Main Page
Welcome to the UCSC Genome Browser Wiki Site
This wiki site provides a forum for sharing information about the UCSC Genome Browser, a Web-based tool that provides a fast, easy way to display a specific region of a genome assembly, along with dozens of aligned annotation tracks. The browser features data from a large collection of vertebrates, model organisms, and selected invertebrate genomes.
In addition to offering general information about the browser on this site, we'd also like to share tips and tricks for more advanced users, information for mirror sites and developers, and discussions of the underlying data sets and experimental protocols. Please feel free to use this wiki to organize your collaborations and exchange ideas about Genome Browser usage. Our intent is to develop a collection of interesting projects and a store of information useful to a variety of audiences.
Before editing this wiki, please create an account by clicking on the "Log in/create account" link at the top of the page. For information about editing wiki pages, see also the Help:Contents link for specific information about this wiki, or for a more extensive discussion of page editing, the Wikipedia guidelines on How to edit a page. For navigation and organization assistance within this Wiki, use the Categories link in the navigation panel on the left.
Using genome.ucsc.edu
- Learn more about the browser
- How to create a custom track]
- Minimal browser install
- Maintaining Browser mirrors
- Installing Browser Mirror
Genome Biology
- Genome Analysis - Phylogenetic origin of human SGSH introns Ancestral_introns:_SGSH
Browser Development
- Automation of genome assembly database builds
- Custom track database implementation
- Track metadata handling - discussion of design for expanded search/display, especially for ENCODE
- Known genes III - design and discussion of next generation known genes track
- Medical sequencing data - discussion for design of next generation medical sequence data organization
- Implementation_Notes describe some of the down-and-dirty details that QA engineers often ask developers about... or that they get an earful about when they ask simple questions!
Administrative Information
You must log in and confirm your email address to edit pages. To create an account, click the "Log in/create account" link at the top of the page, then confirm your email address via the "Preferences" link. Please note: all content you create in genomewiki is public content and cannot be removed since it is always in the history of a page even if it is deleted after creation.
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