Hg38 100-way Genome size statistics: Difference between revisions

From genomewiki
Jump to navigationJump to search
(updated)
(updated)
Line 143: Line 143:
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orycteropus_afer/OryAfe1.0/ Aardvark]</TD><TH ALIGN=CENTER>44X</TH>
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orycteropus_afer/OryAfe1.0/ Aardvark]</TD><TH ALIGN=CENTER>44X</TH>
<TH ALIGN=CENTER>7875832</TH>
<TH ALIGN=CENTER>7875832</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>36.526%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 13]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/249878/ 13]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3]</TH>
<TH ALIGN=RIGHT>7,793</TH>
<TH ALIGN=RIGHT>7,793</TH>
Line 161: Line 161:
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ceratotherium_simum/CerSimSim1.0/ White rhinoceros]</TD><TH ALIGN=CENTER>91X</TH>
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ceratotherium_simum/CerSimSim1.0/ White rhinoceros]</TD><TH ALIGN=CENTER>91X</TH>
<TH ALIGN=CENTER>26277727</TH>
<TH ALIGN=CENTER>26277727</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>53.075%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296735.1/ 15]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrAsi1 chrAsi1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000296735.1/ 15]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=chrAsi1 chrAsi1]</TH>
<TH ALIGN=RIGHT>20,500</TH>
<TH ALIGN=RIGHT>20,500</TH>
Line 170: Line 170:
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chrysochloris_asiatica/ChrAsi1.0/ Cape golden mole]</TD><TH ALIGN=CENTER>66X</TH>
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Chrysochloris_asiatica/ChrAsi1.0/ Cape golden mole]</TD><TH ALIGN=CENTER>66X</TH>
<TH ALIGN=CENTER>13470186</TH>
<TH ALIGN=CENTER>13470186</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>29.208%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000308155.1/ 16]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000308155.1/ 16]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eptFus1 eptFus1]</TH>
<TH ALIGN=RIGHT>6,788</TH>
<TH ALIGN=RIGHT>6,788</TH>
Line 179: Line 179:
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Eptesicus_fuscus/EptFus1.0/ Big brown bat]</TD><TH ALIGN=CENTER>84X</TH>
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Eptesicus_fuscus/EptFus1.0/ Big brown bat]</TD><TH ALIGN=CENTER>84X</TH>
<TH ALIGN=CENTER>13454942</TH>
<TH ALIGN=CENTER>13454942</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>36.386%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000334495.1/ 17]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupChi1 tupChi1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000334495.1/ 17]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tupChi1 tupChi1]</TH>
<TH ALIGN=RIGHT>50,750</TH>
<TH ALIGN=RIGHT>50,750</TH>
Line 188: Line 188:
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Tupaia_chinensis/TupChi_1.0/ Chinese tree shrew]</TD><TH ALIGN=CENTER>80X</TH>
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Tupaia_chinensis/TupChi_1.0/ Chinese tree shrew]</TD><TH ALIGN=CENTER>80X</TH>
