWKTGKTGYPFIDAGMRQLMQ 0
0 EGWIHHVVRNSLASFLTRGDLWISWVEGLNHFMKYLLDADFSVCSGNWIWVSSSTFEQLLDCPLCVCPVSYGLRLDPSGEYIK 2
1 RYVPELKNMPAQFLYEPWKCPESVQKQVGCIIGKDYPNCIVDHTIASKGNRK 0
0 KMLALRVSMTNENRVPHCCPSDREEVQKFMYLPDECMQQLLPLENQDSKAYDIYKSH* 0

>CRY1B_danPle Danaus plexippus (butterfly) AY860425 AGBW01012954 lepidoptera
0 MLGGNVIWFRHGLRLHDNPSLHSALEDASSPFFPIFIFDGETA 1
2 GTKMVGYNRMRYLLEALNDLDQQFRKYGGKLLMIKGRPDLIFRRLWEEF 0
0 GIRTLCFEQDCEPIWRPRDASVRALCRDIGVSCREHVAHTLWNPDTVIKANGGIPPLTYQMFL 0
0 HTVEIIGNPPRPVDDVDLNGVNFGSLPESFYREFVVFDK 0
0 APKPEDLGVFLENEDIRMIRWVGGETAALKQMQERLAVEYETFCR 2
1 GSYLPTHGNPDLLGPPISLSPALRFGCLSVRR 2
1 FYWSLQDLFQQVHQGRLASTQFIT 1
2 GQLIWREYFYTMSVNNPNYAQMSGNPICLDIPWKEPENDELQR 2
1 WKEGRTGFPFVDAAMRQLRTEGWLHHVVRNTVASFLTRGTLWLSWEHGLQHFLKYLLDADW 2
1 SVCAGNWMWVSSSAFEALLDSGECACPVRLGRRLEPTGHYVRRYVPELARMPGEYIYEPWRAPLEVQEAAGCVIGRDYPAPVVDHTAAAARNRANMQELRRLLEKAPPHCCPSSEDEVRQFMWLGDDSQPELTTT* 0

>CRY1B_bomMor Bombyx mori (silkworm) NM_001195699 wrong BABH01015108 moth lepidoptera
0 MLGGSVLWFRHGLRLHDNPSLHSALEETSGPFFPIFIFDGETA 1
2 GTKVVGYNRMRYLLEALDDLDKQFKKYGGRLLLVKGKPSAVFRRLWEEF 0
0 GIRKLCFEQDCEPVWRPRDESVKTACREIGVTCREHVSHTLWEPDTVIKANGGIPPLTYQMFL 0
0 HTVATIGDPPRPVDNAKLRGIKFGTLPLCFYEEFTVYDK 0
0 VPNPEDLGVFLENEDIRMIRWVGGETAALKQMQHRLAVEYETFCR 2
1 GSYLPTHGSPDLLGPPISLSPALRFGCLSVRK 2
1 FYWSLQDLFQQVHQGSLCSTQYIT 1
2 GQLIWREYFYTMSVNNPHYGQMTDNPICLDIPWKSPEGDELER 2
1 WASGRTGFPFVDAAMRQLRLEGWLHHAVRNTVASFLTRGTLWLSWEHGLAHFLKYLLDADW 2
1 SVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARVPTEYI 2
1 YEPWKAPLDVQERANCIIGKDYPAPVVNHIVAAQRNRNAME 0
0 ELRMLLEKAPPHCCPSSEDEIRQFMWLNE* 0

>CRY1B_mamBra Mamestra brassicae (moth) AY947639 Glossata lepidoptera
0 MLGGSVLWFRHGLRLHDNPSLHSALEEKGFPFFPVFIFDGETAGTKVVGYNRMRYLLEALEDLDNQLKKHGGRLIMIKGKPNVVFRRLWEEFGIRRLCFEQD
CEPVWRARDDSVKSACKEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVSDIDFTGVKFGSLPESFYHEFTVYDKTPKPEDLGVFLENEDIRMIRWVGG
ETTALKQMQQRLAVEYETFLRGSYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLATQSASHFITGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPWKEP
EGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPEL
ARMPVQYIYEPWKAPIDIQERATCIIGKDYPAPVVNHLVAAQRNKNAMKWLGRSVAGRLDKEKWFELVGELRHFLQKAPPHCCPSSEDEIRQFMWLNE* 0

>CRY1B_helArm Helicoverpa armigera (cotton_bollworm) JN997418 moth lepidoptera
0 MLGGSVLWFRHGLRLHDNPSLHSALEEKGFPFFPIFIFDGETAGTKLVGYNRMRYLLEALDDLDSQFKKFGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQD
CEPVWRARDDSVKSACKEIGVVCREHVSHTLWEPETVIKANGGIPPLTYQMFLHTVATIGDPPRPVPNIDFTGVKFGSLPECFYQEFTVYDKTPKPEDLGVFLENEDIRMIRWVGG
ETTALKQMQQRLSVEYETFLRGSYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWAVQDLFRQVHQGRLTTNSASHFITGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPWKNP
EGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPEL
ARMPVEYIYEPWKAPIDVQERATCVIGKDYPAPVVNHLVAAQRNKNAMKELRHMLQKAPPHCCPSSEDEIRQFMWLNE* 0

>CRY1B_droMel Drosophila melanogaster (fruit_fly) AB019389 diptera PubMed:22080955 PDB:3TVS
0 MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESA 1
2 GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFL 0
0 HTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALlLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLS
VRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNdICLSIPWAKPNEnLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGG
LWQSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFV 2
1 HEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLITPPPHCRPSNEEEVRQFFWLADVVV* 0

>CRY1B_anoGam Anopheles gambiae (mosquito) DQ219482 diptera PubMed:16332522
0 MTINNILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESA 1
2 GTRIVGYNRMKFLLESLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKLCYEQDCEPIWKERDDAVAKLCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFL 0
0 HTVNIIGDPPRPVGAPNFEYVEFGRVPALLASELKLCQQMPAPDDFGIHYDGNARI
AFQKWIGGETRALEALGARLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVHDLFAKVQSNSQFKYPGGHHITGQLIWREYFYTMSVQNPHYGEMERNPIC
LNIPWYKPEDDSLTRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITAT 2
1 FLTRGGLWLSWEEGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSKCTCPIALARRLDPKGDYVKRYLPELANYPAQFV 2
1 HEPWKASREQQIEYGCVIGEKYPAPMVDLAIVSKRNAHTMASLREKLVDGGSTPPHCRPSDIEEIRQFFWLADDAATEA* 0

>CRY1B_neoBul Neobellieria bullata (fleshfly) FJ373353 diptera
0 MSLNIIWFRHGLRLHDNPALLDAISDKDEGIELLPIFIFDGESAGTQSVGYNRLKFLLDSLEDINNQLRSVSLSLGRLYIMKGNPVQIFRSLHEQRGIKKLC
FEQDCEPIWNRRDNAVKNLCHDLGITCIERISHTLWDPKKVINTNGGIPPLTYQMFLHTVQIIGLPPRPVPDPDWHNVKFVKLSEKLIKDLGVFLESPTPEDFSVYPDSLSYLAKV
KWIGGETQALLHLDQRLKVEESAFKCGYYLPNQAKPNILESPKSMSAHLRFGCLSVRKFYWDVHDLFKDVQQQAECLGMLMSGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEIC
LNIPWAETNHIQLQRWTQGKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEHGLRYFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPIALAKRLDPMGQY
IKQYVPELANVPKEYIHEPWRMPMNIQEDSDCVIGIHYPERLIDLNVACKRNTIAMRTLRNALIAEGAPDNGPPHCRPSNEEEIRNFFWLAD* 0

>CRY1B_bacCuc Bactrocera cucurbitae (melon_fly) AB517608 diptera
0 MTKRANVLWFrHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLADIDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYR
LNKICFEQDCEPIWNRRDDSVRSLCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVEIIGVPPRPVEDPDWDGVEFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVS
YVAKVKWHGGEQQALLHLDERLKVEERAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWSVHDLFKHVQIEALRQRVHMAGGEHITGQLIWREYFYTMSVNNPYYDRME
GNAICLNIPWAAPNKEQLQSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLD
PKGEYIRQYVPELANVPQEYIHEPWRMPQELQENCECVIGVQYPERIVDLANVSKRNVxAMQTLRQSLIAGGAPDEGPPHCRPSNEEEVHQFFWLVE* 0

>CRY1A_dapPul Daphnia pulex (water_flea) FE418063 FE356487 ACJG01001137 crustacean
0 MYRQQKNIMSGYDSEPREKQVVHWFRKGLRLHDNPSLKDGLKGCSTYRCIFILDPWFAGSSNVDINKWR 2
1 FLLESLEDLDQNLRKLNSRLFVIRGQPAGVLPKLFK 0
0 EWETTCLTFEEDPEPFGRVRDQNIITMCKDFNIEVITRASHTLYHPQK 2
1 IIEKNGGKAPLTYRQFQNIIASVDAPPPPESDITFESIGRGYTPMDESMDDRFSVPTLEEL 1
2 GFDTDGLMPAVWHGGETEALTRLERHLERK 0
0 AWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSVRLFHQQLTNLYKKIKKAQPPLSLHGQVLWREFFYCAATNNPNFDKMIGNPICVQIPWDSNAEALAKWAN 0
0 GQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGTWMWLSCSSFFHQFFHCYCPVRFGREVDPNGDFIK 2
1 KYQPVLKNFPLQYIHEPWNAPESVQRAAKCVIGKDYPLPMVNHLEVSQLNIERMKQVYQRLTQYRGT 1
2 GLMSHSPQSDNGIIINVGNKNKNENSHAKQFRTDELRQNAVQRNQSNLN* 0

>CRY1A_eupSup Euphausia superba (krill) FM200054 contig crustacean
0 MTRGGEKHVVHWFRKGLRLHDNPTLKAGLKGATTFRGIFIIDPWFAGSSNVGINKWR FLLQCLEDLDTTLRKLNGRLFVVRGQPAHVLPQLFK TWGTTCLTFEKDPEPFGKVRDANITHIAREMGIQVIIKTSHTLYKLEK 2
1 IISKLPLTYKTFQNVLSTMEPPPLPASPVTVRDVGDAFTPIDEDHDEKYGVPTLEEL 1
2 GFETENLAPSIWKGGESEALARLEHHLERKAWVASFGRPKMTPQSLYPSRTGLSPYLRFGCLSARRFFAELNDLYRK 0
0 IKKSPAPLSLHGQLLWREFYYTAATNNPKFDHMEGNPICVQIPWDKNAEALAKWAH 0
0 GRTGFPWIDAIMSQLRKEGWIHNVARHAVACFLTRGDLWVSWEEGMK 0
0 VFDELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVRYGRKADPNGDYIR 2
1 TYLPVLKNFPTKYIHEPWTAPENVQKQSKCVIGRDYPMPMVDHVKQSQANLMRMKQVYQQLSHYRVTPPKITSLLKSCPPPLPVICDKSKNTKNNKNEITRESNYTQQMQPA* 0

>CRY1A_pedHum Pediculus humanus (louse) XM_002430500=wrong AAZO01005932 phthiraptera very similar intron pattern to vertebrate but lacks last 4 exons
0 MSDNSSQNSGKHTVHWFRKGLRLHDNPSLREGIKNSVTFRCVFVIDPWFAGSSNVGINKWR 2
1 FLLQCLEDLDRSLRKLNSRLFVIRGQPADTLPKLFK EWGTTNLTFEEDPEPFGRVRDLNIMAMCKELGISVVSKSSHTLYKLEH 2
1 IIEKNGGNPPLTYHQFQTIIANIGPPPEPEETVTANLLEGSQTPLSDDHDNKYGVPTLEEL 1
2 GFETDKLKPTVWSGGESEALARLERHLERK AWVASFGHPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLVELYKK 0
0 IKKAMPPLSLHGQLLWREFFYCAATKNPNFDKMNENPICVQIPWDENAQALAKWAN 0
0 GQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIR KYLPILKNFPTKYIHEPWLAPETEQRAAKCIIGKDFPLPMVNHSIVSKINIERMKQVYRQLSKYRSQGT* 0

>CRY1A_acyPis Acyrthosiphon pisum (aphid) NM_001171102 ABLF02035823 hemiptera cry2-2 PubMed:20482645 end uncertain
0 MQNKHTVHWFRKGLRIHDNPSLREGLINAKTFRCIFILDPWFAGASNVGINKWR 2
1 FLLQCLSDLDNSLKKLNSRLFVIKGQPAEALPKLFR 0
0 QWGTTNFTFEEDPEPFGRVRDQNIKVMCSEMGISVITRCSHTLYQLDK 2
1 IINVNGGKAPLTYHLFQKLLECIDPPERAVPSIDKEFLGNAFTPIKYDHDEIFGVPTLEEL 1
2 GFKEINNITRHVWVGGETEALIRLQCHLERKAFIASFGKPKMTPQSLVASPTGLAPYLKFGCLSTRLFFSELNELYKK 0
0 IRKSQPPLSLHGQLLWRDFFYCASTNNPNFDRMVGNPICVQIPWDKNPRALSKWAN 0
0 GQTGYPWIDAIMIQLRQEGWIHCIARHAVACFLTRGDLWLSWEEGMK 0
0 VFDELLLDADWSVNAGYWMWYSCSSFYQEFIHCYCPVRFGRKVDPNGDYIR 2
1 RYIPALNNMPNQYIHEPWLAPESIQFSANCIIGIDYPLPIVNHINASKINLERMKLAYQQLSN 1
2  1
2  * 0

>CRY1A_ripPed Riptortus pedestris (bean_bug) AB379863 hemiptera PubMed:18547745
0 MSEKHTVHWFRKGLRLHDNPSLRHGLNGAKTFRCIFILDPWFANASNVGINKWR 2
1 FLLQCLEDLDRSLMKLNSRLFVIRGQPADILPKLLKEWGTTCLTFEEDPEPFGRVRDQNIMAMCRGMNITVISLVAHTLYKLEC 2
1 IIERNGGRAPLTYHQFQSVVASMESPPLPVPPVTSTVVGDAVSPISDDHDEKYGVPTLEEL 1
2 GFDTEGLLPGVWQGGESEALSRLERHLERKAWVASFGKPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLNDLYRK 0
0 IKKAVPPLSLHGQVLWREFFYCAATKNPNFDRMIGNPICVQVPWDKNPEALAKWAN 0
0 GQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIR 2
1 KYLPVLKNMPTKYIHEPWNCPESVQKAAKCTIGVDYPLPMLNHSVVSKHNIERMKQVYLQLMKYRQP 1
2 GIPPSLNSD 1
2 AALEKKKKNEDNNFDDNIFATPSPTFKGTISK* 0

>CRY1A_triCas Tribolium castaneum (flour_beetle) AAJJ01000096 coleopetera
0 MSGVVGDAGRASKGQDKHMVHWFRRGLRLHDNPSLREGLKGARTFRCVFVLDPWFAGSSNVGINKWR 2
1 FLLQCLEDLDRSLRKLSRLFVIRGQPADALPKLFK
EWGTTALTFEEDPEPFGGVRDHNLTTLCQELGISVVQKVSHTLYHLQD
IIDRNGGRAPLTYHQFLAIIACMGPPPQPEPPVTFNSLNGAHTPLTDDHDEKYGVPTLEEL
GFDTEGRLPPVWQGGESEALARLERHLERK
AWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKK
IKKAFPPLSLHGQLLWREFFYCAATKNPNFDKMIGNPICVQIPWDKNAEALAKWAN 
0 GQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWLSWEEGMK 0
0 VFEELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPIKFGRKADPNGDYIR 2
1 KYLPVLKNMPSQYIHEPWTAPEQVQRAAKCIIGKDYSLPMVNHAAASRVNIQRMKQVYQQLSNYRNVDNSAKFKDGFQEQPNVVTVGNPSRK* 0

>CRY1A_bomImp Bombus impatiens (bumble_bee) EF110521 AEQM02008194 hymenoptera PubMed:17244599
0 MTGSRSSEINPDVTVRGEGGKHTVHWFRKGLRLHDNPSLREGLTGATTFRCVFVLDPWFAGSTNVGINKWR 2
1 FLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFK EWGTTNLTFEEDPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDE 2
1 IIERNGGKPPLTYHQFQNVVASMDPPEPSVPTVTSACIGSAYTPLKEDHDDHYGVPTLEEL 1
2 GFDTEGLLPPVWVGGESEALARLERHLERK AWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKK 0
0 IKKAVPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPWDKNVEALAKWAN 0
0 GQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIR 2
1 RYLPILKNFPTRYIHEPWNAPLSVQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQVYQQLNKYRGN 1
2 GASLKGETV 1
2 GLLNALPPPSVKENEEEKKKTKQSPPPPENQSKMEVLAKTTQHQQQHHQHQ* 0

>CRY1A_apiMel Apis mellifera (bee) NM_001083630 AADG06001305 hymenoptera
0 MTGSRSSEINPKEGLYDEGGKHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSTNIGINKWR 2
1 FLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFK EWGTTNLTFEEDPEPFGRVRDHNISALCKELGISVVQKVSHTLYKLDE 2
1 IIERNGDKPPLTYHQFQTVVASMDPPEPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEEL 1
2 GFDTEGLLPPVWVGGESEALARLERHLERK AWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKK 0
0 IKKAVPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPWDKNVEALAKWAN 0
0 GQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIR 2
1 RYLPVLKNFPTRYIHEPWNAPLNVQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQVYQQLNKYRGN 1
2 GVSLKGETV 1
2 GLLNALPPSSMKETEEEKKKTKQSLSPSENQSKMEILPKTTQRQHHH* 0

>CRY1A_attCep Atta cephalotes (ant) ADTU01021771 hymenoptera 
0 MGQAVTSGVRGDGGKHTVHWFRKGLRLHDNPSLKEGLAGASTFRCVFVLDPWFAGSTNVGINKWR 2
1 FLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTDLTFEEDPEPFGRVRDHNISALCKELGISVVQRVSHTLYRLDE 2
1 IIERNSGKPPLTYHQFQNVVAGMDPPEPPVPTVTAACIGSAYTPLKDDHDDHYGVPTLEEL 1
2 GFDTESLLPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKK 0
0 IKKAVPPLSLHGQLLWREFFYCAATKNPNFDKMQGNPICVQIPWDKNVEALAKWAN 0
0 GQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIR 2
1 RYLPVLKNFPTRYIHEPWNAPLSIQHAAKCIIGKEYSLPMVNHNKSSRINIERMKQVYQQLNKYRDN 1  
2 GTSFKGENI 1
2 GLLNALLASPTKDGDEEKRKQDSPNRENEQKMEAINSPTQQQ* 0

>CRY1A_exoRob Exoneura robusta (bee) HP928681 hymenoptera fragment
0 VFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIR 2
1 RYLPVLKNFPTRYIHEPWNAPLSVQRTAKCIVGKDYSLPMVNHSKSSRINIERMKQVYQQLNKYRGN 1
2 GTSLKGETV 1
2 GLLNSLPPPPVKKTEEEKKKTEQSPPRAENQMNMEALVKTTQHQQQHHHRQHQQRH* 0

>CRY1A_nylPub Nylanderia pubens (crazy_ant) JP792144 hymenoptera fragment
0 iKKAVPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPWDKNVEALAKWAN 0
0 GQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIR 2
1 RYLPVLKNFPTRYIHEPWNAPLSIQHTAKCIIGKEYSLPMVNHSKNSRINIERMKQVYQQLNKYRGN 1
2 GASFKGENI 1
2 GLLNALLAPPTDAEEEQRKQDSANRENEQKMETINNStqqq* 0

>CRY1A_nasVit Nasonia vitripennis (wasp) XM_001606355 AAZX01001169 hymenoptera N-term shortened
0 mGKKHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSANVSINKWR 2
1 FLLQCLEDLDRSLHQLNSRLFVIRGQPADALPKLFREWGTTSLTFEEDPEPYGRVRDENITTLCKELGITVVQRVSHTLYKLDE 2
1 IIEKNGGKPPLTYHQFQNVIARMDPPEYPAAAVTAACIGSAYTPLKDDHDDFFGVPTLEEL 1
2 GFDTEGLMAPVWVGGETEALARLERHLERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLADLYKK 0
0 IKKTIPPLSLHGQLLWREFFYCAATNNPNFDRMHGNPICVQIPWDKNVVALSKWAN 0
0 GQTGFPWIDAIMTQLREEGWIHQLARHAVACFLTRGDLWISWEEGMK 0
0 VFDELLLDADWSINAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIR 2
1 RYLPVLKNFPTRYIHEPWNAPLSVQRAAKCIIGQEYALPMVNHSKSSRINVERMKRVYQQLSKYRAN 1
2 GVSLKGETI 1
2 GLLSIVPTTPSLPFDQQQQQQDDDKKQQQNSLNVDNSPNNDCPASHLHQQQLQQHVHQHQYH* 0

