UCSC to RefSeq correspondence: Difference between revisions

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(now with near match and subsets)
(explination of the different categories)
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The correspondence indicated here is exact.  Each sequence
The correspondences show here are ''exact, subset'',
in both assemblies is identical.  Future improvement to this table
and ''near match''.
will indicate subsets, when one assembly is a complete subset of
the other, and partial matches when one assembly is mostly
identical to the other.


The columns can be sorted.  Click on the small arrow
The columns can be sorted.  Click on the small arrow
icon next to the column header name
icon next to the column header label.


The external links go to:
The external links go to:
Line 14: Line 11:




Note about the <span style="color:red">(has dups)</span> indication.
Note about the <span style='color:red'>(has dups ''N'')</span> indication.
Some older assemblies have entire sequences duplicated in multiple contigs
Some older assemblies have entire sequences duplicated in multiple contigs
in both the NCBI assembly and the UCSC assembly.  Most newer UCSC assemblies
in both the NCBI assembly and the UCSC assembly.  Most newer UCSC assemblies
have removed the duplicate contigs, and newer NCBI assemblies now also
have removed the duplicate contigs, and newer NCBI assemblies now also
remove the duplicate contigs.  These duplicate contigs will cause
remove the duplicate contigs.  The ''N'' indicates how many duplicate
sequences are in the assembly.  These duplicate contigs will cause
confusion when coordinating chromosome names.
confusion when coordinating chromosome names.
Note about the <span style='color:green'>(subset ''N'' of ''M'')</span> indication.
When all contigs of one assembly are completely found in the other assembly,
it is marked as a <span style='color:green'>(subset ''N'' of ''M'')</span>.  This is
often the result of one assembly including a '''chrM/chrMT''' sequence,
or duplicate sequences removed from one of the assemblies.  The
''N'' of ''M'' counts the number of sequences in the subset vs. the
superset after duplicate sequences have been removed.
Note about the <span style='color:green'>(near match ''N'' of ''M'')</span> indication.
When ''almost'' all contigs of one assembly are completely found in the other
assembly, it is marked as a <span style='color:green'>
(near match ''N'' of ''M'')</span>.
This is often the result of different sequences for '''chrM/chrMT''',
included in each of the assemblies, or a different combination rearrangement
of sequences in one assembly.  For example '''monDom5''' at UCSC combines
all ''unplaced'' contigs into a single '''chrUn''' sequence whereas NCBI
keeps those contigs as separate sequences. The
''N'' of ''M'' counts the number of sequences identical vs. the
total sequences in the other assembly.  The limit in this notation
is a maximum difference of two sequences in the smaller assembly, and only
for vertebrate_mammalian and vertebrate_other assemblies.


{| border='1' style='border-collapse:collapse' class='wikitable sortable'
{| border='1' style='border-collapse:collapse' class='wikitable sortable'

Revision as of 22:29, 12 August 2016

The correspondences show here are exact, subset, and near match.

The columns can be sorted. Click on the small arrow icon next to the column header label.

The external links go to:

  • UCSC browser - genome-test genome browser
  • Entrez assembly - assembly information page at NCBI
  • NCBI FTP - ftp directory at NCBI where the assembly can be obtained


Note about the (has dups N) indication. Some older assemblies have entire sequences duplicated in multiple contigs in both the NCBI assembly and the UCSC assembly. Most newer UCSC assemblies have removed the duplicate contigs, and newer NCBI assemblies now also remove the duplicate contigs. The N indicates how many duplicate sequences are in the assembly. These duplicate contigs will cause confusion when coordinating chromosome names.

Note about the (subset N of M) indication. When all contigs of one assembly are completely found in the other assembly, it is marked as a (subset N of M). This is often the result of one assembly including a chrM/chrMT sequence, or duplicate sequences removed from one of the assemblies. The N of M counts the number of sequences in the subset vs. the superset after duplicate sequences have been removed.

Note about the (near match N of M) indication. When almost all contigs of one assembly are completely found in the other assembly, it is marked as a (near match N of M). This is often the result of different sequences for chrM/chrMT, included in each of the assemblies, or a different combination rearrangement of sequences in one assembly. For example monDom5 at UCSC combines all unplaced contigs into a single chrUn sequence whereas NCBI keeps those contigs as separate sequences. The N of M counts the number of sequences identical vs. the total sequences in the other assembly. The limit in this notation is a maximum difference of two sequences in the smaller assembly, and only for vertebrate_mammalian and vertebrate_other assemblies.