<TH ALIGN=CENTER>3670124</TH>
<TH ALIGN=CENTER>3670124</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>37.022%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 18]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/286598/ 18]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2]</TH>
<TH ALIGN=RIGHT>34</TH>
<TH ALIGN=RIGHT>34</TH>
Line 197: Line 197:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Horse]</TD><TH ALIGN=CENTER>6.8X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAWR02 Horse]</TD><TH ALIGN=CENTER>6.8X</TH>
<TH ALIGN=CENTER>91571448</TH>
<TH ALIGN=CENTER>91571448</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>52.083%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000311805.1/ 19]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=camFer1 camFer1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000311805.1/ 19]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=camFer1 camFer1]</TH>
<TH ALIGN=RIGHT>13,334</TH>
<TH ALIGN=RIGHT>13,334</TH>
Line 206: Line 206:
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Camelus_ferus/CB1/ Bactrian camel]</TD><TH ALIGN=CENTER>30X</TH>
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Camelus_ferus/CB1/ Bactrian camel]</TD><TH ALIGN=CENTER>30X</TH>
<TH ALIGN=CENTER>2005940</TH>
<TH ALIGN=CENTER>2005940</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>46.206%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000164845.2/ 20]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000164845.2/ 20]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2]</TH>
<TH ALIGN=RIGHT>276,611</TH>
<TH ALIGN=RIGHT>276,611</TH>
Line 215: Line 215:
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Vicugna_pacos/Vicugna_pacos-2.0.1/ Alpaca]</TD><TH ALIGN=CENTER>22X</TH>
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Vicugna_pacos/Vicugna_pacos-2.0.1/ Alpaca]</TD><TH ALIGN=CENTER>22X</TH>
<TH ALIGN=CENTER>7263804</TH>
<TH ALIGN=CENTER>7263804</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>45.887%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/20365 21]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/bioproject/20365 21]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2]</TH>
<TH ALIGN=RIGHT>240,901</TH>
<TH ALIGN=RIGHT>240,901</TH>
Line 224: Line 224:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN02 Dolphin]</TD><TH ALIGN=CENTER>3.5X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=ABRN02 Dolphin]</TD><TH ALIGN=CENTER>3.5X</TH>
<TH ALIGN=CENTER>116261</TH>
<TH ALIGN=CENTER>116261</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>46.072%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/85 22]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/85 22]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3]</TH>
<TH ALIGN=RIGHT>3,268</TH>
<TH ALIGN=RIGHT>3,268</TH>
Line 242: Line 242:
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orcinus_orca/Oorc_1.1/ Killer whale]</TD><TH ALIGN=CENTER>200X</TH>
   <TD ALIGN=CENTER>[ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Orcinus_orca/Oorc_1.1/ Killer whale]</TD><TH ALIGN=CENTER>200X</TH>
<TH ALIGN=CENTER>12735091</TH>
