Medical Sequencing Data
From genomewiki
Medical Sequencing Data
Some combination of phenotype and genotype ... Details unknown. Worthwhile to design ?
Major Types of information
- Subjects
- Anonymous individuals
- Family history
- Age
- Gender
- Ethnicity
- Pools of people
- Anonymous individuals
- Environmental data
- Location (zip code would be great)
- Medications they are taking
- Exercise, nutrition ...
- Genotype info
- Microarray based
- SNPs
- Haplotype blocks
- Copy number polymorphism
- Sequence based
- Random reads
- PCR products
- larger clones
- single haplotype vs. diploid
- Microarray based
- Phenotype
- Disease presence/absence or severity
- ADR - Adverse Drug Reaction
- Single physiological measure
- Enzyme activity, measure of amount of substance
- Parallel Measures
- Microarray measurements, etc...
Some Other Database Entities
- GenotypeTest - records what regions of genome probed.
- Study
- External URL
- Publications
- Contacts
- A group of subjects
- A set of phenotype and genotype tests