Ensembl QA: Difference between revisions
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Marygoldman (talk | contribs) (Adding point about looking at hgFixed, as well as numbering) |
(Removing Category:Browser_QA (it's now in Category:Browser QA tracks)) |
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*To get the links to go to the correct place at Ensembl, you will have to check for the appropriate rows in trackVersion table in hgFixed database | *To get the links to go to the correct place at Ensembl, you will have to check for the appropriate rows in trackVersion table in hgFixed database | ||
[[Category:Browser QA tracks]] | |||
Revision as of 03:11, 23 July 2010
There are periodic updates to all Ensembl Genes tracks in all dbs.
- A good script to run that checks many things is checkEnsembl.sh.
- All Ensembl builds are documented in the single file:
src/hg/makeDb/doc/makeEnsembl.txt
- You can find all ensembl gene builds in:
/hive/data/genomes/<db>/bed/ensGene.NN/
- where NN is the ensembl version number.
- To get the links to go to the correct place at Ensembl, you will have to check for the appropriate rows in trackVersion table in hgFixed database