<TH ALIGN=CENTER>12735091</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>47.281%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 24]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/genome/assembly/317808/ 24]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2]</TH>
<TH ALIGN=RIGHT>12,483</TH>
<TH ALIGN=RIGHT>12,483</TH>
Line 251: Line 251:
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Squirrel]</TD><TH ALIGN=CENTER>495X</TH>
   <TD ALIGN=CENTER>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AGTP01 Squirrel]</TD><TH ALIGN=CENTER>495X</TH>
<TH ALIGN=CENTER>8192786</TH>
<TH ALIGN=CENTER>8192786</TH>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>N/A</TD>
   <TH ALIGN=CENTER>Net</TH><TD ALIGN=RIGHT>44.729%</TD>
<TD ALIGN=RIGHT>1000</TD>
<TD ALIGN=RIGHT>3000</TD>
   <TD ALIGN=CENTER>N/A</TD></TR>
   <TD ALIGN=CENTER>medium</TD></TR>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000325575.1/ 25]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteAle1 pteAle1]</TH>
<TR><TH ALIGN=RIGHT>[http://www.ncbi.nlm.nih.gov/assembly/GCA_000325575.1/ 25]</TH><TH ALIGN=RIGHT>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=pteAle1 pteAle1]</TH>
<TH ALIGN=RIGHT>65,597</TH>
<TH ALIGN=RIGHT>65,597</TH>

Revision as of 22:27, 11 February 2015

see also

statistics collected from UCSC 2bit files

  • The external link in the first column goes to the FTP location where the genome sequence was obtained
  • The external links from the UCSC database name go to the UCSC genome-test browser for that genome
  • N bases == unknown bases in the assembly marked by "N"
  • non-N bases == called bases in the assembly
  • total size == all bases in assembly, N and non-N
  • The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
  • The common name external links go to information pages for this genome
  • The coverage numbers are taken directly from information README files from the sequencing center
  • The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

do not edit, automatically generated table

order
count/
ftp src
ucsc
db name/
genome-test
chrom
count
total
size
non-N
bases
N base
count
% masked common name/
src info
coverage N50
chrom.sizes
alignment type % of hg38
matched
(chainLink table)
chain
minScore
chain
linearGap
01hg38 455 3,209,286,1053,049,315,783 159,970,322% 52.10 Human20X 145138636 N/AN/A 3000 medium
02panTro4 24,129 3,309,577,9222,902,338,967 407,238,955% 51.29 Chimp6X 143986469 Net93.112% 5000 medium
03gorGor3 46,823 3,029,553,6462,822,760,080 206,793,566% 48.80 Gorilla2.1X 145327772 Net88.005% 3000 medium
04ponAbe2 55 3,446,771,3963,093,543,172 353,228,224% 50.89 Orangutan6X 135191526 Net89.187% 5000 medium
05nomLeu3 17,492 2,962,077,4492,756,609,047 205,468,402% 51.14 Gibbon5.6X 117381234 Net86.379% 3000 medium
06macFas5 7,601 2,946,843,7372,803,866,385 142,977,352% 50.11 Crab-eating macaque68X 152835861 Net85.675% 3000 medium
07rheMac3 34,103 2,969,988,1802,639,145,830 330,842,350% 48.54 Rhesus50X 150158102 Net79.729% 5000 medium
08papAnu2 63,250 2,948,380,7102,893,250,291 55,130,419% 38.95 Baboon85X 139646187 Net84.179% 3000 medium
