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| CBSE has requested that we standardise on the PubMed citation format throughout the genome browser.
| | This page is no longer maintained. |
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| Here is a link to the PubMed Journal Article [http://www.nlm.nih.gov/bsd/policy/cit_format.html Citation Format]. If you can't find an existing example on this page of how to create a citation, just look up the article in PubMed, then cut/paste the entire citation.
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| PubMed, in turn, uses the ANSI/NISO Z39.29-2005 Bibliographic References standard [http://www.niso.org/standards/resources/Z39-29-2005.pdf pdf] as the basis for their format standards.
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| Here is a sample of the approved style:
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| Bejerano G, Lowe CB, Ahituv N, King B, Siepel A, Salama SR, Rubin EM, Kent WJ, Haussler D. [http://www.nature.com/nature/journal/v441/n7089/abs/nature04696.html A distal enhancer and an ultraconserved exon are derived from a novel retroposon]. ''Nature''. 2006 May 4;441(7089):87-90.
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| Chapter in a book:
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| Meltzer PS, Kallioniemi A, Trent JM. Chromosome alterations in human solid tumors. In: Vogelstein B, Kinzler KW, editors. The genetic basis of human cancer. New York: McGraw-Hill; 2002. p. 93-113.
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| The [http://genome.ucsc.edu/goldenPath/pubs.html Publications page] in the genome browser has been updated to reflect this style. '''Please follow this style for all future citations used in the browser.'''
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| '''Details:'''
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| * If there are more than ten authors, list only the first 10 then use ''et al''.
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| ** Nusbaum C, Zody MC, Borowsky ML, Kamal M, Kodira CD, Taylor TD, Whittaker CA, Chang JL, Cuomo CA, Dewar K ''et al''. [http://www.nature.com/nature/journal/v437/n7058/abs/nature03983.html DNA sequence and analysis of human chromosome 18]. ''Nature''. 2005 Sep 22;437(7058):551-5.
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| * If the journal name is abbreviated, do not include periods within the abbreviated name (but do include a period after the journal name, as always).
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| ** Drake JA, Bird C, Nemesh J, Thomas DJ, Newton-Cheh C, Reymond A, Excoffier L, Attar H, Antonarakis SE, Dermitzakis ET ''et al''. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16380714&itool=iconabstr&query_hl=20&itool=pubmed_docsum Conserved noncoding sequences are selectively constrained and not mutation cold spots]. ''Nat Genet.'' 2006 Feb;38(2):223-7.
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| * If you have a choice, point to an abstract version of the paper rather than the entire full paper. (Not all users have access to full-text versions without paying a fee.)
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| * List citations in alphabetical order.
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| '''To cite a paper within text:'''
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| Citations should be like this: (Lastname, et al. YEAR). An example is: (Kent, et al. 2010). Obviously, if there is only one author, do not include the "et al."
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| [[Category:Browser Development]][[Category:Browser QA]]
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