>CRY1A_antPer Antheraea pernyi (silkmoth) EF117812 lepidoptera PubMed:17244599 dropped long C-terminus
0 MSAAAETLSAPRARSHVPAASLTSAPTPRRPHTKHTVHWFRKGLRLHDNPALREGLVNATTFRCVFIIDPWFASSSNVGINKWR 2
1 FLLQCLEDLDSSLKKLNSRLFVVRGQPADALPKLFR EWGTTALTFEEDPEPYGRVRDHNITTKCREVGINVISRVSHTLYKLDK 2
1 IIERNGGKAPLTYHQFQALIASMPPPQPAEAPISIETLNGAKTPVSVDHDDRFGVPTLEEL 1
2 GFETEDLKPPMWMGGESEALARLDRHLERK AWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYKK 0
0 IKRVRPPLSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPWEKNQEALSKWAN 0
0 GQTGYPWIDAIMIQLREEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFDELMLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKTDPNGDFIR 2
1 KYIPALKNMPTRYIHEPWVAPESVQQAAQCVVGCDYPLPMLDHTKASQINLERIKQVYAQLAKYKPQ 1
2 VTLQTVQRPNVMQSSPSPTSIIASINQSNLLCSTTPESQSAATQMIYKDPS* 0

>CRY1A_anoGam Anopheles gambiae (mosquito) DQ219483 diptera dropped long C-terminus
0 MRDKHTVHWFRKGLRLHDNPALREGLRGARTFRCVFIIDPWFAGSSNVGINKWR 2
1 FLLQCLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKELGIEVISAASHTLYNLER 2
1 IIEKNGGRAPLTYHQFQAIIASMDAPPQPEAAITLDVIGNANTPQYDDHDDKYGVPTLEELGFETEALRPPVWIGGETEA
LARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKACPPLSLHGQLLWREFFYCAATKNPTFDKMAGNPICVQIPWDRNAEALAKWASGQ
TGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLK 2
1 NFPTRFIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIASRANMERIKQVYQHLAKYRTPSGGCYEGDCTEKGGSAIAGVMTAAKVQHMNTSSMNDSPSPTTILTSVNSSGNYMCRSNPPAQSDHNGKI* 0

>CRY1A_aedAeg Aedes aegypti (mosquito) XM_001655728 diptera dropped long C-terminus
0 MTKQHNLVHQQKTTNTATSTIGSGGTGTGTNSSIGTQKQQHQQKHTVHWFRKGLRLHDNPALREGLKDAVSFRCVFVIDPWFAGSSNVGINKWR 2
1 FLLQCLEDLDRNLRKLNSRLFVIRGQPADALPKLFK EWGTTCLTFEEDPEPFGKVRDHNISEMCKELGIEVISAVSHTLYKLER 2
1 IIEKNGGRAPLTYHQFQAIIASMDAPPQPEPAITLDTIANATTPQYEDHDDKYGVPTLEELGFETEGLKPPIWVGGETEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLR
FGCLSTRLFYYQLTDLYKKIKKACPPLSLHGQLLWREFFYCAATKNPNFDKMAGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMK
VFEELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLK 2
1 NFPTRYIHEPWNAPETVQRTAKCIIGKEYPLPMVNHAIASRANMERIKQVYQQLAKYRSPSSSFDSECPEKGGSAIAGVMTAAKVQHMNASSLNDSPSPTTIMTNLNSSGNYMCRTIPPAQTDPNAKIITYHQ* 0

>CRY1_vilLie Villosa lienosa (mussel) JR505030 mollusc transcript assembly mollusc
0 MDEPPKKYVVHWFRKGLRLHDNPALCEAFKGASTFRCVYILDPWFAGVSQVGINKWR 2
1 FLLQCLEDLDSSLRKVNSRLFVIRGQPADVFPRLFK 0
0 EWQITSLSFEEDPEPFGKERDAAISAMAKEAGVEVIIRMSHTLFNLQK 2
1 IITENNGTPPLTFKRFQSILKTVGPPTKPVETVTLTTIGTARTPIENDHDDRYGVPSLEEL 1
2 GFDIDGLKPSVFQGGETEALLRLDRHLERK 0
0 AWVASFEKPKMTSQSLFPSQTTISPYLKFGCLSSRLFYWKLNDLYRR  0
0 VKKKSDPPLSLHGQLLWREFFYLAATNNPKFDRMVGNPICVQVPWDRNKEALAKWAEGKTGFPWIDAIMIQLREVGWIHHLARHSVACFLTRGDLWISWEEGMK 0
0 VFDELLLDADWSVNAGMWLWLSCSSFFQQFLNCYCPVGFGKRADPAGDFIR 2
1 HYIPQLKGFHPKYIYEPWTAPYEVQVAAKCIIGKDYPQPMVDHNEVSRQNMERMKQVYQVLAMRASG 1
2 VITKTLTDDTISKHPHSKISYITSCSNHISGNKPSKAAILLGGDSMNKHGHTSDEDNTGNSTN* 0

>CRY1_tetUrt Tetranychus urticae (spider-mite) CAEY01002034 chelicerate N-terminus uncertain
0  1
2 GLQGCDTFRCIYLIDPWFSTESNCGINKWR FLLQSLEDLDSNLHKLGSRLFVIRGQPAEVFPLLFK 1
2 EWMITHLSFEEDPEPFGKIRDAKIAKMCKEMNIEVICETSHTLYRLED IINHCSGEIPLTYLQFQNVISELGKPEEPAQAITHEVIGKAYTPVPRDHAKKYYTVLFQLIFD 1
2 GFTTQPNHRSVWVGGETEALQRLSRHLEHK AWVATFGKPKLTSLSLLCASQTGLGPYLR 2
1 FGCISPRLLYHQLSNLYSKLKKGNPPLTLCGQLLWREFFYCVATNNPNFDKMQNNPLCVQIAWNSNAEALNKWANGQTGYPWIDAIQTQLRREGWIHQIAKHATVCFLTRGILWISWEEGMK 0
0 VFDELLIDADWSVNAGTWMWLSCSSFFQRICHIYCPVSFGRKMDPQGDYIR RYLPVLRNIPNEYIHEPWKAPIKVQREANCKIGKHYPQPIVDHQEAMRINQERMKQVFRILIKGLDLKREDVQD* 0

>CRY1_aplCal Aplysia californica (sea_hare) scaffold_2275 mollusc small fragment
0  2
1  0
0  2
1  1
2  0
0  0
0   GMTGFPWIDAIMVQLKKEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFDEMLLDADWSVNAGMWMWLSCSAFFQQFFHCYCPVGFGKRADPSGDFV 2
1 HYLPVLKAMPTKYIYEPWTAPESVQKVAKCIVGKDYPMPMVVHSDVSRINLERMRQVYKKRLVLQSS 1
2  * 0

Cryptochrome CRY4 sequences

>CRY4_galGal Gallus gallus (chicken) NP_001034685 CRY4 PumMed:19663499 synteny: ADIPOR1 UBE2T CRY4 LRIF1 DRAM2 CEPT1
0 MRHRTIHLFRKGLRLHDNPALLAALQSSEVVYPVYILDRAFMTSSMHIGALRWHFLLQSLEDLRSSLRQLGSCLLVIQGEYESVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRGLGEELGFQVLSLMGHSLYNTQR 2
1 ILELNGGTPPLTYKRFLRILSLLGDPEVPVRNPTAEDFQ 2
1 RCSPPELGLAECYGVPLPTDLKIPPESISPWRGGESEGLQRLEQHLADQ 0
0 GWVASFTKPKTVPNSLLPSTTGLSPYFSTGCLSVRSFFYRLSNIYAQ 0
0 AKHHSLPPVSLQGQLLWREFFYTVASATPNFTKMAGNPICLQIRWYEDAERLHKWKT 0
0 AQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGMK 0
0 VFEELLLDADYSINAGNWMWLSASAFFHHYTRIFCPVRFGRRTDPEGQYIR 2
1 KYLPILKNFPSKYIYEPWTASEEEQKQAGCII 12 GRDYPFPMVDHKEASDHNLQLMKQAREEQHRIAQLTR 1
2 DDADDPMEMKLKRDHSEESFTKTKAARMTEQT* 0

>CRY4_taeGut Taeniopygia guttata (finch) XM_002198497
0 MLHRTIHLFRKELRLHDNPVLLAALESSEALYPVYILDRAFLTSSMHIGALRWNFLLQSLEDLHKNLGQLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGAELGFEVLSLVSHSLYNTQR 2
1 ILDLNGGSPPLTYKRFLHILSLLGDPELPVRNLTAEDFQ 2
1 RCRAPEPGLAECYRVPLPVDLKISPESLSPWRGGETEGLRRLEQHLIDQ 0
0 GWVTSFAKPRTSPNSLLPSTTGLSPYFSMGCLSVRTFFYRLSNIYAQ 0
0 AKHHSLPPVSLQGQLLWREFFYTVASATPNFTQMAGNPICLQISWYKDAERLHKWKT 0
0 AKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADYSINAGNWMWLSASAFFHQYTRIFCPVRFGKRTDPQGNYIR 2
1 KYLPILKNFPSKYIYEPWTASEEEQKLAGCII 12 GQDYPFPMVNHKEASDHNLQLMKQVREEQHRTVQLTR 1
2 DDADDPMEIRVKRDHSEENISKGKVARTTE* 0

>CRY4_melGal Meleagris gallopavo (turkey) XM_003212851
0 MRHRTIHLFRKGLRLHDNPALLAALQSSEVVYPVYILDRAFMTSSMHIGALRWHFLLQSLEDLRSSLCQLGSCLLVIQGEYDAVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRALGEELGFEVLSLMGHSLYNTQR 2
1 ILELNGGTPPLTYKRFLHILSLLGDPEMPIRNLTAEDFQ 2
1 RCSPPELCLAECYRVPLPTDLKIPPESISPWRGGESEGLQRLEQHLADR 0
0 GWVASFTKPKTVPNSLLPSTTGLSPYFSMGCLSVRSFFYRLSNIYAQ 0
0 AKHHSLPPVSLQGQLLWREFFYTVASATPNFTKMAGNPICLQIRWYEDAERLHRWKT 0
0 AQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGMK 0
0 VFEELLLDADYSINAGNWMWLSASAFFHHYTRIFCPVRFGRRTDPEGQYIR 2
1 KYLPILKNFPSKYIYEPWTASEEEQKQAGCII 12 GRDYPFPMVDHKEASDHNLQLMKQVREEQYRTAQLTR 1
2 DDADDPMEMKLKRDHSEENLTKTKAARMTKQT* 0

>CRY4_pasDom Passer domesticus (sparrow) AY494987 16687285 fragment
0           KGLRLHDNPVLLAALESSEALYPVYILDRAFLTSSMHIGALRWNFLLQSLEDLHKNLGQLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGVELGFEVFSLVSHSLYNTQR 2
1 ILDLNGGSPPLTYKRFLHILSLLGDPEVPVRNVTAEDFQ 2
1 RCRAPDPGLAECYRVPLPVDLKISPESLSPWRGGETEGLQRLERHLTDQ 0
0 GWVTSFTKPRTVPNSLLPSTTGLSPYFSMGCLSVRTFFYRLSNIYAQ 0
0 AKHHSLPPVSLQGQLLWREFFYTVASATPNFTQMAGNPICLQICWYKDAERLHKWKT 0
0 AQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW         0
0  2
1  12  1
2 * 0

>CRY4_anoCar Anolis carolinensis (lizard) synteny: UBE2T CRY4 LRIF1 DRAM2
0  2
1 IVELNRGTPPLTYKRFLQILTTLGDPEMPVEDLTAENSQ 2
1 KLCPLPEEDLDECYRVPLPEDLGISKEHLSPWRGGETTGLQRLEEHMKNQ 0
0 GWIAKFTKPRTIPNSLLPSTTGLSPYFSLGCLSVRMFFYRLSKIYAQ 0
0 SKNHSLPPVSLQGQLLWREFFYTVASATPNFTKMVGNPICLQIEWYEDAEKLHKWKT
0 AQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDSDYSINAGNWMWLSASAFFHQYSRIFCPVRFGKRTDPEGHYIR 2
1 KYLPVLKNFPSKYIYEPWTAPAEAQREAGCII 12 GKEYPFPMVNHKEVSDNNLQLMKQVREEQYKTAQLTR 1
2 DDVDDPMEMGLKHRHSEEVTPKGKHARKAEEL* 0

>CRY4_xenTro Xenopus tropicalis (frog) NP_001123706
0 MPHRTIHIFRKGLRLHDNPTLVTALETSDVVYPVYILDRNFMTSSSVIGSKRWNFFLQSIEDLHCNLQKLNSCLFVIQGDYERVLREHVEKWNITQVTFDLEIEPYYKGLDERIRAMGQELGFEVVSMVAHTLYDIKK
1 ILALNCGKPPLTYKNFLRVLSMLGNPDKPARQITSEDFIK 2
1 CITPTKLAAEEYYRIPKPEDLGISKDCPTNWIGGESEALSRLEQHLEKQ
0 GWVANFKKPQTIPNSLLPSTTGLSPYFSLGCLSVRVFFHRLSNIYAQ 0
0 SKNHSLPPVSLQGQLLWREFFYTVASSTPNFTHMVGNPICLQIDWYKNEEQLQKWKE 0
0 AKTGFPWIDAIMTQLHNEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEEFLLDADYCINAGNWMWLSASAFFHHYTRIFCPVRFGKRSDPEGNYIR 2
1 KYLPVLKNFPAKYIYEPWTAPEEIQKQAGCLI 12 GKDYPLPMVDHKTASEHNLQLMRQVREEQQKTAQLTK 1
2 DIADDPMELNLKHPFKNDKECGLENNKVKRRCLEEMTAEDGTRQSDLVQSLDPCEVKVC* 0

>CRY4_latCha Latimeria chalumnae (coelocanth) AFYH01009222
0 MTHRTIHIFRKGLRLHDNPILLAALEFSRVVYPVYILDRKLLESGVIIGALRWRFILQSLEDLHRNLVKLNSRLFVIQGDYEQILREYVQKWTITQVTFDTEIEPFYKEMDKKVRLMGKEMGFTVLFSVAHALYDVAR 2
1 IVENNGGQPPLTYKKFLHVLSKLGDPERPVRDITVDDFQ 2
1 KCMPPNPGLKELFRVPLPEELGLQSEHNASWIGGESQGLQRLEQHLENQ 0
0 GWIAHFTKPRTIPNSLLPSTTGLSPYFTLGCLSVRNNFYRLSHIYAQ 0
0 SKSHSLPPVSLQGQLLWREFFYTVASATPNFTKMVGNPICLQIGWYEDPEGLRKWRT 0
0 AETGFPWIDAIMTQLRQEGWVHHLARHAVACFLTRGDLWISWEGGMK 0
0 VFEELLLDADYSMNAGNWMWLSASAFFHQYTRILCPVRFGKRTDPEGHYIR 2
1 KYLPVLKNFPSKYIYEPWTAPEEVQQQAGCVI 12 GKDYPFPMVNHKEVSKNSLHLMKQVREEQHKVTQLTR 1
2 DVADDPMEMRMKRKFPDDFKNKGIFSETAERSSTT* 0

>CRY4_lepOcu Lepisosteus oculatus (spotted_gar) AHAT01016726
0 MTHRTIHLFRKGLRLHDNPTLLGALESSAVLYPVFILDRAFMEEAMARGVLRWRFILQSLEDLDTRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQENGLQTYTCVSHTLYDVKR 2
1 IIKANGGEAPLTYKKFLHVLALLGAPETPARRITREDFR 2
1 CRTPTEEESEEKYRVPSLEDLGIVVESEALWVGGETEGLQRLEQHMQNQ 0
0 GWIENFTKPRTIPNSLLPSTTGLSPYFSLGCLSVRMFYHRLSNIYAQ 0
0 SKNHSLPPVSLQGQVLWREFFYTVAAATPNFTRMAGNPICLQIDWYKDQEALDRWKT 0
0 ARTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEEHLLDADYSVNAGNWMWLSASAFFHQYTRIFCPVRFGRRTDPEGHYLR 2
1 KYLPVLKNFPSQYIYEPWTAPQQVQLEAGCII 12 GKDYPLPMVNHREVSESNLALMREVRREQEKTAQLTR 1
2 DTADDPMEVGKKRACQREAETDRSDAFLEKPERAKRFSHAEGEAKALACSWPSETLRLPALGREVM* 0

>CRY4_danRer Danio rerio (zebrafish) BC164413 adjacency to lost CRY1 suggests relationship
0 MSHRTIHLFRKGLRLHDNPSLLGALASSSALYPVYVLDRVFLQGAMHMGALRWRFLLQSLEDLDTRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQENGLQTYTCVSHTLYDVKR 2
1 IVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIEDFQ 2
1 RCVTPVDVDRVYAVPSLADLGLQVEAEVLWPGGESHALQRLEKHFQSQ 0
0 GWVANFSKPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLNSIYAQ 0
0 SKNHSLPPVSLQGQVLWREFFYTVASATPNFTKMEGNSICLQIDWYHDPERLEKWRT 0
0 AQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWITWEEGMK 0
0 VFEEFLLDADYSVNAGNWMWLSASAFFHKYTRIFCPVRFGRRTDPQGEYLR 2
1 KYLPVLKNFPSQYIYEPWKAPEDVQLSAGCII 12 GKDYPRPIVSHIEASQRNLALMRQVRTEQQTTAELTR 1
2 DVADDPMEAGLKRELREEEGLLEEAESQCTSKRFSGSSDHKSRPCSWTPETLQLSELSGEVM* 0

>CRY4_braFlo Branchiostoma floridae (amphioxus) XM_002609457 wrong
0 MEVREQHNTIHWFRKGLRFHDNPSLLHALRTSHHVYPVFVMDLDFMKDFKIRSGANQWRFVIECLQDLDTRLRAYGLRLFVARGNAEAFFAEHFRKWNITQLTHDVETEHYHRFRDAAVRKIAVDEGVEVVNYVAHTLYNIDK 2
1 IIEYNGGSAPLTYRQFQKVLKDFGAPPQASETATAEHFASCSVPLEALRDERYNMVTLEELGMRCEHPSKFVGGETEGLRRVEKHLQNQ 0
0 GWVTQFEKPKTAPTSLLPSTTGLSPYFSFGCLSVRHFYHRLDKIYAK 0
0  1
2 AETGFPWIDAIMSQLQKEGWVHHLARHAVACFLTRGDLWISWEEGQK 0
0 VFEELLLDADYSVNAGNWMWLSGSAFYHQYTRIFCPVRFGKRTDPDGTFIR 2
1 AYLPVLKDFPAQYIYEPWKAPLNVQEAAGCIVGMDYPFPMVDHEIVSQQNLELMREIREQQRQITLLTLGKAPFPINGHH* 0

Cryptochrome 6-4 photolyases

>CRY64_anoCar Anolis carolinensis (lizard) XM_003225714 6-4 photolyase synteny: DCPS TIRAP CRY64 SRPR FOXRED1
0 MAHVSIHWFRKGLRLHDNPALLAAMKNSAEIYPIFILDPWFPKNMQVSINRWRFLIESLKDLDESLKKLNSR 2
1 LFVVRGRPAEVFPELFTKWKVTRLAFEVDTEPYARRDAEVVRLAAEHGVQVIQKVSHTLYDTER 2
1 IIVENSGKAPLTYTRLQTLVASLGPPKQPVPAPKLEDMK 1
2 DCCTPVKEDHDLEYGTPSYEELGQDPKTAGPHLYPGGETEALARLDLHMKRT 0
0 SWVCNFKKPETHPNSLTPSTTVLSPYVKFGCLSVRMFWWKLAEVYQG 0
0 RKHSDPPVSLHGQLLWREFFYTAGAGIPNFDRMENNPVCVQVDWDNNQEYLRAWRE 0
0 GQTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQK 0
0 VFEELLLDADWSLNAANWQWLSASAFFHQFFRVYSPVTFGKKTDKNGEYIK 2
1 KYLPFLRKFSNDYIYEPWKAPRSLQERAGCIIGQDYPKPIVEHEKVYKRNLERMKAAYARRSPNLVIQAKDKVSQKKGV 1
2 NRKRPEAPTKAKVQAKKVKTKSS* 0

>CRY64_chrPic Chrysemys picta (turtle) AHGY01135270 AHGY01135271 no synteny
0 MKHVSIHWFRKGLRLHDNPALLAATTDCRKLYPIFVLDPWFPKNMRVSVNRWRFLVESLRDLDESLQKLNSR 2
1 LFVVRGRPTEIFPVLFKEWKVTRLTFEVDTEPYSRQRDSEVASLAAEHGVQVIQKVSNTLYDTDR 2
1 VIAENNGKVPLTYVRLQTLLATLGPPKRPVPAPTLENLK 1
2 DCCTPCKDNHDAEYGIPTLEELGQDPEQAGLRLYPGGESEALCRLDLHMNRT 0
0 AWVCNFQKPQTEPNSLNPSTTVLSPYIKFGCLSVRTFWWRLAEVYQG 0
0 KKHSNPPVSLHGQLLWREFFYTAGAGIPNFNKMEGNPVCVQVDWDNNPEHLRAWSE 0
0 GRTGYPFIDAIMAQLRTEGWIHHLARHAVACFLTRGDLWISWEQGQK 0
0 VFEELLLDADWSLNAGNWQWLSASAFFHQFFRVYSPIAFGKKTDKSGEYIK 2
1 KYLPFLRKFPAEYIYEPWKAPRSMQEQAGCVIGRDYPKPIVVHEVVSKRNVERMKAAYARRSSSTTAQLEGGGGKKGIN 1
2 GAKRRTPAGPSVAELLTKKPKT* 0