09saiBol1 2,685 2,608,572,0642,477,131,095 131,440,969% 46.69 Squirrel monkey80X 18744880 Net70.565% 3000 medium
10chlSab2 2,004 2,789,656,3282,752,000,999 37,655,329% 48.77 Green monkey95X 101219884 Net84.393% 5000 medium
11calJac3 14,205 2,914,958,5442,752,505,800 162,452,744% 47.71 Marmoset6X 132174527 Net71.709% 3000 medium
12oryAfe1 22,509 4,444,080,5273,415,340,621 1,028,739,906% 31.09 Aardvark44X 7875832 Net36.526% 3000 medium
13otoGar3 7,793 2,519,724,5502,359,530,453 160,194,097% 39.51 Bushbaby137X 13852661 Net49.485% 3000 medium
14cerSim1 3,087 2,464,367,1802,366,858,012 97,509,168% 38.80 White rhinoceros91X 26277727 Net53.075% 3000 medium
15chrAsi1 20,500 4,210,110,4583,363,564,316 846,546,142% 20.11 Cape golden mole66X 13470186 Net29.208% 3000 medium
16eptFus1 6,788 2,026,627,1851,811,378,799 215,248,386% 24.11 Big brown bat84X 13454942 Net36.386% 3000 medium
17tupChi1 50,750 2,846,580,2352,706,389,135 140,191,100% 40.02 Chinese tree shrew80X 3670124 Net37.022% 3000 medium
18equCab2 34 2,484,532,0622,428,790,173 55,741,889% 40.97 Horse6.8X 91571448 Net52.083% 3000 medium
19camFer1 13,334 2,009,194,6091,985,416,433 23,778,176% 33.32 Bactrian camel30X 2005940 Net46.206% 3000 medium
20vicPac2 276,611 2,172,177,9942,078,582,856 93,595,138% 35.40 Alpaca22X 7263804 Net45.887% 3000 medium
21turTru2 240,901 2,551,996,5732,332,402,443 219,594,130% 43.56 Dolphin3.5X 116261 Net46.072% 3000 medium
22canFam3 3,268 2,410,976,8752,392,715,236 18,261,639% 43.01 Dog7.6X 63241923 Net49.978% 3000 medium
23orcOrc1 1,668 2,372,919,8772,249,582,112 123,337,765% 42.47 Killer whale200X 12735091 Net47.281% 3000 medium
24speTri2 12,483 2,478,393,7702,311,060,300 167,333,470% 36.27 Squirrel495X 8192786 Net44.729% 3000 medium
25pteAle1 65,597 1,985,958,7071,944,625,202 41,333,505% 32.56 Black flying-fox110X 15954802 NetN/A 1000 N/A
26susScr3 4,583 2,808,525,9912,518,987,191 289,538,800% 44.30 Pig24X 148491826 NetN/A 1000 N/A
27loxAfr3 2,353 3,196,760,8333,118,565,340 78,195,493% 47.63 Elephant7X 46401353 NetN/A 1000 N/A
28hetGla2 4,229 2,618,204,6392,314,771,103 303,433,536% 32.31 Naked mole-rat90X 20532749 NetN/A 1000 N/A
29pteVam1 96,944 1,996,076,4101,839,436,660 156,639,750% 31.75 Megabat2X 124060 NetN/A 1000 N/A
30felCat8 267,625 2,641,342,2582,599,700,169 41,642,089% 44.41 Cat20X 142431058 NetN/A 1000 N/A
31ailMel1 81,467 2,299,509,0152,245,312,831 54,196,184% 38.96 Panda73X 1281781 NetN/A 1000 N/A
32musFur1 7,741 2,410,758,0132,277,906,570 132,851,443% 38.98 Ferret 162X 9335154 NetN/A 1000 N/A
33cavPor3 3,144 2,723,219,6412,663,369,733 59,849,908% 27.53 Guinea pig6.76X 27942054 NetN/A 1000 N/A
34dasNov3 46,559 3,631,522,7113,299,882,028 331,640,683% 49.28 Armadillo6X 1687935 NetN/A 1000 N/A
35oryCun2 3,242 2,737,490,5012,604,023,284 133,467,217% 43.74 Rabbit6.51X 111795807 NetN/A 1000 N/A
36panHod1 15,059 2,696,886,3302,507,986,438 188,899,892% 42.51 Tibetan antelope67X 2772860 NetN/A 1000 N/A
37lepWed1 16,711 3,156,902,7622,223,164,129 933,738,633% 40.09 Weddell seal82X 904031 NetN/A 1000 N/A
38odoRosDiv1 3,892 2,400,133,6282,300,235,509 99,898,119% 40.52 Pacific walrus200X 2616778 NetN/A 1000 N/A
39myoDav1 101,769 2,059,799,7081,878,461,987 181,337,721% 23.35 David's myotis (bat)110X 3454484 NetN/A 1000 N/A
