DanRer10 12-way conservation lastz parameters
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See Also
- Zebrafish 12-way DanRer10 12-way Genome size statistics
- Zebrafish 12-way DanRer10 12-way conservation alignment
- all other UCSC Multiple Alignments
| The default scoring matrix is: | The HoxD55 scoring matrix is: | The human-chimp.v2 scoring matrix is: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
O=400 E=30 |
O=400 E=30 |
O=600 E=150 |
do not edit, automatically generated table
| query | abridged repeats(no) |
M(0) | K(3000) | L(3000) | Q | Y(9400) | program run | E(30) | H(0) | O(400) | T(1) | chain table date |
% of danRer10 matched (chainLink table) |
% of query matched (chainLinkDanRer10) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Stickleback gasAcu1 | no | 254 | 3000 | 3000 | HoxD55.q | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2017-02-10 | 9.814% | 27.557% |
| Spotted gar lepOcu1 | no | 254 | 3000 | 3000 | HoxD55.q | 9400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2020-02-25 | 8.409% | 11.294% |
| Tetraodon tetNig2 | no | 254 | 3000 | 3000 | HoxD55.q | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2017-02-09 | 6.063% | 23.344% |
| Fugu fr3 | no | 254 | 3000 | 3000 | HoxD55.q | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2017-02-09 | 7.080% | 22.699% |
| Medaka oryLat2 | no | 254 | 3000 | 3000 | HoxD55.q | 9400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2017-02-09 | 9.640% | 17.684% |
| X. tropicalis xenTro9 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2020-02-25 | 6.731% | 7.029% |
| Chicken galGal6 | no | 254 | 2200 | 4000 | HoxD55.q | 3400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2020-02-25 | 5.871% | 6.171% |
| Elephant shark calMil1 | no | 254 | 3000 | 3000 | HoxD55.q | 9400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2020-02-25 | 5.599% | 7.088% |
| Human hg38 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.54/bin/lastz | 30 | 2000 | 400 | 1 | 2015-02-09 | 7.110% | 3.357% |
| Mouse mm10 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz-distrib-1.03.66/bin/lastz | 30 | 2000 | 400 | 1 | 2015-09-18 | 5.228% | 2.769% |
| Coelacanth latCha1 | no | 254 | 3000 | 3000 | HoxD55.q | 9400 | lastz-distrib-1.04.00/bin/lastz | 30 | 2000 | 400 | 1 | 2020-02-25 | 6.319% | 4.504% |