>CRY64_allMis Alligator mississippiensis (alligator) blat
0 MKHSCIHWFRKGLRLHDNPALLAAMKDCSELYPIFILDPWFPKNMQVSVNRWRFLVESLKDLDESLKKLNSR 2
1 LFVVRGHPAEVFPGLFKAWKVTRLTFEVDTEPYSKQRDAEVVRLAAAHGVQVIQKVSHTLYDTDR 2
1 VIAENNGKVPLTYRQLQAVLAGLGPPKQPVLAPTLETLK 1
2 DCCTPGRDNRDPKYEIPTLEELGQDPKEAGPCLYPGGESEALSRLAFHMKRM 0
0 TWVCNFKKPDTEPNTLSPSTTVLSPYVKFGCLSVRTFWWKLAEIYRG 0
0 KKHSSPPVSLHGQLLWREFFYTAGAGIPNFNRMEGNPICVQVDWDDNPEYVKAWKE 0
0 GRTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWVSWEEGQK 0
0 VFEELLLDADWSLNAGNWQWLSASAFFHQFFRVYSPVAFGKKTDKSGAYIK 2
1 KYLPILRKFPAEYIYEPWKAPRSMQEQAGCIIGRDYPKPIVEHEALSKRNIMRMKAAYAQRSHSKAAQVEKESTKKGN 1
2 GGKRKLPAGPSVVELLTKKPKAKSS* 0

>CRY64_croPor Crocodylus porosus (crocodile) blat/genome
0 MKHSCIHWFRKGLRLHDNPALLAAMKDCSDLYPIFILDPWFPKNMQVSVNRWRFLIESLKDLDESLKKLNSR 2
1 LFVVRGHPAEVFPGLFKAWKVTRLTFEVDTEPYSKLRDAEVVRLAAAHGVQVIQKVSHTLYDTDR 2
1 IIAENNGKVPLTYRQLQAVLAGLGSPKQPMLAPTLETLK 1
2 DCCTPARDNHDPKYEIPTLEELGQDPKEAGPRLYPGGESEALSRLDFHMKRM 0
0 TWVCNFKKPDTEPNTLSPSTTVLSPYIKFGCLSVRTFWWKLAEIYRG 0
0 KKHSSPPVSLHGQLLWREFFYTAGAGIPNFNRMEGNPICVQVDWDDNLEYVKAWKE 0
0 GRTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWVSWEEGQ 0
0 VFEELLLDADWSLNAGNWQWLSASAFFHQFFRVYSPVAFGKKTDKSGAYIK 2
1 KYLPILRKFPAEYIYEPWKAPRSMQEQAGCIIGRDYPRPIVEHEAVSKRNIMRMKAAYAQRSRSHSKSAQVEKEGTKKGN 1
2 GGKRKLPAGPSVVELLTKKPKAKSS* 0

>CRY64_xenTro Xenopus tropicalis (frog) synteny: STS1 RPL27A CRY64 FOXRED1 SRPR PubMed:19715341 19345672 9016626
0 MKHNSIHWFRKGLRLHDNPALLAAMKDCAELYPIFILDPWFPRNMKVSVNRWRFLIEALKDLDENLKKINSR 2
1 LFVVRGKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKLAAEHNVQVIQKVSNTLYAIDR 2
1 IIAENNGKPPLTYVRFQTVLALLGPPKRPVQVPTQENMK 1
2 DCCTLWKSSYNEKYGVPTLEELGQDSLKLGPRLYPGGESEALSRLELHMKRT 0
0 TWVCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWRIADIYQG 0
0 KKHSDPPVSLHGQLLWREFFYTAGVGIPNFNKMEGNTVCVQVDWGNNKEHLQAWSE 0
0 GRTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQK 0
0 VFEELLLDADWSLNAGNWQWLSASTFFHQFFRVYSPVAFGKKTDKNGDYIK 2
1 KYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYPKPIVEHDVASKQNIQRMKAAYARRSGSTAEVDKDSGQSNKN 1
2 GAKRKVAGGPSVAELFKKNKSKKD* 0

>CRY64_lepOcu Lepisosteus oculatus (spotted_gar) AHAT01024141
0 MMHRSIHWFRKGLRLHDNPALLASLRDCAELWPVFLLDPWFPKNARVSVNRWRFLLRALQDLDGNLRKLGSR 2
1 LFVVRGSPAEVFPRLFEQWKVTRLTFEVDTEPYARQRDAQVGKIAEEHGVEVIQKVSHTLYDTER 2
1 ILVENNGKAPLTYNRLQALLKTLGAPKRPVPPPTAEDMK 1
2 GVCTPCSERHDEEFGVPTLEELGQDPRTAGPELYPGGETEALSRLDRHMQRT 0
0 AWVCGFQKPNTEPNALSPSTTVLSPYLKFGCLSARTFWWRLTDVYRG 0
0  0
0 GCTGFPFIDAIMTQLRSEGWVHHLARHAVACFLTRGDLWISWQEGQK 0
0 VFEELLLDADWALNAGNWQWLSASAFFHQYYRVYSPIAFGKKTDKNGDYIR 2
1 KYLPVLKKFPSAYIYEPWKAPRSVQEQAGCIVGKDYPRPIVDHDVVSKKNIQRMKLAYARRAQLGGEQEGTGK 1
2* 0

>CRY64_danRer Danio rerio (zebrafish) BC044204 6-4 photolyase aka CRY5 synteny: FOXRED1
0 MSHNTIHWFRKGLRLHDNPALIAALKDCRHIYPLFLLDPWFPKNTRIGINRWRFLIEALKDLDSSLKKLNSR 2
1 LFVVRGSPTEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMKLAKEYGVEVTPKISHTLYNIDR 2
1 IIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAPTNEDMR 1
2 GVSTPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHMERT 0
0 NWVCKFEKPKTSPNSLIPSTTVLSPYVRFGCLSARIFWWRLADVYRG 0
0 KTHSDPPVSLHGQLLWREFFYTTAVGIPNFNKMEGNSACVQVDWDNNPEHLAAWRE 0
0 ARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQK 0
0 VFEELLLDSDWSLNAGNWQWLSASTFFHQYFRVYSPIAFGKKTDKHGDYIK 2
1 KYLPVLKKFSTEYIYEPWKAPRSVQERAGCIVGKDYPRPIVDHEVVHKKNILRMKAAYAKRSPEDKTINK 1
2 GEKRKASPSIKEMFQKKAKR* 0

>CRY64_braFlo Branchiostoma floridae (amphioxus) XM_002595028 fused exons 2-3 BW780666 odd splice phases exon 5-6, no split 8-9, no last exon
0 MANKVQHSTIHWFRKGLRFHDNPSLLHALRTSRHVYPVYVVDQNWMKEHDIRYGANWWRFVIQCLEELDTRLRKYGLRLFVVRGSAEDFFKEHFRKWKVTQLTHDVDTEPFYRIRDVAVRKIASDMGVEVVTHVAHTLYDIDR 2
1 TVERNGGTPPLTYRKFLKVYNEMGKPPKEKETATTEHFA NCTLPPEALQDKKFDMVTLEELGMRCDFPAKFVGGETEALRRLEKSLEDK 0
0 DWVLKFEKPKTSPNSLLPSTTVLSPYITVGCLSARLFYHQLDKIYSK 0
0 AKNHSQPPVSLHGQLIWREFFYTAAAHTPNFNQMEGNRVCLQIPWNKNDEHLTRWRN 1
2 AQTGFPWIDAAMTQLRKEGWIHHLARHAVACFLTRGDLWISWEEGMK 0
0 VFEELLLDADWSLNAGNWMWLSASAFFHQYFRVYSPIVFGKKTDPKGTFIR 2
1 HYLPVLKNFPKEYIYEPWKAPRNVQEKAGCIVGKDYPRPIVDHKEASQRNLDIMRDVRKDQKETAAVTLGYGK* 0

>CRY64_strPur Strongylocentrotus purpuratus (urchin) XM_001189626 extra 1st exon unwarranted MCGAPRSYVEIRDSEEHSRRHVARLQFQFQSDLP 12 K
0 MPHNSTIHWFRKGLRIHDNPALLTAIQGTKVFRPIFILDPHFIESEKVGINRWRFLLETLQDLDYSFRALGTR 2
1 LFVVRGNPTTVFPEIFKKWNVTRLTFEVDTEPYARRRDQEVIELAKKNDVEVITKVSHTLYDTER 2
1 TIKANKYKPPMTYQRMVGLLSEIGAPAIPELPPLMANFT 1
2 GVATPVKPDHDNEYGVPSLEDLGLDLEGLGPRLYPGGETEGLQRMDLHLARK 0
0 SWVCGFEKPKTSPNSLEPSTTVLSPYLKWGCLSPRKFYYAIKEVYAQQ 0
0 TNCTKPPVSLMGQLIWREFFYTVAAGTPNFHQMEENPICIQVPWDENPEFLAAWKE 0
0 GRTGYPYIDAIMTQLRTEGWIHHLARHSAACFLTRGDLWQSWVKGQE 0
0 VFDEWLLDADYSLNAANWMWLSSSAFFHQYYRVYSPVVFGKKTDKTGEYIR 2
1 KYIPALNKLPAEYIYEPWTAPRSVQEAAGCIIGRDYPRPIVDHSIVSKRNIGRMKDARACQPGKKA 1
2 EKRPAEPSKQDNNGKKVRKITSMLKKK* 0

>CRY64_aplCal Aplysia californica (sea_hare) scaffold_427
0 MGKHRAIHWFRKGLRLHDNPALLKACEQATELYPIFVLDPWFASSPQCHVGCNRWRFLLQALQDLDQSLQSLNLR 2
1 LFVIRGQPEVEIEKLCQQWSITKLTYEADTEPYAVQRDAKVEARMEALGVEVIKCVSHTLFDVNL 2
1 TVKNNGGCAPLTYQKFQSVLSKMGTPAKALLSPTLTDLEGIK 1
2 GCKTPVSSSHDQYYGVPTLEELGKSSSDCGPLLFPGGETEALDRMERHLKKI 0
0 NWICNFEKPKTSPNSLSPSTTVLSPYLKFGCLSPRLFYHRLQQVYSGK 0
0 KHSQLQFLSTDNCCGENSFYTVGAVTPNFDRMKGNPGVTQIPWVQRLEHFESLDR 0
0 ARTGYPFIDAVMTQLRLEGWIHHLARHAVACFLTRGDLWVSWEQGMK 0
0 VFEELLLDADWSLNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPNGDYLR 2
1 KYLPVLKKFPAKYIFEPWLAPSSVQQAAGCIVGKDYPRPIVDHDRARQENIKKMAAAYAAAKSSNE 1
2 * 0

>CRY64_vilLie Villosa lienosa JR505030 transcript assembly mollusc
0 MTQRSVHWFRKGLRLHDNPALLAAFENSSHVWPIFILDPWFIKNAQVGVNRWRFLLQSLQDLDNNLKKLNSR 2
1 LFVIRGNPNEVLLELFKEWKVTKLTFEVDTEPYAQQRDGEIEELAKKHNVKVVKCVSHTLYDVQE 2
1 TIEKNGGKPPLTYQRLQTILFKMGPPPKPVKTLDSSVVM 1
2 DNKTTVSEDHDKKYCVPSLADLGKSHEACGPLLFSGGETEGLSRLERMLKKT 0
0 NWICTFEKPKTEPNSLTPSTTVLSPYLKFGCLSVRTFYYRLHEVYSQN 0
0 KKHTQPPVSLHGQLLWREFFYTAGAGTPNFDKMEGNPICVQIPWEKNRGHLEAWAN 0
0 GRTGYPFIDAVMTQLRKEGWIHHLARHAVACFLTRGDLWISWEEGQK 0
0 VFEEHLLDADWSINAGNWMWLSASSFFYQYYRVYSPISFGKKTDKNGDYIR 2
1 KYLPILSKFPEKYIYEPWTAPNDIQVKAGCIIGKDYPPPIVNHDKMRPINIKRMAEAYGKRFDSGKDNTNGGSIKKKI 1
2 SASEDDDEAPKKKKVKKSSNKMTDFLM* 0

>CRY64_droMel Drosophila melanogaster (fruitfly) 6-4 photolyase PDB:3CVW CG2488 uses 5-deazariboflavin
0 MDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDA 
AVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPG 1
2 GETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRT
GYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCV
LGTDYPHRIVKHEVVHKENIKRMGAAYKVNREVRTGKEEESSFEEKSETSTSGKRKVRRATGSAPKRKR* 0

>CRY64_danPle Danaus plexippus (butterfly) EF117813 PubMed:17244599 two novel exons
0 MTKVASVIHWFRLDLRLHDNLALRNAINE 0
0 AENRKQILRPIYVIDPDIKNRVGCNRLRFLFQSLKNLDTSLRKINTRLYVIKGKAIECLPKLFDEWHVKFLTL
QVDIDADLVKQDEVIEEFCEANNIFVVKRMQHTVYDFNSVVKKNNGSIPLTYQKFLSLVSDVQVKDIIQISKGVSDECKASDYDSQGYDIPSLEEFGVNESELSECKYPGGESEGL
KRLDVYMAKKQWVCNFEKPKSSPNSIEPSTTVLSPYISHGCLSAKLFYHKLKQVENGSKHTLPPVSLMGQLMWREFYYTAGSGTENFDKMVGNSVCTQIPWKKNDAHLKAWAEGKT
GYPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKVFEDFLLDYDWSLNAGNWMWLSASAFFYKYYRVYSPVAFGKKTDKDGLYIRKYVPELKKYPSEFIYEPWKAP
KGVQKTAGCIIGEGYPNRIVDHDKVHKDNIQKMNAAYKVNKEKKAMKRPRQ* 0

>CRY64_acyPis Acyrthosiphon pisum (aphid) XM_001945977 single exon
0 MDKNDADVGRETTVHWFRKGMRLHDNPAFKLSCEAKNSNGERYKLRPIYILDPYFRKYIRAGANRWRFLQQSLVDLDTTLRKLGTRLYVIRGLPHEVFPDLF
AKWNVKLLTFELDTEPYARERDNQVEQLARKHGVKVEQKVSHTIYNTELVLRANGGSVPMTYQKFVSVVGSMPTPRRPIPAPDMLPSECLLDDDLNNPEFDVPTLDELLTLKGFNP
AELKPCLYPGGEKEALRRLEEYMKNKTWVCKFEKPNTSPNSLKPSTTVLSPYMKFGCLSASHFYYRLKEVIGNSPHSKPPVSLIGQLYWREFYYTVGASTPNFDKMVGNSICCQVP
WDNNPDALEAWTNGKTGYPFIDAIMRQLRDEGWIHHLARHAVACFLTRGDLWISWEKGLAVFEELLLDADWSMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKSGDYIRKYIPE
LAKYPDQYIYEPWSAPKSIQERAGCVVGVHYPKRVVVHEDVYKNNIAKMSLAYKSTKAGKSSNTKKSRDMSTSPDKKNIKKPKLK* 0

>CRY64_anoGam Anopheles gambiae (mosquito) XM_314748
0 MAKRETIVHWFRKGLRIHDNPALTVAVDKVRANPAKYCLRPIFVLDPGIRKWLRVGPNRWRFLQQTLANLDENLRSINSRL 0
0 YVVRGNPVEVFPKLFADWNVSLLTYEHDIEPYAVKRDSTVEEQARKHWVEVHIEKSHTIFDPEGIVKKNGGKPPLTYQRYATLASACKIPQPLPVPQKLPAKETSPEADKEERKNPSCYDPPTMEELDIEEASMGQC
KFPGGESEALRRMNEILSRKAWVCKFEKPNTSPNSLEPSTTVLSPYLKFGCLSVRLFYSRIAETIKGQKHSQPPVSLIGQVMWREFYYCVAAATPNYDKMVGNGICTQIDWDTNKD
YLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPEGKFIKKYVPELARFPA
GIIYEPWKANLETQKKLGCIIGKDYPMRIVVHEDISKVNIQRMSAAYKRNKAQKDGGTEQDDSVSSGSGGTPGKKRPTSTGSTAKGKAAPKKRKIEANIEKFLKKK* 0

>CRY64_bomMor Bombyx mori (silkworm) AK381942 frameshift
0 MSKTATVIHWFRLDLRIHDNLALRNAINE 0
0 AENRKHLLRPIYFLDPNIKDKVGINRLRFLLQSLEDLDSNLKKLNTCLYVLRGKAVDLLPKLFDDWQVKYLTCQVDIDPEFVQQDEYIEDIAEKKGVFINKRVQHTVYDVHKVLRENN
GAVPLTYQKFLSLVKSINVKEPIEISNVLSSHCKPIDIQSVNYSIPNLKELQIDEETLAPVKYHGGETEALKRLNLYMSKKEWVCKFEKPNSSPNSIEPSTTVLSPYISHGCLSAKLFYH
KLKEVENGRQHTLPPVSLMGQLMWREFYYTAGTGVANFDKMVGNAICIQIPWTKNDAFLKAWAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDY
DWSLNAGNWMWLSASAFFYKYFRVYSPVAFGQKTDKEGVYIKKYVPELKKYPREYIYEPWKAPQSIQRNAGCIIGEHYPKRIVNHDTIHKENIQKMATAYKLNREKKAVKRPRS* 0

>CRY64_craMey Crateromorpha meyeri (sponge) PubMed:20121950
MTYNTLHIFTDDALRINDNNSLLSNLENTKNLYTVFYYGHIKKINHIPPHRVIFLLESLKNLKERLDEYGIPLYFIDEPMFQSLRMLISKWNINRVTTEP
VVSIVGKRDQLSLRNFLSAFGVMLRTYNSSTLYDTVKVPVNITRSEFFRIITQMEPELSLPEELTEFLSKFSSFPDPFINKKIPSLSEFGITNETMSSID
TKFRGGETAAILQLEKLIANRCEPNNLPKVAQLNQYDAISPAIKFGCISVRTIYNRVSKLEPKYNEVKNQIYDGLRNRDYCILVGGNCPNIDNQGSIYTY
ILPWDVKQDASTRFQTGRTGYPFIDAAIAQLKREGFIHNSVKNILVRTLTCDLMWIGWHEGVRMFYKWSLDYNAAICALSWMHGSKSTWLLEEISISQIN
PIEEAKEIDKDGDYIRKYLPELKDYPSEYIHTPWLAPLDQQIESECVIGQDYPYPNYCDVEERVQQCRKRLQIFYNIMPIAKKRRTLSLLKKRTRININNNDSVINIRAQLECKATKLSQ* 0

>CRY64A_triAdh Trichoplax adhaerens (placozoa) XM_002108524
MVCTVVWLRYDLRLIDNPALFHAAKRGHVVIIYILDQETPGKWKLGKASLWWLHHSLKSLQNDLLKFNIPLILRRGADPLTILRQVLLQSRADAVYWNRC
YEPYAVKRDQSIEEALKVDDVTVGSFQAGLLYEPWAVKSAKDEPFKLYIMYWNRCLSSDQPRKPYDKPRFNNTLDIKVQTDTLDSWHLVSAKKDWKDELK
IVIGCPGEDGAIRKLKEFIKYKLVDYRKGKETVWPSKTSQLSTHLHFGEISPFVVWHTAKESVHLRSVPSDSSQKFLTELGWRDFCFHLLHYYPDFPEKS
YKLNFDETIWKVDKEKLKLWQQGKTGYPIVDAGMRELLNTGVISYRVRTIVASFLTKHLLIPWQNGAEWFWDTLVDADLALNSCSWQRITGCGADISSYF
YIINPVTQGERFDSDGNYVRKWIPEIAKLSNDYIQQPWEAPAAVLKKAGIALGKTYPKCIVNHKKARDVALTKFAPLKRQEPMDNLKKLPNKKKMKK* 0

>CRY64B_triAdh Trichoplax adhaerens (placozoa) XM_002107723
MSSSKIPCTLVWLRQDLRLIDNPALFHAAKRGQLITVYIFDEDCSGKRRTGQACLWWLYHSLKSLRNQLSQWNIPLIVKSGKDAFTILKELLDSYNADAI
YWNRCYEPFEYNRDCSIEEKLKMENVTVETYQDRVLFEPWTIKTAKGGPVQIYVHFWNQCLSLPQPRKPYDKPKFKNQTGCQSKCDEPAVWQRLAKLSQD
MPMKLQDFWHPGEEQAISKLKSFIKNSLNAYAEKSQCLRLNTTSNLSPYLHFGEISPFTVWHSVRHASSSAEPPAVKSESLKQYLRSLGWREYTCHLLFH
YPDLPQKCFRSSFEQLKLQVDPVKLQSWQQGNTGYPVVDAGMRQLSVAGIMPNRLRMIVASFLIKHLLVPWQKGEEWFWSKLIDADLAQNAFNWQWAAGS
GPNACPYFRVFNPITQGEKFDADGYYVRKWIPELAALPNAYIHKPWEAPSTVLKKANIVLGKTYPRPIVQHKAARELALATFGQTKRKQEPPTSNSNKRVKEE* 0