40bosTau8 3,179 2,670,044,5002,649,304,231 20,740,269% 48.69 Cow9X 105708250 Net45.975% 3000 medium
41capHir1 77,021 2,635,848,9002,495,939,845 139,909,055% 43.55 Domestic goat86.64X 92306894 NetN/A 1000 N/A
42oviAri3 5,698 2,619,054,3882,534,335,866 84,718,522% 45.18 Sheep142X 100079507 Net41.193% 3000 medium
43myoLuc2 11,654 2,034,575,3001,966,419,868 68,155,432% 33.71 Microbat2.18X 4293315 NetN/A 1000 N/A
44eleEdw1 8,768 3,843,982,8613,315,871,847 528,111,014% 49.11 Cape elephant shrew62X 15011382 NetN/A 1000 N/A
45triMan1 6,323 3,103,808,4062,769,099,677 334,708,729% 36.24 Manatee150X 14442683 NetN/A 1000 N/A
46jacJac1 10,896 2,835,242,7672,470,259,869 364,982,898% 37.29 Lesser Egyptian jerboa78X 22080993 NetN/A 1000 N/A
47chiLan1 2,838 2,390,852,3912,284,276,400 106,575,991% 30.82 Chinchilla87X 21893125 NetN/A 1000 N/A
48conCri1 2,038 1,769,657,8971,682,542,007 87,115,890% 18.21 Star-nosed mole113.1X 55520359 NetN/A 1000 N/A
49octDeg1 7,134 2,995,882,9382,526,254,692 469,628,246% 26.47 Brush-tailed rat80X 12091372 NetN/A 1000 N/A
50ochPri3 10,420 2,229,835,7161,943,987,870 285,847,846% 29.53 Pika103X 26863993 NetN/A 1000 N/A
51eriEur2 5,803 2,715,720,9252,333,073,535 382,647,390% 45.60 Hedgehog79X 3264618 NetN/A 1000 N/A
52echTel2 8,402 2,947,024,2862,605,196,361 341,827,925% 28.26 Tenrec78X 45764842 NetN/A 1000 N/A
53mm10 66 2,730,871,7742,652,783,500 78,088,274% 45.18 Mouse20X 130694993 Net31.629% 3000 medium
54rn6 953 2,870,182,9092,729,860,805 140,322,104% 43.31 Rat10X 145729302 NetN/A 1000 N/A
55criGri1 52,711 2,360,146,4282,301,325,917 58,820,511% 27.06 Chinese hamster130X 1558295 NetN/A 1000 N/A
56mesAur1 21,484 2,504,925,0392,076,176,254 428,748,785% 25.70 Golden hamster115X 12753307 NetN/A 1000 N/A
57micOch1 6,335 2,287,340,9432,104,321,675 183,019,268% 23.89 Prairie vole94X 61813736 NetN/A 1000 N/A
58sorAra2 12,845 2,423,158,1832,192,103,426 231,054,757% 32.76 Shrew120X 22794405 NetN/A 1000 N/A
59macEug2 277,711 3,075,184,0242,536,076,954 539,107,070% 47.39 Wallaby2X 36602 NetN/A 1000 N/A
60monDom5 11 3,605,631,7283,501,660,299 103,971,429% 55.95 Opossum6.8X 527952102 Net14.370% 5000 loose
61sarHar1 35,974 3,174,693,0102,931,539,702 243,153,308% 39.66 Tasmanian devil85X 1847106 NetN/A 1000 N/A
62apaSpi1 286,620 1,931,078,8471,877,982,184 53,096,663% 29.87 Spiny softshell turtle33.4X 2306994 NetN/A 1000 N/A
63cheMyd1 140,023 2,208,410,3772,110,381,997 98,028,380% 29.65 Green seaturtle110X 3864108 Net6.296% 5000 loose
64chrPic2 78,595 2,365,766,5622,173,204,089 192,562,473% 31.52 Painted turtle15X 7072151 Net6.708% 5000 loose
65pelSin1 19,904 2,202,483,7522,106,639,384 95,844,368% 33.82 Chinese softshell turtle105X 3350749 NetN/A 1000 N/A
66ornAna1 201,523 1,996,811,2121,842,235,522 154,575,690% 47.89 Platypus6X 991605 NetN/A 1000 N/A
67allMis1 14,645 2,174,259,8882,128,720,123 45,539,765% 37.18 American alligator68X 508966 NetN/A 1000 N/A
68colLiv1 14,923 1,107,989,0851,086,925,875 21,063,210% 19.83 Rock pigeon60X 3148738 NetN/A 1000 N/A
69galGal4 15,932 1,046,932,0991,032,854,810 14,077,289% 20.41 Chicken12X 90216835 NetN/A 1000 N/A
