Frequently asked mailing list questions: Difference between revisions

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<OL>
This page is intended to be a collection of previously answered questions on the Genome and Genome-Mirror mailing lists that are useful for answering repeat questions.
<LI>''I have a list of Gene Symbols and I would like to get corresponding sequences for them.''
 
==Genome==
''I have a list of Gene Symbols and I would like to get corresponding sequences for them.''
*[http://www.soe.ucsc.edu/pipermail/genome/2007-April/013248.html http://www.soe.ucsc.edu/pipermail/genome/2007-April/013248.html]
*[http://www.soe.ucsc.edu/pipermail/genome/2007-April/013248.html http://www.soe.ucsc.edu/pipermail/genome/2007-April/013248.html]


<LI>''Help me create a Custom Track''
''Help me create a Custom Track''
*''...with shades of grey.''
*''...with shades of grey.''
::[http://www.soe.ucsc.edu/pipermail/genome/2007-April/013185.html http://www.soe.ucsc.edu/pipermail/genome/2007-April/013185.html]
**[http://www.soe.ucsc.edu/pipermail/genome/2007-April/013185.html http://www.soe.ucsc.edu/pipermail/genome/2007-April/013185.html]
*''...with''
*''...with''
**[http://www.cse.ucsc.edu/pipermail/genome/2006-July/011100.html http://www.cse.ucsc.edu/pipermail/genome/2006-July/011100.html]
**[http://www.cse.ucsc.edu/pipermail/genome/2006-September/011672.html http://www.cse.ucsc.edu/pipermail/genome/2006-September/011672.html]
**[http://www.cse.ucsc.edu/pipermail/genome/2006-September/011712.html http://www.cse.ucsc.edu/pipermail/genome/2006-September/011712.html]
**[http://www.cse.ucsc.edu/pipermail/genome/2006-December/012312.html http://www.cse.ucsc.edu/pipermail/genome/2006-December/012312.html]
**[http://www.cse.ucsc.edu/pipermail/genome/2006-February/009847.html http://www.cse.ucsc.edu/pipermail/genome/2006-February/009847.html]
**[http://www.cse.ucsc.edu/pipermail/genome/2005-October/008822.html http://www.cse.ucsc.edu/pipermail/genome/2005-October/008822.html]


<LI>''Help me with microarray data.''
''How do I find non-protein-coding genes?''
*[http://www.cse.ucsc.edu/pipermail/genome/2006-July/011100.html http://www.cse.ucsc.edu/pipermail/genome/2006-July/011100.html]
*[http://www.soe.ucsc.edu/pipermail/genome/2007-October/014924.html tRNA genes and not coding regions for tRNA related proteins?]
*[http://www.cse.ucsc.edu/pipermail/genome/2006-September/011672.html http://www.cse.ucsc.edu/pipermail/genome/2006-September/011672.html]
*[http://www.cse.ucsc.edu/pipermail/genome/2006-September/011712.html http://www.cse.ucsc.edu/pipermail/genome/2006-September/011712.html]
*[http://www.cse.ucsc.edu/pipermail/genome/2006-December/012312.html http://www.cse.ucsc.edu/pipermail/genome/2006-December/012312.html]
*[http://www.cse.ucsc.edu/pipermail/genome/2006-February/009847.html http://www.cse.ucsc.edu/pipermail/genome/2006-February/009847.html]
*[http://www.cse.ucsc.edu/pipermail/genome/2005-October/008822.html http://www.cse.ucsc.edu/pipermail/genome/2005-October/008822.html]
</OL>
 
 
This page is intended to be a collection of previously answered questions on the Genome and Genome-Mirror mailing lists that are useful for answering repeat questions.
 
 
 
==Genome==
On finding non-protein-coding genes:
 
[http://www.soe.ucsc.edu/pipermail/genome/2007-October/014924.html tRNA genes and not coding regions for tRNA related proteins?]
 
 
Using Table Browser to find coords for list of identifiers:
 
[http://www.soe.ucsc.edu/pipermail/genome/2007-May/013674.html physical positions of multiple genes]


''I have a list of identifiers, how do I find the coordinates?''
*[http://www.soe.ucsc.edu/pipermail/genome/2007-May/013674.html physical positions of multiple genes]


Format of chain, chainLink and net tables:
''Format of chain, chainLink and net tables''
*[http://www.soe.ucsc.edu/pipermail/genome/2006-February/009869.html Question on net format]


[http://www.soe.ucsc.edu/pipermail/genome/2006-February/009869.html Question on net format]




Revision as of 01:01, 7 December 2007

This page is intended to be a collection of previously answered questions on the Genome and Genome-Mirror mailing lists that are useful for answering repeat questions.

Genome

I have a list of Gene Symbols and I would like to get corresponding sequences for them.

Help me create a Custom Track

How do I find non-protein-coding genes?

I have a list of identifiers, how do I find the coordinates?

Format of chain, chainLink and net tables


Genome-Mirror

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