DASH cryptochrome CRY3 sequences

>DASH_taeGut Taeniopygia guttata (finch) ABQF01044665 ABQF01044669 ABQF01044671 synteny: ACAA1 DASH MYD66 OXSR1
0 MSGTAGTAICLLRCDLRAHDNQ 0
0 QVLHWAQHNADFVIPLYCFDPRHYLGTHCYRLPKTGPHRLRFLLESVKDLRETLKKKGS 2
1 TLVVRKGKPEDVVCDLITQLGSVTAVVFHEE 0
0 ATQEELDVEKGLCQVCRQHGVKIQTFWGSTLYHRDDLPFRPIDR 2
1 LPDVYTHFPKGLESGAKVRPTLRMADQLKPLAPGLEEGSIPTMEDFGQK 1
2 DPVADPRTAFPCSGGETQALMRLQYYFWDT 0
0 NLVASYKETRNGLVGMDYSTKFAPW 2
1 LALGCISPRYIYEQIQKYERERTANESTYW 2
1 VLFELLWRDYFRFVALKYGRRIFSLR 1
2 GLQSKDIPWKKDLQLFSCWQ 0
0 EGKTGVPFVDANMRELSATGFMSNRGRQNVASFLTKDLGLDWRMGAEWFEYLL 0
0 VDYDVCSNYGNWLYSAGIGNDPRDNRKFNMIKQGLDYDGN 0
0 GDYVRLWVPELQGIKGADIHTPWALSSAALSQAGVTLGETYPQPVVTAPEWSRHIHRRP 0
0 GGSPHPRGRRGPAQRKDRGIDFYFSRKKDAC* 0

>DASH_anaPla Anas platyrhynchos (duck) scaffold1769
0  0
0 QVLHWAASNADYLIPLYCFDPRHYAGTHCYGFPKTGPHRLRFLLESVKDLRETLKKKGS 2
1 TLVVRKGKPEDVVRDLITQLGCVGVVAFHEE 0
0 ATQEELDVEKELCQVCEQHGVKVQPFWAATLYHRDDLPFGPIAR 2
1 LPDVYTQFRKAVEAEAKVRPALQLPDQLKPLAPGVEEGCIPTMEDLGQK 1
2 DPGTDPRTAFPCCGGETQALARLQYYFWDT 0
0 NLVASYKETRNGLIGMDYSTKFAPW 2
1 LALGCISPRYIYEQLRKYEKERGANDSTYW 2
1 VLFELLWRDYFRFVALKHGRRIFSVR 1
2 GLQSKEVPWKKDLQLFDCWK 0
0 EGKTGVPFVDANMRELAATGFMSNRGRQNVASFLTKDLGLDWRMGAEWFEHLL 0
0 VDYDVCSNYGNWLYSAGVGNDPRDKRKFNVIKQGLDYDGN 0
0 GDFVRLWLPELQGIAGADAHAPWALSSTALRQAGIILGQTYPQPLVRAPEWSRHINQRL 0
0 GRSPHPRGRRGPADAPAQRKDRGIDFYFSRKKDE* 0

>DASH_melUnd Melopsittacus undulatus (budgerigar) AGAI01061648
0 msgtSARTAICLLRCDLRAHDNQ 0
0 QVLHWAQSNAEFVVPLYCFDPRHYLRTHWYGFPKTGPYRLRFLLESVKDLRETLKKKGS 2
1 TLVVRKGKPEDVVRDLITQLGSVSAVVFHEE 0
0 ATQEELDVENELCQVCSQHGVKVYTFWASTLYHRDDLPFRPIAR 2
1 LPDVYTHFRKAVESEAKVRPTLRMADQLQPLAPGVEEGCIPTMEDFGQK 1
2 DPDTDPRTAFPGSGGETQALMRLQYIYFWDT 0
0 NLVASYKEVRNGLVGMDYSTKFAPW 2
1 LALGCISPRYIYEQIKKYERERTANQSTYW 2
1 VLFELLWRDYFRFVALKYGRRIFSLR 1
2 GLQSKEVPWKKDLQLFNCWK 0
0 EGKTGVPFVDANMRELAATGFMSNRGRQNVASFLTKDLGLDWRMGAEWFEYLL 0
0 VDYDVCSNYGNWLYSAGVGNDPRDNRKFNMVKQGLDYDGN 0
0 GDYVRLWVPELQGIKGADIHTPWALSSAALSQAGVTLGETYPQPIVTAVEWSRHISQRP 0
0 GRSLHPRGSRRPAHSPVQHKDRGIDFYFSRKKDA* 0

>DASH_galGal Gallus gallus (chicken) syntentic pseudogene, numerous indels, frameshifts, internal stops
0  0
0  2
1 MVVRKGKLEDMVHDVITSLGCVGVVAFHEE 0
0  2
1 IQPDVYTNF*KAVESEVKTWPALQRADQLKPLAGG&^EEGCIPTTEDLGQK 1
2 DPGTDPQTAF-LGFNETAAL          0
0 LLFASYNETWSGLIGVD*STKFAPW 2
1 LVLGCLSP*YIFSQIGKYVKERAANHST*W 2
1 AVFELLWWDCF*FVALKYGRRILSLK 1
2  0
0                                    LGLDWRMGAEWFEYLL 0
0 VDYNVFSN*STWLYSAGIGNHPKDNRKFNVIKQGPDYDGN 0
0 GDCIQLRVTELQGMKEADIHSPWALNSATLSQVGVTLGKTYPQVQSDSP^EWSRQIRQRA 0
0 GRSPHPKGRRGPAHSPLQHKERGTDCFSLKK* 0

>DASH_melGal Meleagris gallopavo (turkey) ADDD01036185 syntenic pseudogene
0  0
0  2
1  0
0  2
1  DVYTNL*KAVESEVKVWPALQRADQLKPLA-GSGRKMYPYNKGFG   1
2  0
0  LFASYKEIWSGLTGADNSTKFAPW 2
1 LVLDCLSP*CIFSQVQKYIKERAANQSTFW 2
1 VFELLWWDCF*FVPLKYGRRIFSL 1
2  0
0 LKVDYNVPNN*VT*LYSADIGNHPKENRKFNMIKEGPNDDG 0
0 VPELQGIKGPDIHSPWALNSASVFQVGGTLVETYPQPAV 0
0* 0

>DASH_anoCar Anolis carolinensis (lizard) XM_003221869 14 exons
0 MASSLPRTALCLLRNDLRCHDNE 0
0 VLHWAQSHADRIVPLYCFDPRHYAQTYHYNFPKTGPFRLRFLLESVKDLRETLKKKGS 2
1 NLVVRKGKPEDVVRDLIIQLGSVASVSFHEE 0
0 ATKEELDVEKALIRVCTEHGVEVQTFWGSTLYHRQDLPFKHISQ 2
1 LPDVYTQFRKAVESQARVRPVLKMEGQMKSLPPEIEEGNIPSLEDFGMT 1
2 EPLRDPRSAFLCSGGETQALMRLQHYFWET 0
0 NLVASYKETRNGLIGLDYSTKFAPW 2
1 LALGCISPRYIYDQIQKYEKERTANQSTYW 2
1 VLFELAWRDYFRFVALKYGRKIFFPR 1
2 GLQDKDISWKKDPKLFDAWK 0
0 EGRTGVPFVDANMRELATTGFMSNRGRQNVASFLTKDLGLDWRMGAEWFESLL 0
0 VDYDVCSNYGNWLYSAGIGNDPRENRKFNMIKQALDYDGN 0
0 GDYARLWVPELQCIRGGDVHTPWALSNGALSQAGVSLGSSYPVPIIKAPEWGRHINQKPVSM 0
0 SNQGPKGRKGPSHTPKQHKNRGVDFYFSHKKDLS* 0

>DASH_chrPic Chrysemys picta (turtle) AHGY01416294 first exon off contig
0  0
0 VLRWAQNNADYVIPLYCFDPRQYLRTYYYGFPKTGPHRLKFLLESVKDLRQTLKKKGS 2
1 NLVVRKGNPEDVVHDLITQLGSVTAVAFHEE 0
0 ATKEELDVEKALQRVCVQHGVKIQTFWASTLYHRDDLPFRHISR 2
1 LPDVYTQFRKAVEAQAKVRPTVQMPDQLKPLAPGVEDGCIPVPEEFGQK 1
2 DPLTDPRTAFPCCGGETQALMRLQHYFWDT 0
0 NLVASYKETRNGLIGIDYSTKFAPW 2
1 LALGCISPRYIYEQIRKYEKERTANQSTYW 2
1 VIFELLWRDYFRFVALKYGTRIFLLK 1
2 GLQDKEVPWKKDPKLFDAWK 0
0 EGRTGVPFVDANMRELAATGFMSNRGRQNVASFLTKDLGLDWRMGAEWFEYLL 0
0 VDYDVCSNYGNWLYSAGIGNDPRENRKFNMIKQGLDYDSN 0
0 GDYVRLWVPEIQCVKGGEIHTLWALSNAALSQAGIALGETYPLPVVLAREWSRHINQKP 0
0 RDHPPRGRKDPSDTPRQHKDRGMDFYFSRNKDLS* 0

>DASH_xenTro Xenopus tropicalis (frog) XM_002938001 PubMed:15147276 synteny: ACAA1 DASH MYD66 transcripts AL790297 CR419606 etc
0 MAARARVIICLLRNDLRLHDNE 0
0 VLHWAHRNADQIVPLYCFDPRHYGGTHYFNFPKTGPHRLKFLLESVQDLRNTLKERGS 2
1 NLLLRRGKPEEIIAGLVKQLGNVSAVTLHEE 0
0 ATKEETDVESAVRRVCTQLGVRYQTFWGSTLYHREDLPFRHISS 2
1 LPDVYTQFRKAAETQGKVRSTFQMPDRLKPLPSGLEEGSVPTHQDFDQQ 1
2 DPLTDPRSAFPCCGGETQALQRLHHYFWET 0
0 NLVASYKDTRNGLIGIDYSTKFAPW 2
1 LALGCISPRYIYEQIRKYEKERTANQSTYW 2
1 VIFELLWRDYFRFVALKYGRRIFFLR 1
2 GLQDKDVPWKKDPKLFDAWK 0
0 EGRTGVPFVDANMRELAMTGFMSNRGRQNVASFLTKDLXIDWRLGAEWFEYLL 0
0 VDYDVCSNYGNWLYSAGIGNDPRENRKFNMIKQGLDYDAG 0
0 GDYIRLWVPELQQIKGGDAHTPWALSTASLAHSNVSLGETYPYPIVMAPEWSRHINQKPSGS 0
0 WETSARRGKGPSHTPKQHRNRGIDFYFSRNKNV* 0

>DASH_hymCut Hymenochirus curtipes (frog) fragment
1  QMPKLKPLPDGLEEGKVPTYEEFDQE 1
2 DPLTDPRTAFPCSGGETQALQRLHHYFWDT 0
0 NLVPPYKDTRNGLIGLDYSTKLAPW 2
1 LALGCVSPRFIYEQIKKYEQERTANQSTYW 0
0 VIFELLWRDYFRFVALKYGRRIFFLR 1
2 GLAHTNV* 0

>DASH_ambMex Ambystoma mexicanum (axolotl) CO785483 fragment
0 MSVQARTIICLLRNDLRFHDNE 0
0 VLLWALKNAERIVPLYCFDPRHYVGTHNYNFPKTGPHRLKFLLESVKDLRETLKKKGS 2
1 NLLVRKGKPEDVIQELLKQLGSVSAVAFHNE 0
0 VTKEELDVEAAVKQVCvqhgGKIQTFWGSTLYHRDDLPFRHISR 2
1 LPDVYTQFRKGVESQGTSAATLQMPQKVPPLPSGLE* 0

>DASH_latCha Latimeria chalumnae (coelocanth) AFYH01055296 AFYH01281932 probable pseudogene
0  0
0  2
1  0
0  2
1  1
2  0
0  2
1  2
1 VIFELLWRDYFRSVALKYGRRIFLLE 1
2 GLQEKEIPWNKRPELFDVWK 0
0 ynerGVPFVDANMRKLTLTGFISN---QNVASFLTKDLGLDWRMGAEWFEYLL 0
0 IVHDVCSNYGNWLYSAGIGNDTRENRKFNVVKEGLD*DSN 0
0  0
0  * 0

>DASH_lepOcu Lepisosteus oculatus (spotted_gar) AHAT01010414
0 MSTIRTIICLLRNDLRFHDNE 0
0 vfhHWAQGNAEQIVPLYCFDPRHYLGTHCYNFPKTGPFRLRFLLESVKDLRDTLKKNGS 2
1 NLLVKRGKPENVVSDLIKQLGSVTAVAFHEE 0
0 VTKEEQDVETEVTRVCAQFKVRVHTCWGSTLYHREDLPFNHIAR 2
1 LPDVYTQFRKAVETQSQVRPTIRMPEQLKPFPHNLEEGPIPTPEDLGQP 1
2 DAVSDPRTAFPCIGGETQALARLKHYFWDT 0
0 NLVASYKETRNGLIGMDYSTKFAPW 2
1 LALGCISPRYIYEQIKQYEKERTANQSTYW 2
1 VIFELLWRDYFRFVAVKYGNRIFTVK 1
2 GLQQKSVSWKKDVKLFDAWK 0
0 EGKTGVPFVDANMRELALTGFMSNRGRQNVASFLTKDLGIDWRMGAEWFEFLL 0
0 VDYDVCSNYGNWLYSAGIGNDPRENRKFNMIKQGLDYDNN 0
0 GDYVRLWVPELRGLKGGDVHAPWVLSSASLADAEVSLNQTYPVPMVVAPEWSRHTTSKA 0
0 SGGGLSQKGKRGPSHTPKQHRDRGIDFYFSRNNKKLQ* 0

>DASH_danRer Danio rerio (zebrafish) NM_205686
0 MSASRTVICLLRNDLRLHDNE 0
0 VFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGS 2
1 TLLVRQGKPEDVVCELIKQLGSVSTVAFHEE 0
0 VASEEKSVEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGG 2
1 LPDVYTQFRKAVEAQGRVRPVLSTPEQVKSPPSGLEEGPIPTFDSLGQT 1
2 EPLDDCRSAFPCRGGETEALARLKHYFWDT 0
0 NAVATYKETRNGMIGVDFSTKFSPW 2
1 LALGCISPRYIYEQIKKYEVERTANQSTYW 2
1 VIFELLWRDYFKFVALKYGNRIFYMN 1
2 GLQDKHVPWKTDMKMFDAWK 0
0 EGRTGVPFVDANMRELALTGFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLL 0
0 VDHDVCSNYGNWLYSAGIGNDPRENRKFNMIKQGLDYDNN 0
0 GDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPIITAPEWSRHVNNKS 0
0 SGPSSSKGRKGSSYTARQHKDRGIDFYFSKNKHF* 0

>DASH_oreNil Oreochromis niloticus (tilapa) XM_003439198
0 MSSSRTVICLLRNDLRLHDNE 0
0 LFHWAQRNAEHIVPLYCFDPTHYVGTYNYSLPKTGPFRLRFLLEGIRDLRNTLINKGS 2
1 NLVVRRGKPEEVVADLIRQLGSVSSVAFHEE 0
0 VTSEELNVEKRVKDVCAQMKVKVHTCWGSTLYHRDDLPFPHMSR 2
1 LPDVYTQFRKAVESEGRVRPVFSTPEKLNPLPPGLEEGAIPTAEDLQQT 1
2 EPVTDPRSAFPCGGGESQALARLKHYFWDT 0
0 DAVATYKETRNGLIGVDYSTKFSPW 2
1 LAMGCISPRYIYHQIKQYEKERTANQSTYW 2
1 VIFELLWRDYFRFVSVKYGNRIFQVK 1
2 GLQDKSVPWKKDMKLFDAWK 0
0 EGRTGVPFVDANMRELAATGFMSNRGRQNVASFLTKDLGLDWRMGAEWFESLL 0
0 IDHDVCSNYGNWLYSAGIGNDPRENRKFNMIKQGLDYDNN 0
0 GDYVRGWVPELQNIRGGDVHTPWALSTAVLAHAHVTLGDTYPAPIVTAPEWSRHVNKKAGGT 0
0 GPSPRGKKGPSHTPKQHRDRGIDFYFSRSKNL* 0

>DASH_patPec Patiria pectinifera (starfish) HP101597
0 MAGRMKIIICLLRNDLRYRDNE 0
0 VLHWAHQNADILPLYCLDPRHYHGTWHFSFPKTGPHRLKFLLESLRDLKETLRQVGS 2
1 NLVISRGKPETVIQDLIRQLGQDNVKAVALQQE 0
0 ATREELDVEAAIEKSCQVPVHKFWGSTLYHKDDIPFRIRD 2
1 LPNVFTEFRKKTENQSDVRPTLPMPSKLKPLPPGIDPGHAPSVEEMGMK 1
2 DPASDERTAFPYSGGEKQALARIQHYFWDY 0
0 DYVSSYKETRNGLIGGDYSTKFSSW 2
1 LALGCLSPRKIYEEIRKYEKERRANQSTYW 2
1 VVFELLWRDYFKFVALKFGDRLFYLS 1
2 GLLGNHREWRENKALFDAWR 0
0 EGRTGVPFVDANMRELAATGFMSNRGRQNVASFLTKDLKLDWRLGAEWFEHLL 0
0 IDHDVCSNYGNWLYCAGVGNDPRQDRKFNMIKQGLDYDAQ 0
0 GDYVRLWVPELQGIKGGAVHTPWILSSSMLIQANVRLGHTYPLPVVKAPEWNKHMRP 0
0 QERGKSGKGPGQRQQTRGIDFYFSSGKQGKFKK* 0

>DASH_strPur Strongylocentrotus purpuratus (urchin)
0 MAGRMKIIICLLRNDLRYRDNE 0
0 VLFWAHKNATNVIPLYCFDPRHYKGTHQFGFPKTGPHRLKFLLESVRDLRTTLQSVGS 2
1 GLVVRSGNPEDVVPQLIQQFGEGEVAAVALQEE 0
0 ATREELDVEAGLHQSCSKLGVNVKKFWGSTLYHREDVPFSPG 2
1 VPNVYTEFRKKVENRSHVRPPINMPKPLKGLPEGVEEGDIPVFSSFGLK 1
2 DPGSDSRTAFPFQGGETTGLARIEDYFWKS 0
0 DCIAKYKETRNGLIGSEYSTKFAAW 2
1 LAHGCVSPRQIHAEVKRYEKERTENQSTYW 2
1 VIFELIWRDYFKFVALKFGDKMFYLS 1
2 GLLGVHKPWNKNKQWFDAWC 0
0 KGQTGVPFVDANIREMAATGFMSNRGRQNVASFLTKDLVLDWRLGAEWFEQML 0
0 VDHDVTSNYGNWLYSAGVGNDPRQDRKFNMIKQGLDYDPN 0
0 GDYIRLWVPELSGIKGGSIHMPWTLSSAQLNQAGVSLGETYPSPIVTAPEWSRHSKRP 0
0 qsgrggaggsqgggsqgGGRNQSGKGQRRNQGPPRGQQRGLDFYFSNPSQK* 0

>DASH_aplCal Aplysia californica (sea_hare) scaffold_151:75,790-145,485
0 MSSFSSSPVNTVIYLFRNDLRVHDNE 0
0 ALLLANQKGTRLLPLYCFEPRHYSGTYHFGFPKTGNHRLSFLLDSVKDLQKNLKSRGS 2
1 DLVIRKGKPEEVIPDLLRTLNVTRDAAVVFQKE 0
0 VMEEEVKVEKAIEAHVNVPVNTTWGHTLYHVEDLPFQPI 2
1 LPDVYTQFRKKVEDNTTIRKCVHVPDALKPLPEGIEVGSLPSYEDLGVS 1
2 EPEKDSRAAFPFLGGETTALERLHSYLWGT DNVSTYKETRNGMIGSDYSTKFSPW 2
1 LAHGCLSPRKIYWEIKKYEKERTSNQSTYW VIFELIWRDYFRFVGLKYGNKLFHSG 1
2 GIKGDRVEWKVNKEQFKAWQ 0
0 GRTGVPYVDANMRELMATGFMSNRGRQ 0
0 NVASFLTKDLHLDWRLGAEWFESMLVSYSL 0
0 IDHDVCSNYGNWLYSAGIGNDPRENRKFNVVKQGLDYDAE 0
0 GDYVRLWVPELAGIKTGSVHCVWTLSPAVLESGDVSLGQTYPLPLVKAPEWSRHVNRP 0
0 GSSGGGRDKGPGSARGRGQNKGSHRGQGHQSQQAGQKRGLDFYFSSSKPH* 0