70anoCar2 6,457 1,799,143,5871,701,353,767 97,789,820% 41.98 Lizard7.1X 150641573 Net3.593% 5000 loose
71anaPla1 78,488 1,105,052,3511,069,972,754 35,079,597% 20.21 Mallard duck60X 1233631 NetN/A 1000 N/A
72melGal1 5,891 1,061,817,101935,922,386 125,894,715% 6.60 Turkey5X 74864452 NetN/A 1000 N/A
73falChe1 5,863 1,174,811,7151,150,993,769 23,817,946% 18.62 Saker falcon147X 4154532 NetN/A 1000 N/A
74falPer1 7,021 1,171,973,4311,153,404,348 18,569,083% 18.69 Peregrine falcon137.6X 3935757 NetN/A 1000 N/A
75amaVit1 182,974 1,175,404,0421,128,255,752 47,148,290% 18.36 Parrot24X 19239 NetN/A 1000 N/A
76araMac1 192,790 1,204,700,227997,522,769 207,177,458% 16.49 Scarlet Macaw26X 15974 NetN/A 1000 N/A
77pseHum1 5,406 1,042,997,6321,030,030,436 12,967,196% 20.21 Tibetan ground jay96.25X 16337386 NetN/A 1000 N/A
78melUnd1 25,212 1,117,373,6191,086,614,815 30,758,804% 19.62 Budgerigar7X 10614383 NetN/A 1000 N/A
79ficAlb2 21,428 1,118,343,5871,102,323,882 16,019,705% 24.04 Collared flycatcher60X 64724594 NetN/A 1000 N/A
80zonAlb1 6,018 1,052,600,5611,006,293,510 46,307,051% 20.03 White-throated sparrow63X 4866725 NetN/A 1000 N/A
81geoFor1 27,239 1,065,292,1811,041,286,029 24,006,152% 19.99 Medium ground finch115X 5255844 NetN/A 1000 N/A
82taeGut2 37,096 1,232,135,5911,222,864,691 9,270,900% 8.11 Zebra finch5.5X 62374962 NetN/A 1000 N/A
83lepOcu1 1,925 945,874,548869,414,359 76,460,189% 24.85 Spotted gar677.5X 50348508 NetN/A 1000 N/A
84xenTro7 7,728 1,437,530,8791,365,936,747 71,594,132% 33.98 X. tropicalis7.44X 124127367 NetN/A 1000 N/A
85latCha1 22,819 2,860,591,9212,183,592,768 676,999,153% 45.68 Coelacanth77.5X 924513 NetN/A 1000 N/A
86gadMor1 427,428 824,327,835608,038,555 216,289,280% 31.25 Atlantic cod40X 393166 NetN/A 1000 N/A
87gasAcu1 23 463,354,448446,627,861 16,726,587% 2.58 Stickleback6X 20083130 NetN/A 1000 N/A
88oreNil2 5,678 927,696,114816,084,674 111,611,440% 25.51 Nile tilapia269X 27159252 NetN/A 1000 N/A
89tetNig2 27 358,618,246302,314,788 56,303,458% 20.27 Tetraodon7.9X 13390619 NetN/A 1000 N/A
90neoBri1 9,083 847,883,811685,897,279 161,986,532% 24.12 Princess of Burundi171X 4430025 NetN/A 1000 N/A
91takFla1 34,223 377,992,166314,409,984 63,582,182% 17.77 Yellowbelly pufferfish131X 315240 NetN/A 1000 N/A
92hapBur1 7,994 831,398,301698,936,397 132,461,904% 24.10 Burton's mouthbreeder131X 1194190 NetN/A 1000 N/A
93fr3 6,835 391,484,715350,961,831 40,522,884% 19.01 Fugu8.5X 11516971 NetN/A 1000 N/A
94astMex1 10,736 1,191,259,254964,251,514 227,007,740% 39.11 Mexican tetra (cavefish)70X 1775308 NetN/A 1000 N/A
95petMar2 25,006 885,550,958647,368,134 238,182,824% 42.47 Lamprey5.0X 184619 Net1.265% 5000 loose
96danRer10 1,061 1,371,719,3831,369,631,918 2,087,465% 52.32 Zebrafish30X 53345113 Net3.357% 5000 loose
97mayZeb1 3,725 849,595,388713,527,863 136,067,525% 25.04 Zebra Mbuna129.7X 3702874 Net1.805% 5000 loose
98punNye1 7,233 830,129,318698,757,151 131,372,167% 24.56 Pundamilia nyererei126X 2525540 Net1.787% 5000 loose
99oryLat2 7,189 869,000,216700,386,597 168,613,619% 33.09 Medaka10.6X 29908082 Net2.002% 5000 loose
100xipMac1 20,632 729,664,433652,811,251 76,853,182% 26.62 Southern platyfish19.6X 1303070 Net1.898% 5000 loose