Hg38 7-way conservation alignment
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see also
- Human 7-way Hg38 7-way Genome size statistics
- Human 7-way Hg38 7-way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on hg38 |
% of hg38 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | hg38 | Homo sapiens | Human | Dec. 2013 (GRCh38/hg38) | GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) | 2014-01-10 | 2013-12-25 | N/A | N/A |
| 02 | panTro4 | Pan troglodytes | Chimp | Feb. 2011 (CSAC 2.1.4/panTro4) | CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) | 2012-01-09 | 2012-01-09 | 2014-05-27 | 93.112% |
| 03 | rheMac3 | Macaca mulatta | Rhesus | Oct. 2010 (BGI CR_1.0/rheMac3) | Beijing Genomics Institute, Shenzhen (GCA_000230795.1) | 2011-12-30 | 2012-01-03 | 2014-01-28 | 79.729% |
| 04 | canFam3 | Canis lupus familiaris | Dog | Sep. 2011 (Broad CanFam3.1/canFam3) | Broad CanFam3.1 (GCA_000002285.2) | 2012-01-05 | 2012-01-06 | 2014-01-27 | 49.978% |
| 05 | mm10 | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) | 2012-02-06 | 2012-02-07 | 2014-01-25 | 31.629% |
| 06 | rn5 | Rattus norvegicus | Rat | Mar. 2012 (RGSC 5.0/rn5) | RGSC Rnor_5.0 (GCA_000001895.3) | 2012-03-21 | 2012-03-21 | 2014-03-01 | 30.788% |
| 07 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2014-05-29 | 14.370% |