>DASH_vilLie Villosa lienosa (mussel) JR504188 transcript assembly mollusc
0 MSKTLTVICLLRNDLRIHDNE 0
0 VLYWANKYADYVLPVYCFDPRHFKGTHHFNFPKTGPHRLRFLLESIKDLRKNLQSCGS 2
1 GLVVKQGEPEVVILDLIQKLGKDKVHALAYQTE 0
0 ATKEELDVEETLRAKCGVKIQTFWGHTLFHRDDLPFGVGQ 2
1 LPDVYTQFRKQVEGECVVRDTIDMPRTFKPLPPGIVLDEIPTAEALGVK 1
2 EAVSDPRSVFPWSGGETSALERLNQYLWNT DKVATYKETRNGMIGADYSTKFSSW 2
1 LALGCLSPRVIYWEIKRYEKERASNQSTYW VVFELLWRDYFRFVALKYGNRIFYLS 1
2 GIQGKYIEWKQDTKLFDAWRD 0
0 GKTGVPYVDANMRELATTGFMSNRGRQ 0
0 NVASFLTKDLKLDWRLGAEWFESML 0
0 IDHDVCSNYGNWLYSAGIGNDPREDRKFNMVKQGLDYDPN 0
0 GDYVRLWIPELAGVKDGSIHTVWTLNSGALSRAGVSLGKTYPHPILIAPEWNRHMGRT 0
0 KPGMGRGTGSQPNKLKGIDFYFSSGTQRQ* 0

>DASH_nemVec Nematostella vectensis (sea_anemone) XP_001623243 ABAV01026885
0 MATSKTQKTVICLLRNDLRYHDNEALLWAHKNADFVLPLYCFDPDHYKTTWRFSLPKTAQYRAKFLLESVTDLRSTLQIHGSNLIIRQCQPLEAVTKLTE
LLKPVAPVTSIVFQQEVTYEELNVEKALVEFCKKSGIHMHTIWGSTLFHKDDIPYKAKTVPDTYTQFRKGVENQSTVRNLIDMPKNLKPLPPVKGELGTI
PDLKSLLNDSEIKEVDQRSAFPFMGGEQEALSRLGSYLWGTDSVAKYKETRNGLLGENYSTKLSPWLANGSLSPRMVYHRIKQYEEERVANHSTYWVLFE
LIWRDYFKFVCLKYGDRVFYRSGIMGKSLPWKHDKMTFKLWCEGKTGVPFVDANMRELKETGWMSNRGRQNVASFLIK 0
0 DLGLDWRYGAEWFESLLLDHDVCSNYGNWNYAAGIGNDPREGRKFNMVKQGLDYDPDGDYIKTWVPELAKIPGAKVHVPWTLKPGELR 2
1 SSGVELGVTYPNPIVIAPEWARHTSKTISGKKPSNFNPRQKGVDFYFKSANNGPSGSR* 0

>DASH_hydMag Hydra magnipapillata (cnidarian) XM_002166508 single exon ABRM01055505
MAGFSSRKTIIYWIRNDLRLHDNECLNFACRDGSHVLPLYCFDPDHYKLTHHFGFLKTGIHRAKLILDAVSGLRNSLQKKGSNLVISKHRPKEAIEKLIL
ECEQTAPVTSIVFQKEITKEETDVEASVFKVCDSKGIKVLSFWGSTLYHIEDIPFQINQIPNTYTLFRKGVEKCPVRKLNPIPDKISSLPNLKNFPLGEV
PLLNELGFDKNEYEIDVRSVFPFNGSEVDAIKRLNEYLWGNNAILTYKETRNGLLGKDYSTKFSPWLALGSLSPRMIYHKIKDFEEQKKIKENDSTYWVV
FELIWRDYFKFICSKHGNKVFFKGGLKGGKGPWTWKQDLNLFMKWANGDTGIPFVDANMKELLATGWMSNRGRQNVASFLVKDLNLDWRMGAEWFESLLI
DSDVCSNYGNWNYIAGIGNDPRSNRKFNVIKQAADYDEEGDYVRTWLPVLKKLGICHTPWRLSASELNAGGVDLGKNYPHPIIVAPEWAKHALKMNSKNC
FHEHRGKQNGQKRSIDFYFKSGKTGE* 0

>DASH_monBre Monosiga brevicollis (choanoflagellate) XP_001745157 ABFJ01000402
0 MAKAGNPRPVVVWFRNDLRVHDNEVLLQAAK 0
0 ASHNHVVPVYCFDIRQ 1
2 YSLVITHRSRRCGQFPKCGRPRARFLIESVDDLRTRLQELGSGLVVRTGLPEEEVARVAAQVGATQVFAHQEVCSEEVAAEHRLKRQLEVPLSLHWGAVTLCHLDDLDFGPRCKHLPSVFTQFRKRVEADMHVRPVVAAPARLAPLPSDLELGSIPTVEDLCPGQH 0
0 EPDERAVLPFKGGETAARARLQYYLWESNLLAS 2
1 YKDTRNGLVGGDYSSKFSPWLAHGNLTARWIYHE 0
0 VKRYEQERTENTSTYWLIFELLWRDYFRFVALQHGTAIFKP 1
2 GGVQHKDVPWRHSPADFEAWQNGQTGFPFIDANMRELAKTGFMSNRGRQNVASFLTK 0
0 DLQIDWRLGAEWFETLLLDHDPCSNY 1
2 GNWNYAAGVGNDPRQGRHFNVIKQ 1
2 AKTYDPTAEYVHLWVPELRGLDAPQAHVPFK 0
0 LSSEELAQANIQLGSTYPRPVVDRLDGGRLPLKVRDETAYGPHVQLPQQGLIKMILFDTLFTGLSW* 0

>DASH1_araTha Arabidopsis thaliana (cress) PHR2 NM_130327 AFNA01010806
0 MDSSNVEENLNPETKSAEEQNPLAIFHSSLPIASLSLTLFPSSTQFLKLFAHHPNKVKIPTQASSLTHLSLSSVSPFPSSRISFKSTIAANPLQSPLSIV
PRRPVDPSSAAALRRAAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAV
LVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSRGDVELG
DIPSLLDLGISPTPRTSQ 0
0 EGKPTMVGGETEALTRLKSFAADCQARLSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPR 2
1 NGPGDTGLNWLMYELLWRDFFR 2
1 FITKKYSSAKTQVEAGPATACTGAFA* 0

>DASH2_araTha Arabidopsis thaliana (cress) NM_122394 AFMZ01019177 aka:CRY3 PDB:2VTB
0 MNDHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTG 1
2 ALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGART 0
0 VFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRK 0
0 SVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQE 0
0 VTRGMRFVGGESAGVGRVFEYFWKK 0
0 DLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEE 0
0 VQRYEKERVANNSTYW 2
1 VLFELIWRDYFRFLSIKCGNSLFHL 1
2 GGPRNVQGKWSQDQKLFESWRDAKTG 2
1 YPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGA 1
2 GVGNDPREDRYFSIPKQ 0
0 AQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMYMDTVVPLKHGNGPMAGGSKSGGGFRGSHSGRRSRHNGP* 0

>DASH_phaTri Phaeodactylum tricornutum (diatom) XM_002178853 CPF2
MSSSRSKQSFWFLIFVHTVLILTFAAGAATAMRGASVSTVTKATSRASSQVVLHWFRHGDLRLLDNPALIHSSKTAESCVPVFCFDDSVYGNDNRTPDTRAP
HSNDRGQLKCGPRRAQFVLDSVQDLRRSLQSRGSALYVAHGKPAQVFQRLVDAWPAVPAADTAAPNGSLLTIVCQREVVREENDAVRAVQSVLRRRFPQAKVQQIWGSTMYELDDL
PFATDLANMPDTFTPFRNKVEKNCQIGTPLPVPKQLSLPENFPSALKQGLEYLPTLKELGYTDAQIQQVETHDERGVLHFMVAKQPDSHDCLKDYFETRNGMLGPNYSTKFSPWLA
HGNVSPRYVAAQCRKYEEERVENKSTYWVVFELLWRDFCKFFATKHGDAIFYPYGTTERTDRHKPWSTFGRNLQAWQEGRTGYPLVDANMRELVATGFMSNRGRQNVASFLAINLN
HDWRCGGDFFESHLLDYDVYSNWVNWCAAAGMTGGRLNRFNISKQSKDYDQHGDYVRHWLPELAKVPNEFVHEPWKMTSFQQMEYECKLGVDYPNPIVPPSRPNPHTDRNNRGRGG
HQSKGNNRHGPPDKSRKANASGSNRHQKYEMKSLQPGSFRVKES* 0

>DASH_thaPse Thalassiosira pseudonana (diatom) XM_002291289
MASSATQYKLNIHLFRQTDLRLHDNPALCHTVDLSLGTSSSDAASTAPTGILPVFVFDTTRIYGSNAKSRLGNNLKCGPRRARFAIEAVADLRSNLEKRGSG
LVVAVGSPESILARIATAAVESSGDKGALINVVCQEEVCSEELSVDKAIRSSLAKTMKSTSKFTFETVWGSTMYDPETLPFDGGVFGVPDIFSPFRKDVEAKCQIVNDANNKCSLK
YMPTLSDLGYNAEDIESVSSVDSRTALPVNYRGGETFALRRVKDYIWDKDLLKLYFDTRNGMIGSDYSTKFAPWLALGNVSPRYIARECSRYEEQRVQNKSTYWVVLELLIRDHFK
FFAKKHGDKVFYLTGNIGKQRGSERKWGMDRKKIQAWQDGMTGFPLVDANMRELAATGFMSNRGRQNVASFLTIDLNIDWRYGGEYFEETLLDYDVHSNWGNWCSAAGMTGGRLNR
FNIVKQSKDYDFGGEYVRLWCPELKNVPDKHIHSPWEMSGEMMEECGVKIGHGGDYPSPIVDPGAGPKAVANSNSRGGGRGDQGKYNINTNKGRGQRQDMKSLKTGSYRFAASESESKYYE* 0

Cryptochrome CPD photolyases

>CPD_monDom Monodelphis domestica (opossum) NP_001028149:wrong OPC1 PubMed:7937136 synteny: TNK1 MUC4 CPD KIAA0226 FYTTD1
0 MAPKKRSLGDGDEQEKTETQENKTKRKPLQKHQFSKSNVVQKEEENKREGEKKGGAEGLQEVVMQSRLQTASSVLEFRFNKQRVRLISQDCHLQDHSQAFVYWMSRDQRVQ 1
2 DNWAFLYAQRLALKQKLPLHVCFCLAPCFLGATIRHYDFMLRGLEEVAE 0
0 ECEKLHIPFHLLLGLPKDVLPAFVQAHSIGGIVTDFSPLLHHTQWVKDVQDGLPKQVPFVQ 0
0 VDAHNIVPCWIASDKQEYGARTIRHKIHDRLPHFLTEFPPVICHPYPSNIQAE 0
0 PVDWNACRAGLQVDRSVKEVSWAKPGTASGLTMLQSFISQRLPYFGSDRNNPNKDALSNLSPWFHF 1
2 GQVSVQRAILEVQKHRSRYPDSVANFVEEAVVRRELADNFCFYNKNYDKLE 1
2 GAYDWAQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAAQ 0
0 MQMVQEGKMHGFLRMYWAKKILEWTRSPEEALEFAIYLNDRFQLDGRDPNGYV 1
2 GCMWSICGIHDQGWAEREIFGKIRYMNYAGCKRKFDVAEFERKYSPAD* 0

>CPD_sarHar Sarcophilus harrisii (tasmanian_devil) AEFK01107967
0 MAPKKRSHGTGSEPEKTDSQESKAKRKPLQKHPSSKNNVVQPEREDKKEGQKRAGAEGLQEAVRQARLRTAPSVLEFRFNKQRVRLISQDCHLQDHSQAFVYWMARDQRVQ 1
2 DNWAFLYAQRLALKQKLPLHVCFCLAPCFLGATLRHYDFMLRGLEEVAE 0
0 ECEKLCIPFHLLLGLPKDVLPPFVQKHSIGGIVTDFSPLVHHTQWVKDVQDALPRQVPFVQ 0
0 VDAHNIVPCWVASDKQEYGARTIRHKIHDRLPHFLTEFPPIICHPYPSSIQAE 0
0 PVDWNACRAGLQVDRSVKEVSWAKPGTAFGLTMLQSFIAERLPYFGSDRNNPNKDVLSNLSPWFHF 1
2 GQVSVQRAILEVQKHRGRYPDSVANFVEEAVVRRELADNFCFYNKNYDKLE 1
2 GAYDWAQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAAQ 0
0 MQMVKEGKMHGFLRMYWAKKILEWTHSPEEALEFAIYLNDRFQLDGRDPNGYV 1
2 GCMWSICGIHDQGWAEREIFGKIRYMNYAGCKRKFDVAEFERKYSPVD* 0

>CPD_potTri Potorous tridactylus (rat_kangaroo) D26020 PubMed:7813451
0 MDSKKRSHSTGGEAENMESQESKAKRKPLQKHQFSKSNVVQKEEKDKTEGEEKGAEGLQEVVRQSRLRTAPSVLEFRFNKQRVRLISQDCHLQDQSQAFVYWMSRDQRVQ 1
2 DNWAFLYAQRLALKQKLPLHVCFCLAPCFLGATIRHYDFMLRGLEEVAE 0
0 ECEKLCIPFHLLLGLPKDVLPAFVQTHGIGGIVTDFSPLLHHTQWVKDVQDALPRQVPFVQ 0
0 VDAHNIVPCWVASDKQEYGARTIRHKIHDRLPHFLTEFPPVICHPYTSNVQAE 0
0 PVDWNGCRAGLQVDRSVKEVSWAKPGTASGLTMLQSFIAERLPYFGSDRNNPNKDALSNLSPWFHF 1
2 GQVSVQRAILEVQKHRSRYPDSVTNFVEEAVVRRELADNFCFYNKNYDKLE 1
2 GAYDWAQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAAQ 0
0 MQTVKEGKMHGFLRMYWAKKILEWTRSPEEALEFAIYLNDRFQLDGWDPNGYV 1
2 GCMWSICGIHDQGWAEREIFGKIRYMNYAGCKRKFDVAEFERKISPAD* 0

>CPD_ornAna Ornithorhynchus anatinus (platypus) 
0  1
2  0
0 ECEKLCIPFHLLLGLPKDVLPAFVQTHGIGGIVTDFSPLLHHTQWVKDVQDALPRQVPFVQ 0
0 VADNWAFLYAQRLALQRKLPLHVCFCLVPSFLGATIRHFGFMLGGLKEVAK 0
0  1
2 GQVSVQRAILEVRKQRHRYPDSVASFVEEAMVRRELADNFCFYNENYDKVE 1
2                                  DTLWNAAQ 0
0 LQMVQEGKMHGFLRMYWAKKILEWTRSPEEALEFAIHLNDRFQLDGRDPNGYV 1
2 GCMWSICGIHDQGWAEREVFGKIRYMNYAGCKRKFDVAQFEHKYSPRE* 0

>CPD_taeGut Taeniopygia guttata (finch) XM_002190577
0  1
2 DNWAFLYAQRLALKQELPLHVCFCLVPKFLGATIRHYRFMLRGLQEVAE 0
0 ECAELNIPFHLLLGYAKDVLPTFVVEHGVGGLVTDFSPLRLPRQWVEDVKERLPEDVPFAQ 0
0 VDAHNIVPCWVASPKQEYSARTIRGKIHAQLPEFLTEFPPVVPHPHLPSCPAE 0
0 PIAWEACYSSLQVDHTVKEVEWATPGTAAGMAVLKSFIAERLKSFSTHRNDPNKAALSNLSPWLHF 1
2 GQVSTQRAILEVQKQRRNYKDSVDAFVEEAVVRRELAENFCYYNENYDSVQ 1
2 GAYDWAQTTLKLHAKDKRPYLYSLQELEQGTTHDPLWNAAQ 0
0 LQMVQEGKMHGFLRMYWAKKILEWTRSPEEALQFAIYLNDRYELDGRDPNGYV 1
2 GCLWSICGIHDQGWAERPIFGKIRYMNYAGCKRKFDVDQFERRYTPTHSQ* 0

>CPD_melUnd Melopsittacus undulatus (budgerigar) AGAI01046895
0 MLRRQRKRKASAPEEIPRVSRKRTEQEEELHEARRRAAPSVREFKFNKKRVRLISQASDLKDGGRCILYWMSRDQRLQ 1
2 DNWAFLYAQRLALKQELPLCVCFCLVPKFLEATIRHYGFMLRGLQEVAE 0
0 ECAELNIAFHLLRGYAKDVLPAFVEEHGVGGLVTDFSPLRLPWQWVQDVREWLPEDVPFAQ 0
0 VDAHNIVPCWVASPKQEYSAYTIRRKIQAQLPEFLTEFPPVVRHPYSPSCPAE 0
0 PIAWEACYSSLEVDRTVKEVEWATPGTAAGLAVLQSFIRERLKYFGSHRNDPNKAALSNLSPWFHF 1
2 GQVSTQRAILEVQKHQHKYKESVDMFVEEAIVRRELAENFCYYNENYDSVQ 1
2 GAYPWAQTTLKLHAKDERPFLYKLQELEQGTTHDPLWNAAQ 0
0 LQMVREGKMHGFLRMYWAKKILEWTHSPEEALQFAIYLNDRYELDGMDPNGYV 1
2 GCLWSICGIHDHGWTERAVFGKIRYMNYAGCKRKFDVRQFERRYAPCTLSQ* 0

>CPD_galGal Gallus gallus (chicken) XM_422729
0 MPRGNGKGRKERDAGREEEEAVGTLEAAVREARRRTAPSVRDFRYNKQRARLVSRGSELKEGAECILYWMCRDQRVQ 1
2 DNWAFLYAQRLALKQELPLRVCFCLVPAFLDATIRHYGFMLRGLREVAK 0
0 ECAELDIPFHVLLGCPKDVLPSFVVEHGVGGLVTDFCPLRVPRQWVEEVKERLPEDVPFAQ 0
0 VDAHNIVPCWVASPKQEYSARTIRAKIHSQLPEFLTEFPPVIRHPHPPPNPPE 0
0 PIAWDACYSSLQVDRTVTEVAWATPGTAAGLAMLQSFITERLKSFGSQRNDPNKAALSNLSPWFHF 1
2 GQVSTQRAILEVQKHRRVYKESVDAFVEEAVVRRELAENFCYYNENYDSVR 1
2 GAYDWAQSTLKLHAKDKRPFLYKLPQLEQATTHDPLWNAAQ 0
0 LQMVREGKMHGFLRMYWAKKILEWTRSPEEALQFAIYLNDRYELDGMDPNGYV 1
2 GCLWSICGIHDQGWKERDVFGKIRYMNYAGCKRKFDVDQFERRYAHCK* 0

>CPD_melGal Meleagris gallopavo (turkey) XM_003209143
0 MPRGSGKGRKERDAGREKEEAEAGAVGSLEAAVREARSRAAPSVRDFRYNKQRARLVSRGSELKEGAECILYWMCRDQRVQ 1
2 DNWAFLYAQRLALKQELPLRVCFCLVPTFLDATIRHYGFMLRGLREVAE 0
0 ECAELDIPFHLLLGCPKDVLPSFVVEHSVGGLVTDFCPLRVPRQWVEEVKERLPEDVPFAQ 0
0 VDAHNIVPCWVTSPKQEYSARTIRAKIHSKLPEFLTEFPPVIRHPHPPPNPPE 0
0 PIAWDACYSSLQVDHTVTEVAWATPGTAAGLAMLQSFITKRLKSFGSQRNDPNKAALSNLSPWFHF 1
2 GQVSTQRAILEVQKHRCAYKESVDAFVEEAVVRRELAENFCYYNENYDSVR 1
2 GAYDWAQSTLKLHAKDKRPFLYELPQLEQATTHDPLWNAAQ 0
0 LQMVQEGKMHGFLRMYWAKKILEWTRSPEEALQFAIYLNDRYELDGMDPNGYV 1
2 GCLWSICGIHDQGWKERDVFGKIRYMNYAGCKRKFDVDQFESRYTHCK* 0

>CPD_allMis Alligator mississippiensis (alligator) genome/blat
0 MFPKKQRQAAGADTEPSGSRKRGRQDAEVVPGAESLAEAVKQARRRAALSVREFKFNKKRVRLLSQESHLQDGALGILYWMSRDQRVQ 1
2 DNWAFLYAQRLALKQQLPLHVCFCLVPKFLDATIRHFGFLLKGLQEVAE 0
0 ECGELGIPFHLLQGYAKDVLPAFVTRHGIGGVVTDFSPLRVPLQWVEDVKERLPQGVPLVQ 0
0 VDAHNIVPCWVASNKQEYGARTIRPKIHAQLPEFLTEFPPIIQHPFPAAAPAQ 0
0 PIDWDACYAGLEVDRTVPEVKWATPGTAAGLAVLQAFVTRRLPGYSEYRNNPNKAALSNLSPWFHF 1
2 GQVSVQRAVLEVQKSRDRHRESVNSFVEEAVIRRELADNFCFYNKSYDQLE 1
2 GAHDWARDTLILHARDKREYLYDLHQLEQGKTHDQLWNAAQ 0
0 IQMVREGKMHGFLRMYWAKKILEWTRSPEDALRFAIYLNDRFELDGRDPNGYV 1
2 GCMWSICGTHDQGWAERNVFGKIRYMNYAGCKRKFNVGQFEHKYRP* 0

