Ensembl QA: Difference between revisions

From genomewiki
Jump to navigationJump to search
(removed reference to script that isn't useful. Tidied up language.)
(Replacing page with 'This page is no longer maintained.')
 
(4 intermediate revisions by one other user not shown)
Line 1: Line 1:
There are periodic updates to all Ensembl Genes tracks in all dbs.
This page is no longer maintained.
 
*Run qaEnsGenes.csh
**Run it '''before''' you push to beta, as it compares dev to beta. You'll lose that comparison if you push too soon.
 
*All Ensembl builds are documented in the single file:
    src/hg/makeDb/doc/makeEnsembl.txt
 
*You can find all ensembl gene builds in:
    /hive/data/genomes/<db>/bed/ensGene.NN/
:where NN is the ensembl version number.
 
*To get the links to go to the correct place at Ensembl, you will have to check for the appropriate rows in trackVersion table in hgFixed database
**Basically, lines from trackVersion need to be copied over into the hgFixed database on beta and the RR. Do this as you push the tables along.
**You can also manipulate the dates so the current version says 'current'. However, that does not seem to be a rule.
 
 
[[Category:Browser QA tracks]][[Category:Browser QA]]

Latest revision as of 19:32, 10 March 2011

This page is no longer maintained.