>CPD_chrPic Chrysemys picta (turtle) AHGY01112360 incomplete
0 MSQKSRNRQARGGEEISGDAARPGAAAAPRGQLKGKRKVLAEPGGAEVLTVEKRRKEGEAAEGGGAGSLGEAVRQARLQVAPSVQDFKYNKKRVRLVSQGSDLKDAAQGVVYWMSRDQRVQ 1
2 DNWAFLYAQRLALKQQLPLHVCFCLVPKFLEATIRHFGFMLKGLQEVAE 0
0 ECQELDIPFHLLIGFAKDVLPAFVTGRGLGGVVTDFSPLRVPMQWVEDVKERLPGDVPFVQ 0
0 VDAHNIVPCWVASDKQEYGARTIRRKIHDQLSEFLTEFPPLIKHPYPSTAPAE 0
0 PIDWNACRASLQVDCSVKEVTWATPGTAAGLAVLESFIGERLKSFGTDRNNPNR------------ 1
2 ---------------------SVDGFIEEAVIRRELADNFCYYNRNYDKVE 1
2 GAYDWAKTSLKLHAQDKRSHLYELKQLEEGKTHDPLWNAAQ 0
0 LQMVHEGKMHGFLRMYWAKKILEWTRSPEEALEFTIYLNDRYELDGRDPSGYV 1
2 GCMWSICGIHDQGWAERAVFGKIRYMNYAGCKRKFDVGQFERRY-------* 0

>CPD_anoCar Anolis carolinensis (lizard) XM_003226963
0 MPQKRKKRKEPASGDCENQVEGDGGTSFGSESGDKKTEGKPEEKKPKKTAAVAKGPPLTEAVKASRLKMAPSIAEFHFNKKRVRMISENSDLKEGAQGILYWMSRDQRVQ 1
2 DNWAFLYAQRLALKQNLPLHVAFCLVPKFLEATIRQFGFMLKGLKEVAE 0
0 ECQELSIPFHLLIGFAKDTLPPFVAKHNIAGVVTDFAPLRVPMQWVQEVQERLPPDVPFVQ 0
0 VDAHNVVPCWVASEKQEYGARTIRRKIHDRLCEFLTGFPPVIQHPHQAASQAE 0
0 PIDWDACSASLEVDRSVPEVEWAKPGSAAGLLVLGEFVQERLKFFSSDRNNPNRAALSNLSPWFHF 1
2 GQVSVQRAILEVRKHRTRCRESVEAFIEEALIRRELADNFCFYNPNYDKVE 1
2 GAYEWAKTTLKLHATDKRPHLYTLKQLEEGKTHDQLWNAAQ 0
0 LQMVHEGKMHGFLRMYWAKKILEWTNSPEEALKFSIYLNDRYELDGRDPNGYV 1
2 GCMWSVCGIHDQGWAERAVFGKIRYMNYAGCTKKFDVGQFERKYNPRKIAY* 0

>CPD_pytMol Python molurus (python)
0                                   YNKKRVRLVSQAPELKEGAQGILYWMSRDQRVQ 1                            
2 DNWAFLYAQRLALKQRLPLHVCFCLVPKFLDATIRHFGFMLRGLEEVAE 0
0 ECRTLDIPFHLLIGYAKDTLPPFVAQRGIGGVVTDFSPLRLPMKWIQEVLEQLPSDVPFAQ 0
0 VDAHNIVPCWVASDKQEYGARTIRRKIHDQLAEFLTEFPPVIKHPFPVGLQEE 0
0 PISWDACYSSLQVDCSVKEVDWAKPGAASGLKVLEEFVKERLKHFASGRNNPNQAALSNLSPWFRF 1
2 GQVAVQRAILEVYKHRTRYKESVEGFIEEAVVRRELADNFCFYNPNYDKIE 1
2 GAYDWAKTTLKIHAKDKRPHLYTLKQLEEGKTHDPLWNAAQ 0
0 LQMVQDGKMHGFLRMYWAKKILEWTRSPEEALQFSIYLNDRYELDGRDPNGYV 1
2 GCMWSICGIHDQGWAERAVFGKIRYMNYAGCKRKFDVGQFERKYGAHSFTQ* 0

>CPD_xenTro Xenopus tropicalis (frog) NP_001135721
0 MDTKAKSKTITKSPGKRKTPGKVLSETSSGESSDVDAKKKKKMVEQTEEKGVGGAVKISRVEAAPSVSEFKFNKKRVRLvSTEADLKDDAQGIVYWMSRDQRVQ 1
2 DNWAFLYAQRLALKQKLPLHVTFCLVPKFLDATIRHYGFMVKGLQEVAE 0
0 ECKELNIPFHLLIGYAKDILPNFVKKHAIGGVVTDFSPLRVPLQWVEDVSKRLPKDVPLVQ 0
0 VDAHNIVPCWVASNKQEYGARTIRKKIHDQLSQFLTEFPPVIKHPYEPKLEAE 0
0 PVDWDNCYNSLEVDRTIGEVEWAKPGTNAGFNVLQSFISERLRHFNSDRNNPNQNALSNLSPWFHF 1
2 GQLSVQRAILEVQKYRSKCKDSVDSFVEEAVVRRELADNFCFYNKNYDKIE 1
2 GAYDWAKNTLKDHAKDKRTHLYTLEKLEAGKTHDPLWNAAQ 0
0 LQMVHEGKMHGFLRMYWAKKILEWTSSPEEALHFSLYLNDRYELDGRDPNGYV 1
2 GCMWSICGIHDQGWAERAVFGKIRYMNYQGCKRKFDVAQFERRYHPKKFSQ* 0

>CPD_lepOcu Lepisosteus oculatus (spotted_gar) AHAT01034265
0 MSGRSPPSPQGGAAGKGAAKRKLQGGEGTGEKKAKKTAPEQGAGWLAEAVAQSRRQAGLSVQGFGFDKKRMRVLSKASAMKGGSEGVLYWMSRDQRVQ 1
2 DNWALLYAQQLALEEQLPLHVCFCLVPCFLDATIRQFGFLLRGLEEVAK 0
0 ECSALGLEFHLLRGSAGEVLPQFVQKQGLGAVVTDFAPLRLPLQWVEEVKERLPQDIPLIQ 0
0 VDAHNVVPCWVASDKQEYSAKTIRKKITSKLPDFLKEFPLVAEHPHRASKPAK 0
0 IIDWEQARSSLAVDRSVKEVSWARPGAAAGLEVLESFIDHRLKDFATQRNNPNGEALSNLSPWLHF 1
2 GQVSAQRVVLEVRRHGRRWPQSVDVFVEEVVVRRELADNFCFYNKKYDRVD 1
2 GAYEWAQKTLREHAKDRRPYLYSRGELEASRTHDKLWNAAQ 0
0 FQMVSEGKMHGFLRMYWAKKILEWTASPEEALATAIYLNDRYELDGRDPNGYV 1
2 GCMWSICGIHDQGWKEREIFGKVRYMNYAGCTRKFNVPKFEIKYNPKRCDDEDGNRKRGGD* 0

>CPD_danRer Danio rerio (zebrafish) NM_201064
0 MSANKNNLKRQMKSTISAGGKQPKLTGEKGKESGWLLKEVAELRRAAQGCEFNKKRLRYLSDTQKVKQSSQGVLYWMSRDQRIQ 1
2 DNWALIYSQQLALAEKLPLHICFCLVPKFLDATYRQYAFMLKGLQEVVK 0
0 ECKSLDIEFHLLSGEPVHNLPAFVKSWNIGAVVTDFNPLRISLQWIDTVKKHLPSDIPFIQ 0
0 VDAHNVVPCWEASTKLEYGARTIRGKITKHLQEFLTDMPLVDTHPYCASRAAK 0
0 IIDWEEVLSSLEVDHNVCEVEWAQPGTTGGMFMLESFIDQRLHIFATHRNNPNSDAVSHLSPWIHA 1
2 GQLSAQRVVMQVKRKKNASESVASFIEEIVVRRELADNFCFYNQNYDNIS 1
2 GAYDWAKKTLQEHAKDRRQYLYTKKELESAETHDQLWNAAQ 0
0 RQLLLEGKMHGFLRMYWAKKILEWTASPEEALSIAIYLNDRLSLDGCDPNGYV 1
2 GCMWSICGIHDQGWAERPIFGKIRYMNYAGCKRKFDVEQFERKYAAIKKNPNLNAKISV* 0

>CPD_petMar Petromyzon marinus (lamprey) rough revised sequence
0        MCLSRLTIVFKLSSWLVNVVGSGNFEEQISKTRAALASSVLEFRFNKKRVRAVSNADDMAANASGILYWMSRDQRVQ 1
2 DNWALLYAQRLALKQRLPLYVCFCLVPKFMDATIRHFGFMLRGLQEVEK 0
0 EFRSLDISFHLLKGYAKDVLPPFVNEKNIGAVVTDFLPLRVPRQWVKDLKKALPKNVPLAQ 0
0 VDAHNVVPCWVTSDKLEYGARTIRRKIHDKLPQFFTEFPPAIKHTYPAKSLPE 0
0 ETDWEAAWQSLEVDRSVGEVAWAQPGTSAGLEMLNSFINERLKLFSTDRNNPTAMHSATSSPVIHF 1
2 GQISVQRCALEVSKLKPKYRESVDMYIEEAIVRRELGDNFCFYNKNYDSLD 1
2 GAYDWAKRSLDAHTQDNREYIYSLQQLEEAKTHDPLWNAAQ 0
0 LQMVVEGKMHGFMRMYWAKKILEWTSSPEEALRIAIYLNDRYQLDGSDPNGYV 1
2 GCMWSICGTHDQGWAERAVFGKIRYMNYAGCKRKFDVGAYESRYSSKLGF* 0

>CPD_braFlo Branchiostoma floridae (amphioxus) XP_002586934 FE570347 fixed frameshift exon 4
0 MSSGDKRKSSGSGDSPAKKAKVETGRSSAQDGAGSEDFLDQIAERRQNVCESVAGFKFNKKRCRQMSDVGDLKQNCGGIMYWMSRDQRVQ 1
2 DNWALLFAQRLAMKHKVPLYVCFCLVPKFLDANIRHYGFMLKGLEEVEK 0
0 ELTDLDVSFHLLTGYAVGFLPGFVDEKNIGGVVTDFSPLRTPLKWVHDLAGKLPSDVPFVQ 0
0 VDAHNIVPCWEASPKQEYGARTIRGKIHNQLSSYLTEFPPVSQHPHPPKDKPE 0
0 PTDWAAARASLKVDMTVAEVTWATPGTTGGLRMLESFCKQRLKNFGTDRNNPNKRALSNLSPWIHF 1
2 GQISVQRCILTVKKYRSKYKESVDAYIEEAIIRRELSDNFCFYNHDKYDSIK 1
2 GASAWAQKTLKDHAGDKREYLYSREQLEQAKTHDDLWNAAQ 0
0                                        DKYSLDGRDPNGYV 1
2 GCMWSICGIHDQGWAERPVFGKIRFMNYNGCKRKFDVAQFVTKYKAKGYLKK* 0

>CPD_strPur Strongylocentrotus purpuratus (urchin) JT122393 JT102939 FJ812411
0 MITFSVQGLKLGHHCQCWKVVFLSRFISSRSYSSIMGKDGQTAKRSSEGQDNGETSAAKKVKKEEDGAEVQDLQTKVASLRNASGSSILNFKFNKKRVKILSDTMDIAEDNRGIVYWMSRDQRVQ 1
2 DNWALLFAQRLAMKQEVPLHVCFCLVPKFLEGTIRHFNFVLEGLKEVSQ 0
0 ECKELNIPFHLLIGYAKDILPNFVKKHAIGGVVTDFSPLRVPLQWVEDVSKRLPKDVPLVQ 0
0 VDAHNVVPCWEASNKLEYGARTIRPKITKQLSTYLTEFPPVICHPQKAKAKAE 0
0 PIDWEGAYASLEVDQTVKPVDWAKPGTSEGMKMLDSFVKERLRYFSSARNDPTKSVCSNLSPWIHF 1
2 GQLSSQRAALIVRLYRSRFSESVAAFIEESIIRRELSDNFCFYNDKYDSIE 1
2 GTNDWAKKTLKDHAKDKRDYVYSRETLERAKTYDQLWNSAQ 0
0 KQMVREGKMHGFLRMYWAKKILEWTTSPEEALEIAIYLNDRYSLDGRDPNGYV 1
2 GCMWSICGIHDQGWGERPVFGKIRFMNYKGCKRKFDVDTFVNRYKKYNL* 0

>CPD_aplCal Aplysia californica (sea_hare) scaffold_446:238,174
0 MESDSPSKSEAGGDTGDFIERINKQRTSVCASVDKFKFNKNRVRVLSKEEDFPDDSDGVVYWMSRDQRVQ 1
2 DNWAFLYAQRLALKLEAPLHVCFCLVPKFLEATIRQFGFLLKGLAQVEK 0
0 ECRELNIAFHLLLGEASKVLPQFVKDNSIGGVVTDFSPLRTPAKWVDELKEALPEDVPLCQ 0
0 VDAHNIVPCWLASPKLEYGARTIRNKIHNQLGSFLTEFPPVSRHPHPPSKMPP 0
0 VTDWKAADGYLQVDRSVAEVTWAKPGTDPGLRMLESFCEKRLKSFATSRNDPNKQALSNLSPWIHF 1
2 GQISVQRCILMVKKYRSKSSEGVNAFIEEAVIRRELADNFCFYNEKYDSVK 1
2 GAYDWAQKTLKIHSGDKRPYLYDREKLEQGKTHDDLWNAAQ 0
0 IQMVTEGKMHGFLRMYWAKKILEWTPSPAVALTEAIYLNDKYNLDGRDPNGYV 1
2 GCMWSICGIHDQGWAERDVFGKIRYMNYKGCQRKFDVANFVRKYGKKKA* 0

>CPD_vilLie Villosa lienosa (mussel) JR505029 transcript assembly mollusc
0 MADGKRSKRKGVDEPYAEKKKLKGNEAQDTEQDFLSKIKYARLNVCKSVEEFKYNKKRVRIVSRCEEFPDACDGIVYWMARDQRVQ 1
2 DNWAFLYAQKLALKMQVPLHVCFCLVPKFLDANIRHYGFMLKGLQEVEE 0
0 ECRSLGISFNLLIGYAKDVLPDYVKKNKIGGVVTDFSPLKLPLQWVKDVGDALPKSVPFCQ 0
0 VDAHNIVPCWEASPKLEYSARTIRNKIHDKLSQFLTEFPPVIYHPHTAKSKSE 0
0 PLDWKAAEASLQVDRSISEVTWAKPGTIGGLLMLESFCKERLKYFASDRNNPNKNALSSLSPWIHF 1
2 GQISVQRSILMVRLYRGRFKDGVEAFIEEAVVRRELADNFCYYNENYDKVE 1
2 GAYDWAQKTLKDHEKDKRPYLYTKEQLEKARTHDDLWNSAQ 0
0 IQMVSEGKMHGFLRMYWAKKILEWTKTPQEALEISIYLNDKYNLDGRDPNGYV 1
2 GCMWSICGIHDQGWAERDVFGKIRYMNYAGCKRKFDVSLFERKYKNKNSDLMEKHKEG* 0

>CPD_droMel Drosophila melanogaster (fruitfly) thymidine dimer photolyase CG11205 uses 5-deazariboflavin
0 MFTLASYWRESFKI 0
0 VLPLQAMKRTKAQKAGPSKKAAKNEKASSEPKSDQESSDEEASTSKALLVSKPDYQNFEQFLTHLEHQRVCTAANIQEFSFRKKRVRVLSKTEDVKESSL
GGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNATIRHYKFMMGGLQEVEQQCRALDIPFHLLMGSAVEKLPQFVKSKDIGAVVCDFA
PLRLPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVRHPHGTGCKNVNTVDWSAAYASLQCDMEVDEVQW
AKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEK 0
0 SLTYDDLWNSAQLQLVREGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAIFGKVRYMNYQGCRRKFDVNAFVMRYGGKVHKKK* 0

>CPD_nasVit Nasonia vitripennis (wasp) XM_001603235  trimmed N-terminal
LVKQIEEQRNQTADSVMTFKFNKKRVRILTDSDEVSSESKGIVYW
MFRDARVHDNWAMLFAQKIALKNKVPLHVCFCILPKFLDATIRHYKFLLEALEEVEKDCKELNINFHLLHGEPNTAIINFVEKYKMGAVIADFFPLRLPLFWLEDIKKKLPKKIPL
CQVDAHNIVPCWVASEKLEYAARTIRNKINSKLDEFLTEFPPVIKHPHTSDQKFDKINWDTALDDVLVDKSVDKITWAKAGYKGGIAELDKFLKIRLRIYDEKRNNPIFNALSNLS
PWFHFGMISVQRCILEAKKYKSQYNKSVEAFMEEAIVRRELSDNFCFYNEHYDSLKGAYDWARETLNQHRNDKRDYIYTLNELENGLTHDDLWNAAEIQLVKEGKIHGFLRMYWAK
KILEWTETPDDALKWSIYLNDKYSMDGRDPNGYVGCMWSICGVHDQGWRERPVFGKIRYMNYKGCERKFDVQAFVMKYGAKVQLTKDENKRKGKKK* 0

>CPD_bomImp Bombus impatiens (bumble_bee) XM_003488984
MDELNPSKRKKVSESIMTFNFNKQRIKHLSELNDVKENCKGILYWMFRDIRTQDNWALLFAQKIAVKRNVPLHICFCIMPSFLNASMRYYKFLLKGLMEIEE
ECKQLNLNFHLLHGEPNESILKFVKTYNMGAVIVDFYPLKLPMLWIDNVQKNLPEDIPIYQIDAHNIVPCWYASSKQEFAAKTIRNKINTKLQEFLTEFPPVIKHPYLTKEKFENN
NWDITLQDVEASKPTTEITWAKPGYRNGIKELENFIQNHLQKYGDERNNPLSNVISNLSPWFHFGMISVQRCILEIQEYKGLYKKSVESFMEEAIIRRELSDNFCFYNEKYDLVEG
AYPWAIKTLNKHRKDTRKYVYSLSQLENSKTHDDLWNACQNQMIITGKMHGFLRMYWAKKLLEWTEIPEIALEWANYLNNKYSIDGCDPNGYVGCMWSICGVHDHGWPERDIFGKI
RYMNYNGCKRKFNVAEFVMKWGKKKASELI* 0

>CPD_apiMel Apis mellifera (bee) XM_003250426
MEELNPFKRRKTSESIMTFKFNKKRIKRLNNLNDIKENCNGILYWMFRDIRIQDNWALLFAQKAALKNNVPLHICFCLISNFLNASIRYYKFLLKGLEEIEK
ECKKLNINFHLLHGEPNINILKFIKIYNMGAIITDFYPLKLPMLWIDNVKKNLPKDIPICQVDAHNIVPCWYASSKQEFAAKTIRNKINTKLEEFLTEFPPVIKHPYTTKEKFEKN
NWKIALQNVEVDKSVKEITWAKPGYENGIKELENFLQNRLKKYGDERNNPLSNAISNLSPWFHFGMISVQRCILEIKEYKKLYKKSVESFMEEAIIRKELSDNFCFYNEKYDLIEG
AYPWAIETLNKHRKDKRKYIYFLNHLENSETHDDLWNACQNQMVTIGKMHGFLRMYWAKKILEWTETPEIALKWANYLNNKYSIDGCDPNGYVGCMWSICGVHDHGWPERDIFGKI
RYMNYEGCKRKFNIAEFVMKWGKKKTNELI* 0

>CPD_anoGam Anopheles gambiae (mosquito) XM_313925 trimmed N-terminal
YVAMLKADRKATAKSILDFDFNKKRVRILSDA
KTIEDGKQGVLYWMSRDARVQDNWAFLFAQKLALKNDLPLHVCFNLVPKFLDATIRHFKFMLKGLEEVAEECRRLNIQFHLLRGSAGENVPAFVKKHKIGGVVCDFSPLRVPMKWV
DEVRKALPMEIPLCQVDAHNIVPVWVTSDKLEYAARTIRTKVNKNLPTYLTPFPPLVKHPFTANFEADPINWTQVLDTLQVDRTVEAVEWATPGYAGGVKTLQTFVEKRLGKFNDK
RNDPTENALSNLSPWFHFGQIAVQRAVLTVKKHGKRYSESVASFCEEAIVRRELSDNFCFHNKNYDNLQGAYDWARKTLDDHRKDKRVYCYSREELETAKTHDDLWNSAQLQMVKE
GKMHGFLRMYWAKKILEWTKTPEEALETAIYLNDRYSLDGRDPNGYVGCMWSIAGIHDQGWKEREIFGKIRYMNYDGCKRKFNVNAFVVRYGGKVHRRK* 0

>CPD_aedAeg Aedes aegypti (mosquito) XM_001653905 trimmed N-terminal
FVEKFKTIRKETAKSILDFDFKKKRVRILSDAKEVEENKKGVIYWMSRDARVQDNWAFLFAQKLALKNELPLHV
CFSLVPKFLDATIRHYKFMLKGLEEVAKECESLNINFHMLTGMAKDTIPKFVKTHNIGAVVCDFSPLRVPMKWVEDVRKSLPAEVPLCQVDAHNIVPLWVTSEKQEYAARTIRNKV
NNNLNTYLTQFPPVIKHPHKASFKADSIDWVKLLDTIEVDRTVDEVDWAVPGYTGGIGVLQSFVEKRLRKFNAKRNDPTDDALSNLSPWFHFGQISVQRCVLAVKKYGKGYSEGVA
AFCEESIVRRELSDNFCYYNKNYDNLKGAYDWAQKTLDDHRKDKRTYVYSRDQLEQARTHDDLWNSAQIQMVKEGKMHGFLRMYWAKKILEWTKTPEEALETAIYLNDRYQLDGRD
PNGYVGCMWSIAGIHDQGWREREVFGKIRYMNYEGCKRKFDVAAFVARYGGKVYKK* 0

>CPD_acyPis Acyrthosiphon pisum (aphid) XM_001949116 trimmed N-terminal
FLNDVAAERNKTASSIMEFKFNKKRVRVLSEQKEVPEWAEGVIYWTFRDERIHDNWALLYAQKLAIKNKVSLHITFC
RLKQFLDCSLRHYKHIFQGLEELETECKSLDIQFHFLIGCAADILPDFVKKHKLGAIIVDFMPVREHISWTKQLADRIGSEVPVIQVDAHNIVPCWVASDKQEYSARTIRNKINNK
LPEFLTEFPPVIKHPFRSTFKAKPTNWDEADKTLEVDRSVVSVPGLKAGFKAGMSELEQFLKKRLPKYSTDRNNPVKDGLSKLSPWLHFGQISAQRCILEVSKLSKQYPDSVAAYR
EEAIVRRELSDNFCFYNPKYDKIEGAPNWAQTSLNEHRKDKRMFVYTREELESSRTHDDLWNSAQIQLVKEGKMHGFLRMYWAKKILEWTDTPDRALADAIYLNDKYSMDGRDPSG
FVGCMWSICGIHDQGWKEREIFGKIRYMNYAGCKRKFDINAFIARYGGMVHKYTKK* 0

>CPD_nemVec Nematostella vectensis (anemone) ABAV01006764 XM_001636204 bad BACK01030119
0 MASDEPAAKRRKQEVTGPNKSELDQLDDIVKTYKEKRMSVCNSVTDFKFNKKRVRMLSKEGSISENQCGGVVYWMWRDQRVQ 1
2 DNWALLYAQRLALKQQAPLHVCFCLPSNFLDATLRQYNFMIKGLQEVEK 0 
0 ELKELEISFHLLLGDPGKVLPEFVKSAGIGGIVVDFCPLRLPTQWVNDVVKAVPKDVPVCQ 0
0 VDAHNIVPCWHASPKLEYGARTIRPKIHKVLTEFLTEFPPVIKHSHVSGEKTK 0
0 TTDWDAVDTFIEVDRSVGEVDWAKPGTAEGLFMLESFCKDRLKYFHSSRNDPTKRALSNLSPWFHT 1
2 GQISPQRAILRVRDFRSKFRESVESFIEECIIRRELSDNFCYYNNEKYDSI 1
2 EGTNEWARKTLNDHAKDKREYLYARGKLEKAQTHDDLWNAAQ 0
0 RQLVREGKLHGFLRMYWAKKILEWTDSPETALSDAIYFNDKYALDGIDPNGYV 1
2 GCMWSVCGIHDQGWAERPVFGKIRYMNYKGCQRKFAVAEFVKRYKP* 0

>CPD_acrDig Acropora digitifera (coral) BACK01030119 cnidarian one intron missing
0 MASQPPAKRRKEESSENGDDILASCMAKRAQVCASVADFKFNKKRVRLLSKSTDISDDCKAIAYWMWRDQRVQ 1
2 DNWALLYAQRMALKQEVPLVVCFCLPSKYLHSTFRQYSFMIKGLQQVEK 0
0 ELASLN-INFHMLLGEPNIVLPDFVKSENIGGIIADFTPLRKPMKWLNDVMDKLPKNVPVCQ 0
0 VDSHNIIPCWQASPKLEYGARTIRPKIHNQMREFLTEFPPVIKHPHAGKASIK 0
0 TDWKAADEFIEVDRNVQEVNWAEPGTKAGLEMLESFCKDRLKFFATDRNNPTKEALSDLSPWFHA 1
2 GQISVQRAILRVREFRGSSKDSVETFIEEAVVRRELADNFCFYNQEHYDSI KGAKDWAQKTLNDHAADKREYLYTREQLEKGQSHDDLWNAAQ 0
0 LQLVNEGKMHGFLRMYWAKKILEWTESAEEGLEISLYLNDKYSLDGTDPNGYV 1
2 GCMWSVCGIHDQGWAERPVFGKIRYMNYNGCKRKFDVGEFVRKYGATTSKEADGPAKKRKKAK* 0

>CPD_ampQue Amphimedon queenslandica (sponge) ACUQ01006132 XM_003388698 bad
0 MQCKQKNKAWSSKLTATPILCKKIKMAAGSQAAGAARGAALQESLLIAGSSFNMKRCRLITKPTAGKSSIVKGPVLYWMSRDQRVQ 1
2 DNWGLVYSQELANKHGVPLLVAFTLVPKFLDATWRQYSFMMSGLQEVEK 0
0 ELLKLKIPFHLLLGKAQSCLPSFIAKESVSVVVCDFSPLRVPLGWVKETGAELDKIKVPLVQ 0
0 VDAHNIVPVWLASDKQEYAARTLRNKIHKFLPEFLTEFPLVTLHTHNSKLTMK 0
0 STNWIKARESLEVDMTVSEVSWATPGTNAGLKVLDDFCTKRLKFFAAQRNDPNKDSLSNLSPWYHF 1
2 GQVGVQRAILKVKSYSSKHSESVSAYIEEAVVRRELADNFCYYNPHYDSI 1
2 YHYCDLFFFFSRAHKKDKREYIYTQEQFESSSTHDPLWNAAQ 0
0 LQMVQEGKMHGFLRMYWAKKILEWTSSPEEGLRIAIYLNDKYEIDGRDPNGYV 1
2 GCMWSICGIHDQGWAERSVFGKIRYMNYQGCKRKFDVGQFERKYNKKRKLGEQ* 0

>CPD_monBre Monosiga brevicollis (choanflagellate) ABFJ01000652 related intronation but numerous differences
0  0
0 LYWMSRDQRVQ DNWAFLYAQRLALKQRLPLHVCFCLVPKFLDATIRHFGFMLRGLEQ 0
0 VETHLRKKHIPFHLLTGYAKDVLPKFAEEQEACAVVCDMSPLRVPMAWVKETGSKLKDMNVPLYQ 0
0 VDAHNIVPVWHASPKQEYAARTIRNKIHQKLDTCLQPFPELESNSNSVQLPDT VDWKKARESLEINWDVKEVDWLKPGYEGGMKMLEEFINERLHRYADDRNDPNLDALSNLSPYYHFGQ 0
0 ISVQRVVLELRSKQRGKYAEGVKAYIEEAVVRRELSDNFCFYNHRYDSVE GASAWAQETLDVHSKDKR 2
1 EHLYTRKQLENAETADDLWNASQLQLVQEGKMHGFLRMYWAKKILEWTESPEKALEDAIYLNDKYELDGRDPN 1
2 GYVGCMWSICGIHDQGWGERPVFGKIR 21 YMNYKGCKRKFDIAAFVKRYPPAAKNAARGKDGR* 0

>CPD_salSpp Salpingoeca species (choanflagellate) ACSY01000967 different intronation still
0 VYWMSRDQRAK DNWALLYARSLARSARVPLVVVFSLVPKFLDATIRHYGFMLRGLHQ TAKHLHEKLVPFHLLQGSAATTVPAFAAQHEAAAVICDMSPLRVPLRWVKDVGQALEAQNVPLLQ VDAHNIVPVWVTSQKQEYAARTIRPKIHKHLDTYLQPFPELDANDKDTLGDMELPPVFDLEAQFDMLEVDTSVKE 0
0 VDWIEPGYEQGMAAAEAFGRDRAKKFDELRNNPNEDVCSNLSPYFHFGQ ISAAAVVLLLKSKYSKKAAKGVQTFIEEAVVRRE 0
0 LSDNFCFYNRRYDSIDGAAVWARDTLDTHRHDKR 2
1 EYVYTREQLEQGKTHDDLWNAAQLQ 0
0 MVERGKMHGFLRMYWAKKILEWTATPEDALQTALFLNDRYELDGRDPN 1
2 GYVGCMWSIAGIHDQGWAERAVFGKIR 21 YMNYKGCKRKFDVARFVSRFPQAVANAA* 0

>CPD_araTha Arabidopsis thaliana (cress) PHR1 NM_179320 AFMZ01000529 GC-AG splice exon 6-7
0 MASTVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFLDAKARQLGFMLKGLRQLHHQIDSLQIPFFLLQ 0
0 GDAKETIPNFLTECGASHLVTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVR 2
1 EGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQ 0
0 AVDTFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYS 2
1 LEQLEKGLTADP 0
0 LWNASQLEMVYQGKMHGFMR 2
1 MYWAKKILEWTKGPEEALSISIYLNNK 0
0 YEIDGRDPSGYVGCMWSICGVHDQ 0
0 GWKERPVFGKIRYMNYAGCKRKFNVDSYISYVKSLVSVTKKKRKAEEQLTRDSVDPKITIV* 0

>CPD_orySat Oryza sativa (rice) B096003 BACJ01049170 aka:PhrII,Class II PMID:22170053 PDB:3UMV 
0 MPPTSVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTG 0
0 GPAEIPALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQ 0
0 VDAHNVVPVWTASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCS 2
1 EAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALEAKKCRHLSPK 0
0 SVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYT 2
1 REQLENAKTHDP 0
0 LWNASQLEMVHHGKMHGFMR 2
1 MYWAKKILEWTSGPEEALSTAIYLNDK 0
0 YEIDGRDPSGYVGCMWSICGLHDQ 0
0 GWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLAGQSKKRNAEESPNPVVKLSKSQH* 0

Cryptochromes from cnidarians, trichoplax, sponges, choanoflagellate and diatoms

This collection of cryptochromes and photolyases serves as deeper outgroups to bilateran sequences. Some do not classify clearly and others represent clade-specific gene family expansions. Those with minimal introns may represent retroprocessed genes that were subsequently re-intronated at new locations. Those clearly orthologous to DASH and CPD have been moved to those sections. As the other sequences are classified, they will be moved to their corresponding orthologous class above to the extent that is useful.

The five Arabidopsis cryptochromes/photolyases have been re-named according to contemporary classification but with common synonyms provided in their fasta header. To collect all the available sequences for this or any other species, simply use web browser search (eg '_araTha') or sort the summary page of fasta headers by species. 


>CRY1A_acrMil Acropora millepora (coral) EF202589
MSLNLKSVEDNNSAVSAEKSQGKLKAKHAIHWVRKDLRLHDNPSLLEAVKGSDTVRIIYVLDTKVDHATGIGLNLWRFLLQSLEDVDDSLRKLNSRLFVV
RGQPADVFPRLFREWKTSFLTFEEDSEPFGREKDAAIRLLAQESGVEVAVGRSHTLYDPQLIIKHNSGTAPLTYKKFLAIVRSLGNPQHPCATLDVHLLG
GCSTPVSEDHEEKFGVPSLKELGLDVAKLSTEIWHGGETEALIRLDRHLERKAWIASFEKPKVTPNSLFPSPTGLSPYLRFGCLSPRLFYHRLSELYRKV
KCKDPPISLYGQLLWREFFFTVAANNPNFDQMDENPVCLQIPWTANPEWLKKWEQGQTGFPWIDAIMIQLKQEGXIHHLARHAVGCFLTRGDLWISWEEG
MKVFERWLLDAEWSLNAGNWMWLSCSAFFQQFFNCICPVGFGRKLDPNGDYVRKYLPVLKGFPAKYIHAPWTAPENVQRAARCIIGKDYPRPIVDHHKVS
TANLEKMRNVFKALLRYKESTVVATSEKSDGSKDKQAKLKQQMLNLEDKENR* 0

>CRY1B_acrMil Acropora millepora (coral) EF202590
ICVQRLKDLCFSLDILGHTSLHWFRKDLRLHDNPSLRECLRNSKVFYGVYFLPPSEAKQGSVSLNRWGFLLESLRDLDTSLVECGSRLFVIRGNPVEMLP
NLFKKWNINQMSFEVDSEPYSNSRDLVISHLAKENGIEVISRVSHTLYDPRILRGLSSGIVPLLFDEFKESVLQKRQPEKPVPKVGRKLFGACVTPVGSD
HQQCYGVPRLDEIGGKFSKSGSVCSELYKGGESEALKRMETALQWMVKNDFTEPEITIHSLLXSATHLSPYLRCGCLSPRLLHQRITEEYIKSKGVSPPS
ELFVKLLWREFFFVVGGQIPDAHEMINNPISLEIPWEDSVEYLERWKKGTTGFPWIDAIMRQLRTEGWIHNIARRAVASFLTRGCLWVNWEEGFKVFDEF
QLDAERSLNVGNWLWVSTSTFVKGPVPWFCPVGVGKKIDPTGEYVRKYVPEIRNLPTEYIFEPWLTPRDLQRSYGCVIGRDYPAPIVNHVKQRAICVQRM
QELAFKLASKIRWRQVLNVI* 0

>CRY1A_nemVec Nematostella vectensis (anemone) XM_001623096
MSGMDKFTTDSCNLVKAKKTSHSIHWLRKGLRIHDNPALRDAVLNWGTFRVVYILDTKSVASSNIGLNLWRFLLQALEDLDDSLRKLNSRLFVIRGQPAD
VFPRLFREWGITRLTFEEDSEPFGKERDSAICMLAREAGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQELGHTPL
SDNHDELYGVPTMEELGLETSKLFVEVWHGGETEALKRLDRHLERKAWIASFGKPKVTSDSLMASPSGVSPYLRFGCLSPRLFYYRLMDLYRKVKGGPPP
TSLYGQLLWREFFFVVSTNNPNFDKMESNPICLYIKWRTDKQVASDLQKWTDAQTGFPWIDAIMSQLKQEGWIHYLARVAIASFLTRGCLWISWEAGMKV
FAEHLLDADWSSNAGNWMWWSYSAFSQQFFNPPCPVEFSKSLDASGDYIRKYLPVLKGFPARYIHEPWKAPLNVQKMAKCIIGKSYPSPMVDHEKAVSKN
MEEMTSVYKSVIQYRISVLSSEEKQIEETKSQFQMPETSMH* 0

>CRY1B_nemVec Nematostella vectensis (anemone) XM_001623096
MSGMDKFTTDSCNLVKAKKTSHSIHWLRKGLRIHDNPALRDAVLNWGTFRVVYILDTKSVASSNIGLNLWRFLLQALEDLDDSLRKLNSRLFVIRGQPAD
VFPRLFREWGITRLTFEEDSEPFGKERDSAICMLAREAGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQELGHTPL
SDNHDELYGVPTMEELGLETSKLFVEVWHGGETEALKRLDRHLERKAWIASFGKPKVTSDSLMASPSGVSPYLRFGCLSPRLFYYRLMDLYRKVKGGPPP
TSLYGQLLWREFFFVVSTNNPNFDKMESNPICLYIKWRTDKQVASDLQKWTDAQTGFPWIDAIMSQLKQEGWIHYLARVAIASFLTRGCLWISWEAGMKV
FAEHLLDADWSSNAGNWMWWSYSAFSQQFFNPPCPVEFSKSLDASGDYIRKYLPVLKGFPARYIHEPWKAPLNVQKMAKCIIGKSYPSPMVDHEKAVSKN
MEEMTSVYKSVIQYRISVLSSEEKQIEETKSQFQMPETSMH* 0

>CRY1C_nemVec Nematostella vectensis (anemone) XM_001630979
MVNSVHWFRKGLRLHDNEPLRRAIEGSDTFRGIFFLDKAAVKNAKVSPNGWRFLIESLRDLDQSLQKYNSRLFIIQGQPIDVFPKLIKQWNISKLTFEYD
SEPFPRQRDLAVKRIAEKAGVDVIVCSSHTLYDIECIEQILEMNEGKPPVLFKDFEAIVRKLGPPENPVESITRKSFMNCICPITSTHSEKFGVPSLAEL
GIKPADVTCGDMWVGGEREALNRLGILEDKILGSNSSKNCDGSSVLFPSRTQLSPYLRFGCLSPKLYYKKLTGAYVKMQFSPPPMSLYRQLIWREFFFTL
ASKNPNMDQVNDNPLCIQISWEENKDHFLCWKQGNTGFPWIDAIMRQLQKEGWIHHLARLSVGCFLTRGCLWISWEEGLRAFEELQLDAEWSMNSGSWLW
LSCSAFFHGQIPWFCPVEVGKKLDPSGSYIRKYVPELRSMPLKYLYEPWTAPDDIQRAAMCVIGEDYPHPIVDHIEQRKACLQRLKTVCRHIQTTSFA* 0

>CRY1D_nemVec Nematostella vectensis (anemone) XM_001632799
MKERILFSSDCPSLGISSMHWFRKDLRLHDNPALLESFKNCQAFYGVYFLDPASVQRSNLSPNRWWFLLESLRDLDYNLRSLGSRLLVVRGQPVQEMPKL
LDQWNIKRLTLEYDSEPPAKQRDAVVTHLAKNLGVEVIQRVSHTLYDVETVLETNDGKLPMTFDEMAKTAEQLGPPCPPCQTVDKTVFGACLTPVGPDHA
DKYGVPLLSEFGMKELKEATAKKYWTGGEPEALRRLSAALKKCAENDFEERGWTIDEMFSNDAHLSPYMRFGCLSPRLYYQQLALTYMKEKKSIPPATLF
TGLVRRELFLHVASHNADLDKMLDNPLSVQFPWEENKEGLERWKEGKTGFPWIDAIMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLD
AEWSLNASNWLWLSCSSYVHGAVPWYCPVEVGKKVDPTGDYIKRYVPEVRGLPSEYVCEPWNAPLSVQKACRCVVGEDYPSPIVDHMEQRMICVQRMQQLSIDLGAKGERVTS* 0

>CRY1E_nemVec Nematostella vectensis (anemone) XM_001632800
GCTSVHWFRKDLRLHDNPSLLASLDNCSTFFPIYVLDMESARASKISANRWNFLCECLEALDRQLRVLGSRLFVIRGRAIDVLPRLFHEWSVNRLTFERE
SEPAGRQRDTVIQMLAENANVQLLQHNAHLLYDTDEVLETNDGKLPMTFDEMAKTAEQLGPPCPPCQTVDKTVFGACITPVGLDHAEKYGVPQLSDFGGK
ELGRATAKLFWKGGELEAMRRLNLALQKKKFIKPPLSADTLLASDRALSPYMRFGCLSPCYILDRLTTEYQRTMGSKPPETLYTNLLWREFFFATASTNP
DHHRMMGNPLALQIPWEQHPEALSLWKQGKTGFPWIDAIMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNAGNWLWLSCSS
YVHGAVPWYCPVEVGKQVDPTGEYIRTFVPELRRLPTKFLHEPWKAPSSVQREAGCIVGKDYPQPMVNHLERRVVCVQKMQNFTQTLALLNG* 0

>CRY64_nemVec Nematostella vectensis (anemone) XP_001636303 ABAV01006592 last exon uncertain
0 MASKKTHQTVHWFRNGLRLHDNPALKEAFETSQTVRPLYVLDPDVLKNGNIGVVRWRFILESLADLDNNLKKLNSR 2
1 LFVVRGRPSEVFPKLFKEWKISKLTFEVDTTEPARKQDAEVLKIANKLGVDIEQRVSHTLYDLDR 2
1 IVNKNGGTAPLTYKKFQSIVSSLGPPAAPLPAIDKKMVAGCNTPTTANHDKIYGVPTLE EIGQEVPEESREVLYPGGETEALERLEVYMKKE 0
0 DWVCKFEKPNTAPNSIEPSTTVLSPYMTYGCLSARLFYTRLAEIYAK 0
0 KKKHSQPPVSLHGQLLWREFFTTAAYKTPNFNKMVGNSLCLQVPWDQNDEYLAAWAE 0
0 ARTGYPYIDAIMTQLRREGWVHHLARHSVACFLTRGDLWISWEEGLK 0
0 VFERLLIDHDWNLNAGNWMWLSASSFFHAYFRVYSPVAFGKKTDPNGDYIR 2
1 KYIPKLSRYPPKYIYEPWNAPLAVQEKAGCVIGRDYPCPIVDHNKVVTRNMSRMKEARSLKYGKTDMGVDKRE 1
2 EASTPSKRKSKTTTDKPAKKTKKITDFLADSSE* 0

>CRY2_ampQue Amphimedon queenslandica (sponge) XM_003386521
MDSYSNGFYEEEERTLTVFNNVDGASEEEQDSFFDSYSASASSSPSSLCSSNWHSERLPVSLHWFRSFSLRLHDNSALMASLLRPQTQFRAVFVLDPWFT
ETDKKFGANRLKFLLECLHDLSNQLEALGLKLYVAQGQTTAVLAGLCQEWGVTHLSYQKSQEPRSKVEERTISEMASMMNIEVEEFHNHTLYSPTELIKL
NEGKPILTFKDFRTLLSKLKPPAVPISSPSTKQKYNEDNIPMFKVQTFQIPSLASLGCYDVELGTGPWVGGETEALKRLDNYCTVRSKPFDNFLDCLFDK
TSLSPYVRFGCLSVRHFWHYVRQLASTDKSKMTLVQEVSSKLLQREFYFLVSSQVPNFDTDTQNPICIQLPWEFDADGLRRWRSGMTGYPWIDAAIRQML
KEGWIHNLLRESIATFLTRGDLWISWLKGAESFEMYMLDYEPSVSCGCWMKSSSTAFITGTIEHYNPISYGQQLDPNGDYIRHFVPEVKNLPKEYIFCPW
MAPIEVQREAGCIVGTDYPHPVVDHMTAGVICMERLKSFMQSLSSHQTNP* 0

>CRY_ampQue Amphimedon queenslandica (sponge) XM_003386534
METLQGSYDGGGSGFFFPPAGSPRSAMSRHQYPAPEKGHLPSQPPTVLHWFRLDSLRLSDNPAFHHAVSSGKRLKAVVILDPWFNSNNKSGPSANVWRFL
LESLHDLDSRLQKRPYNTRLNIYLGQPTVVLSALFHKWNVSELTFQASQTSLESKKHDELIKFAADSQNVKTTSFYSHTLYNPEDILRANNGRFPHSYKE
LRRLLPLVGRPREPFPEPDPVLVLLRQNSPEDQDLEEPENRIPSLQDLGFGLEETLYTNSWVGGETEGLSRLSNFCSRRSTQPNEPITWLISKDSLGPYI
RFGCLSVRQLFSQLRQYASTSSKGQVLFAELTKNLLMREFAYMVGLTVPKFDTMKDNPLCIQLPWEENERFFYAWKEGRTGYPWIDAAMRQIVRDGWSHY
STRQSIAVFLTRGYLWISWEKGLEFFQEHMLDFELPVSTVCWMQSSCSGFFVDFIESYDPCYIGKQMDSDGHFIKLYVPELQDFPSDYIHTPWLAPLHVQ
QQANCIIGKDYPKPLVDLCSQGELCCQRVRSILTALRELYGDNP* 0

>CRY_subDom Suberites domuncula (sponge) FN421335
MHCNYPLATQTTFQGQSIPDTTVHWFRLDALRLHDNPAFVDAVKTDGNFKAVFIIDPWFNANYNNGGPQVNVWRFLLEALHDLDSRLQKKPYCARLNVLY
GQPTMILPELYKKWNVKKITFQASQVSSESMKHDGIIKILSEQQNVQAVSYFSHTLYDPANVIALNNGRVPLSYKEFRRLMPLMGKPASPIPEPHPMSLC
MKAPPSELVPEPEGKIPKLQDLGLSDEFALYTNSWVGGETEALSRLSSFCSRRAAIPNEPVHWLMSKDTLSPYIKFGCLSVRQLFSQLLQFASTSSKGQE
LFELLTKNLLLREFAFLVGSSSPKFDVMEGNSLCIQLPWESNNVFIQAFRNGQTGYPWIDAIIRQIRQDGWAHFLARQSIAVFLTRGYLWISWVLGKEFF
QEFMIDFELPVSSVCWMQSSCSGFFCTQIESYDPCLVGKQIDTDGHYIKTYVPELKDFPSEYVHQPWKCSSLHTEASWLCDREQYPKPIIDVCKQGELCCKRVQSIMKALADVYGVE* 0

>CRY_aphVas Aphrocallistes vastus (sponge) PubMed:14499587
MESLSITEFSPSAPSPISSSSSPDEETDRDIVAKDIEQDVEPQGKVLLHIFNNRHLRLKDNTALYQAMAQNPDKFYAVYIFDGFDSKPVAPVRWQFLIDC
LEDLKEQLNGFGLELYCFRGETIDVLATLVQAWKVKLLSINMDPDVNFTFFNEKIVKMCTINAVQLYNDMDSHRLLYLPPKYKSAIPMSKFRVLLAEAIT
AKQNNLESEAKIQDITPPLNPEQLSDLGNKPRLDSPLPSEIPKLNALFTEEEIAKLNFIFQGGERRTEDYLNEYREARLRDVSGDEDASPIAAKAMGISP
HLRFGCITPRHLFNFLVKTIKDANYSRIKINKVLAGIMARDFALQVSQLQTIPERIISLNKICLPIPWDKNNNEIVEKLTDAQTGFPFFDAAITQLKTEG
YVINEVSEALATFVTNSLLWVSWEEGQNFFSQHLICFDLAMSTHSWLEASGSTMVTGRQKSYQDPLLFVSKKLDPNGEYIKRYLPKFINFPIEFIHKPGN
ASLEAQQAANCVIDIDYPKPLFEYECRNGICCKRLRVFMEVVDSAAKATKLPHVIENCSGKFP* 0

>CRY1A_araTha Arabidopsis thaliana (cress) NM_116961 AFNC01018176 aka:CRY1,HY4 PDB:2VTB
0 MSGSVSGCGSGGCS 2
1 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLY 1
2 DPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIIS 1
2 GDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYS
RYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGW
QYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQLEAASRA
AIENGSEEGLGDSAEVEEAPIEFPRDITMEETEPTRLNPNRRYEDQMVPSITSSLIRPEEDEESSLNLRNSVGDSRAEVPRNMVNTNQAQQRRAEPASNQ
VTAMIPEFNIRIVAESTEDSTAESSSSGRRERSGGIVPEWSPGYSEQFPSEENGIGGGSTTSSYLQNHHEILNWRRLSQTG* 0

>CRY1B_araTha Arabidopsis thaliana (cress) CRY2 PHH1 NM_100320 AFNB01000167 no antennal chromophore
0 MKMDKKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLY 1
2 DPVSLVRDHTVKEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITA 1
2 AAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYI
CFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPA 0
0 LQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAISRTREAQIMIGAAPDEIVADSFEALGAN
TIKEPGLCPSVSSNDQQVPSAVRYNGSKRVKPEEEEERDMKKSRGFDERELFSTAESSSSSSVFFVSQSCSLASEGKNLEGIQDSSDQITTSLGKNGCK* 0

>CRY1C_araTha Arabidopsis thaliana (cress) NM_001035626 AFNC01013058 aka:UVR3,CRY3 PDB:3FY4
0 MQRFCVCSPSSYRLNPITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQE 0
0 WKVKRLCFEYDTDPYYQALDVKVK 0
0 DYASSTGVEVFSPVSHTLFNPAHIIEK 0
0 NGGKPPLSYQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQ 0
0 ADWTPFRGGESEALKRLTKSISDK 2
1 AWVANFEKPKGDPSAFLKPATTVMSPYLK 0
0 FGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQ 0
0 LLWREFFYTTAFGTPNFDKMKGNRICKQ 0
0 IPWNEDHAMLAAWRDGKTGYPWIDAIMVQ 0
0 LLKWGWMHHLARHCVACFLTRGDL 0
0 FIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQALSPFCFSF* 0

>CRY_phaTri Phaeodactylum tricornutum (diatom) XM_002180059 PMID:19424294
MAKSEEKKHDVAIHWFRNGLRFHDNPCLLDACQKSESLLPIYVVDPEFPFAQTAGCRAGTIRANFLLESINEVDEKLRKMGSQLVVVLGKSHEVLPEIVATT
QAKALFYEQEAAAPVREQDAETIQAIKNRLKRDGKNYECKFEAYATHTLHPMERYLAQCKDHTAPSTYGSFTKIFNKMSVAKEVNEVKEVPSLPNKSVKLLEKSFAEALRMPTLKD
LGYAAAADDMKNSGKGGYAFAGGENAAIELLAKNMARSQWVATFEKPKTSPNDATRPSTTALSPYVKHGCISPRRFYHELSKVYSKYNSKETSKPPVSLHGQLMWRDFNYLVGYST
PNFDKMIDNPIARQIPWDDDPDLLLAWKMSKTGYPYIDAIMTQLRETGWIHHLARHSVACFLTRGDLWQSWEDGATVFEEYLIDADWSINNFNWQWLSCTAHFYQYFRCYSPIAFG
KKTDPNGDYIRKWLPQFKDMPAKYIYEPWEAPIELQKKVGVIVGENYPHPIVDHKLVSKNNMSRMKEAYDAQKNREPMPANESHSSGLNRDTSPKRQRRN* 0

>CRY_thaPse Thalassiosira pseudonana (diatom) XM_002291108 
MSAALKSTDQDTVVAMHWFRKGLRVHDNPALLHALAITKDTSGPIYPVYIVDPNCYQLLKCSVLRARFLLECISDLDKSLRERGSRLYVATGDPLEVLPELW
KEWGVTHVTHEADETGEPYAVARDEGVRSVAKKNGVQVMEFRSETLRPLGNVPGGYVANVGGAVNSVPSTMSSFQGLLGRIDGGNIPLPLDAPTKEEFPQLSDDDDSNKYLPLEHP
SDCEDASLTGIVKGGETLALAQLQSTVTARPDWTASFEKPKTSCTEVSTPSTTVLSPYLSLGCLSPRKAWHAVADANRKASSKVNKTKPPVSLHGQLLWRDFNNLIAHSANAQSPG
SWGRMQDNPYCRNVPWSSDPKLLKAWKDGKTGFPWIDACMAQLRTEGWIHHLGRHAVACFLTRGDLWQSWEMGADHFEGELLDADYALNNFNWLWLSCSGFFYQYFRCYSPVAFQK
KNDVNGNYIRKWVPELAGLPAKYIYEPWKAPSSVLNAAGIKLGDNYPNPIVDHAFVSKENMSKMSLAYDMHKDGEKQEGSKKAAATSSKNKSSDPAKKKQKQMTLK* 0

The 4Fe-4S photolyases and primases

A small sample of the available sequences are shown; these suffice as GenBank probes. PFES stands for photolyase with a 4Fe-4S redox cluster. These are entirely prokaryotic. 

>PFES_agrTum Agrobacterium tumefaciens (bacteria) NP_355900 aka: PhrB
MSQLVLILGDQLSPSIAALDGVDKKQDTIVLCEVMAEASYVGHHKKKIAFIFSAMRHFAEELRGEGYRVRYTRIDDADNAGSFTGEVKRAIDDLTPSRIC
VTEPGEWRVRSEMDGFAGAFGIQVDIRSDRRFLSSHGEFRNWAAGRKSLTMEYFYREMRRKTGLLMNGEQPVGGRWNFDAENRQPARPDLLRPKHPVFAP
DKITKEVIDTVERLFPDNFGKLENFGFAVTRTDAERALSAFIDDFLCNFGATQDAMLQDDPNLNHSLLSFYINCGLLDALDVCKAAERAYHEGGAPLNAV
EGFIRQIIGWREYMRGIYWLAGPDYVDSNFFENDRSLPVFYWTGKTHMNCMAKVITETIENAYAHHIQRLMITGNFALLAGIDPKAVHRWYLEVYADAYE
WVELPNVIGMSQFADGGFLGTKPYAASGNYINRMSDYCDCRYDPKERLGDNACPFNALYWDFLARNREKLKSNHRLAQPYATWARMSEDVRHDLRAKAAAFLRKLD* 0

>PFES_rhoSph Rhodobacter sphaeroides (bacteria) CP000144 PDB|3ZXS PMID:22290493 6,7-dimethyl-8-ribityl-lumazine antenna aka CryPro 4Fe-4S photolyase
MRGSHHHHHHGIRMLTRLILVLGDQLSDDLPALRAADPAADLVVMAEVMEEGTYVPHHPQKIALILAAMRKFARRLQERGFRVAYSRLDDPDTGPSIGAE
LLRRAAETGAREAVATRPGDWRLIEALEAMPLPVRFLPDDRFLCPADEFARWTEGRKQLRMEWFYREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPDL
LRPRPLRFEPDAEVRAVLDLVEARFPRHFGRLRPFHWATDRAEALRALDHFIRESLPRFGDEQDAMLADDPFLSHALLSSSMNLGLLGPMEVCRRAETEW
REGRAPLNAVEGFIRQILGWREYVRGIWTLSGPDYIRSNGLGHSAALPPLYWGKPTRMACLSAAVAQTRDLAYAHHIQRLMVTGNFALLAGVDPAEVHEW
YLSVYIDALEWVEAPNTIGMSQFADHGLLGSKPYVSSGAYIDRMSDYCRGCAYAVKDRTGPRACPFNLLYWHFLNRHRARFERNPRMVQMYRTWDRMEET
HRARVLTEAEAFLGRLHAGEPV* 0

>PFES_metMah Methanohalophilus mahii (Euryarchaeota) CP001994 4Fe-4S photolyase
MRHYAEKLRNRGADITYIKTAELEKSLSRWIKKKGIDELNIAEPANITLKEYLGKLNIDCKIVFVDNKQFIWSIPEFNTWASSRKNLIMEDFYRTGRKNSEI
LLEKDGKPSGGKWNLDRENRKLPPKNGFQKKPPQHIKFSPDKITKEIIAEVERSEYPTYGKGKDFNLAVTHEDAQKALDFFIEEKLSNFGPYQDIMLTGDNVLWHSILSPYLNLGL
LHPLNVIKKAELAYYQKNLPLNSIEGFIRQILGWREYMHCIYKYTGDKYLKSNWFDHERELPDIYWYPERTSMNCMASVIEEVLNTGYAHHIQRLMILSNFALLAEVNPAKVKNWF
HAAFIDAYDWVMQPNVIGMGQFADGGILATKPYISSANYINKMSDYCQNCTYNHNHRTGEDACPFNYLYWAFLHKNNEKLRDIGRMKLILKNLDRINKKELKQIMTHADDFLKSLK* 0

>PFES_natPha Natronomonas pharaonis (Euryarchaeota) CR936257 4Fe-4S photolyase
MTVLVLGDCLTEFGPLASDARSTDERVLCIEARAFARRKPYHPHKLTLVFSAMRHFRDRLREAGYTVDYRRVETFAEGLDAHFAAHPEDHIVTVRRTAHGAT
DRLQRLVANRGGTVEFVADPRFHCSREEFDAWADGDPPYRHESFYRHMRRETGYLMDGDEPVGGEWNFDDENREFPGPEYVPPEPPQFEPDETTREVREWVDATFGEDGYDDAPYG
GAWADPEPFSWPVTREGALQALEAFIEERLPTFGPYQDAMLGDEWAMNHALLSSSLNLGLLSPSEVIEAALAAFEEGSVSIASVEGFLRQVLGWREFVRHAYRRTPGMAAANQLGA
AEPLPEFFWTGDTDMACVADAVDGVRTRGYAHHIERLMVLSNFATLYGVEPSRLNEWFHAAFVDAYHWVTTPNVVGMGTFGTDTLSTKPYVASANYIDRMSDHCSGCPYYKTKTTG
DGACPFNALYWDFLGRNESQLRSNHRMGLVYSHYDDKSDGEREAIADRAETLRQRARNGTL* 0

>PRIM2_homSap Homo sapiens (human) primase large subunit 4Fe-4S pdb|3L9Q,3Q36
MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF
IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV
QSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRT
DYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRILNGGKDIKKEPIQPETPQPKPSVQKT*
KDASSALASLNSSLEMDMEGLEDYFSEDS* 0

>PRIM2_sacCer Saccharomyces cerevisiae (yeast) P20457 aka: PRI2_YEAST primase large subunit PDB|3LGB
MFRQSKRRIASRKNFSSYDDIVKSELDVGNTNAANQIILSSSSSEEEKKLYARLYESKLSFYDLPPQGEITLEQFEIWAIDRLKILLEIESCLSRNKSIK
EIETIIKPQFQKLLPFNTESLEDRKKDYYSHFILRLCFCRSKELREKFVRAETFLFKIRFNMLTSTDQTKFVQSLDLPLLQFISNEEKAELSHQLYQTVS
ASLQFQLNLNEEHQRKQYFQQEKFIKLPFENVIELVGNRLVFLKDGYAYLPQFQQLNLLSNEFASKLNQELIKTYQYLPRLNEDDRLLPILNHLSSGYTI
ADFNQQKANQFSENVDDEINAQSVWSEEISSNYPLCIKNLMEGLKKNHHLRYYGRQQLSLFLKGIGLSADEALKFWSEAFTRNGNMTMEKFNKEYRYSFR
HNYGLEGNRINYKPWDCHTILSKPRPGRGDYHGCPFRDWSHERLSAELRSMKLTQAQIISVLDSCQKGEYTIACTKVFEMTHNSASADLEIGEQTHIAHP
NLYFERSRQLQKKQQKLEKEKLFNNGNH* 0

Alignment-ready sequences

The sequence sets above can be aligned as-is but for most purpose -- especially comparing one orthology class to another -- it is preferable to trim off non-conserved variable length regions at the N- and C-termini and also to groom sequences by removing insertions limited to a single species especially in outlier taxa as these create gap columns that distract from the central evolutionary story.

Some assemblies have missing exons, so when the rate of divergence is low, the exon can be infilled (in effect, predicted) from the closest related species. For example, zebra finch is missing the first exon of CPD but that is available from other songbirds (which are more suitable than chicken or duck). While loses some natural variation, it improves products such as logos and overlays on 3D structures.

However it is counterproductive to infill sequences with multiple missing exons. These are included in the sequence compilation primarily to establish the presence/absence of a gene in the given phylogenetic position. For narrowly targeted purposes, their exons can be informative. However the very fact of poor coverage speaks to the quality of sequencing project, meaning observed variation is not necessarily reliable. Thus the primary use is in confirming change (or not) implied by more complete sequences.

Finally, pseudogenes are not appropriate for groomed alignment inclusion because they introduce spurious amino acid variation not informative to structure or function. The issue here is not older pseudogenes riddled with frameshifts and internal stop codons, but rather newer pseudogenes that have not yet accrued grossly inappropriate features.

These newer pseudogenes can be recognized because their pattern of amino acid substitution does not respect the pattern of conservation within the protein -- a residue strictly invariant for a billion years is just as likely to be substituted as an inconsequential loop residue. Operationally, the 'dot product' of observed substitutions with the conservation logo will score too high (ie outside the cluster defined by the other sequences). However very recent pseudogenes cannot be detected by any method. These contribute an effect similar to residual sequence error in non-pseudogenes.

CPD

The 33 CPD sequences have quite a ragged amino terminus but are otherwise quite orderly in their conservation. The groomed and gapped sequence set from initial to final regions of conservation runs to 473 amino acids. The sequences are in phylogenetic order relative to marsupial.

The first alignment is conventional (full sequences for all species), allowing regions of interest to be located by web browser text search. For example, Oryza sativa (rice) has a determined CPD structure (3UMV) marked up in its GenBank entry for alpha helices and beta sheets. Methanosarcina mazei (euryarchaeota) also has a relevant structure 2XRY that is still 49% identical to frog that could be added for comparative purposes.

The second alignment, made with Multalin2 is a difference alignment set to display an amino acid position (alignment column) only when 77% or more of the sequences agree. The figure 77% causes 50% of the total amino acids display. This is an important evolutionary conservation parameter that differs for each ortholog class of cryptochrome and photolyase (though comparisons are inappropriate unless match for phylogenetic depth).

CPD is remarkably well conserved. That can be seen by requiring a conservation level of 96% (which allows 1 sequence of the 33 to vary, allowing some degree of data error). Of the 473 residues, 145 (30.5%) are invariant. These residues are key to mapping conservation onto 3D location and to reliable cross-alignment of CPD to other diverged homologs. These ultra-conserved residues are shown below for a theran mammal: 

CPD_monDom YWM.RD.R..DNWA.......A.....PL...F......L....R...F...GL.............F..L.G....................D..PL................-.....QVDAHN.VP.W..
S.K.E..A.T.R.K........L..FP................-.W.................W...G.......L..F...R.......RN.P.....S.LSP..H.G....QR..L............V....EE...RREL
..NFC.Y...YD...G...WA...L..H..D.R...Y....LE...T.D.LWN..Q......GK.HGF.RMYWAKKILEWT..P...L.....LN.....DG.DP.GYVGC.WS..G.HD.GW.ER..FGK.R.MNY.GC.RKF
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