UCSC to Genbank assembly accession correspondence
count UCSC browser scientific name(s) common name Entrez assembly NCBI FTP
1 CHM1 mole Homo sapiens hydatidiform mole assembly chm1 GCF_000306695.2_CHM1_1.1 vertebrate_mammalian
2 ailMel1 Ailuropoda melanoleuca Panda GCF_000004335.2_AilMel_1.0 vertebrate_mammalian
3 balAcu1 Balaenoptera acutorostrata scammoni Minke whale GCF_000493695.1_BalAcu1.0 vertebrate_mammalian
4 bosTau8 Bos taurus Cow GCF_000003055.5_Bos_taurus_UMD_3.1.1 vertebrate_mammalian
5 bubBub1 Bubalus bubalis Water buffalo GCF_000471725.1_UMD_CASPUR_WB_2.0 vertebrate_mammalian
6 calJac3 Callithrix jacchus Marmoset GCF_000004665.1_Callithrix_jacchus-3.2 vertebrate_mammalian
7 camFer1 Camelus ferus Bactrian camel GCF_000311805.1_CB1 vertebrate_mammalian
8 canFam3 Canis lupus familiaris Dog GCF_000002285.3_CanFam3.1 vertebrate_mammalian
9 capHir1 Capra hircus Domestic goat GCF_000317765.1_CHIR_1.0 vertebrate_mammalian
10 cavPor3 Cavia porcellus Guinea pig GCF_000151735.1_Cavpor3.0 vertebrate_mammalian
11 cerSim1 Ceratotherium simum White rhinoceros GCF_000283155.1_CerSimSim1.0 vertebrate_mammalian
12 chlSab2 Chlorocebus sabaeus Green monkey GCF_000409795.2_Chlorocebus_sabeus_1.1 vertebrate_mammalian
13 chrAsi1 Chrysochloris asiatica Cape golden mole GCF_000296735.1_ChrAsi1.0 vertebrate_mammalian
14 colAng1 Colobus angolensis palliatus Angolan colobus GCF_000951035.1_Cang.pa_1.0 vertebrate_mammalian
15 dasNov3 Dasypus novemcinctus Armadillo GCF_000208655.1_Dasnov3.0 vertebrate_mammalian
16 echTel2 Echinops telfairi Tenrec GCF_000313985.1_EchTel2.0 vertebrate_mammalian
17 eleEdw1 Elephantulus edwardii Cape elephant shrew GCF_000299155.1_EleEdw1.0 vertebrate_mammalian
18 eriEur2 Erinaceus europaeus Hedgehog GCF_000296755.1_EriEur2.0 vertebrate_mammalian
19 felCat5

(has dups: 1)

Felis catus Cat GCF_000181335.1_Felis_catus-6.2

(has dups: 1)

vertebrate_mammalian
20 felCat8 Felis catus Cat GCF_000181335.2_Felis_catus_8.0 vertebrate_mammalian
21 galVar1 Galeopterus variegatus Malayan flying lemur GCF_000696425.1_G_variegatus-3.0.2 vertebrate_mammalian
22 hetGla2 Heterocephalus glaber Naked mole-rat GCF_000247695.1_HetGla_female_1.0 vertebrate_mammalian
23 hg38 Homo sapiens Human GCF_000001405.26_GRCh38 vertebrate_mammalian
24 lepWed1 Leptonychotes weddellii Weddell seal GCF_000349705.1_LepWed1.0 vertebrate_mammalian
25 lipVex1 Lipotes vexillifer Yangtze river dolphin GCF_000442215.1_Lipotes_vexillifer_v1 vertebrate_mammalian
26 macFas5 Macaca fascicularis Crab-eating macaque GCF_000364345.1_Macaca_fascicularis_5.0 vertebrate_mammalian
27 mesAur1 Mesocricetus auratus Golden hamster GCF_000349665.1_MesAur1.0 vertebrate_mammalian
28 micMur2 Microcebus murinus Mouse lemur GCF_000165445.1_Mmur_2.0 vertebrate_mammalian
29 micOch1 Microtus ochrogaster Prairie vole GCF_000317375.1_MicOch1.0 vertebrate_mammalian
30 myoBra1 Myotis brandtii Brandt's myotis (bat) GCF_000412655.1_ASM41265v1 vertebrate_mammalian
31 myoDav1 Myotis davidii David's myotis (bat) GCF_000327345.1_ASM32734v1 vertebrate_mammalian
32 myoLuc2 Myotis lucifugus Microbat GCF_000147115.1_Myoluc2.0 vertebrate_mammalian
33 nanGal1 Nannospalax galili Upper Galilee mountains blind mole rat GCF_000622305.1_S.galili_v1.0 vertebrate_mammalian
34 orcOrc1 Orcinus orca Killer whale GCF_000331955.2_Oorc_1.1 vertebrate_mammalian
35 oryAfe1 Orycteropus afer afer Aardvark GCF_000298275.1_OryAfe1.0 vertebrate_mammalian
36 otoGar3

(has dups: 139)

Otolemur garnettii Bushbaby GCF_000181295.1_OtoGar3

(has dups: 139)

vertebrate_mammalian
37 oviAri3 Ovis aries Sheep GCF_000298735.1_Oar_v3.1 vertebrate_mammalian
38 panHod1 Pantholops hodgsonii Tibetan antelope GCF_000400835.1_PHO1.0 vertebrate_mammalian
39 panPan1 Pan paniscus Bonobo GCF_000258655.1_panpan1 vertebrate_mammalian
40 panPan2 Pan paniscus Bonobo GCF_000258655.2_panpan1.1 vertebrate_mammalian
41 panTig1 Panthera tigris altaica Amur tiger GCF_000464555.1_PanTig1.0 vertebrate_mammalian
42 panTro4 Pan troglodytes Chimp GCF_000001515.6_Pan_troglodytes-2.1.4 vertebrate_mammalian
43 panTro5 Pan troglodytes Chimp GCF_000001515.7_Pan_tro_3.0 vertebrate_mammalian
44 papAnu2 Papio anubis Baboon GCF_000264685.1_Panu_2.0 vertebrate_mammalian
45 perManBai1 Peromyscus maniculatus bairdii Prairie deer mouse GCF_000500345.1_Pman_1.0 vertebrate_mammalian
46 phyCat1 Physeter catodon Sperm whale GCF_000472045.1_Physeter_macrocephalus-2.0.2 vertebrate_mammalian
47 rheMac8 Macaca mulatta Rhesus GCF_000772875.2_Mmul_8.0.1 vertebrate_mammalian
48 rhiRox1 Rhinopithecus roxellana Golden snub-nosed monkey GCF_000769185.1_Rrox_v1 vertebrate_mammalian
49 rouAeg1 Rousettus aegyptiacus Egyptian rousette GCF_001466805.2_Raegyp2.0 vertebrate_mammalian
50 sarHar1 Sarcophilus harrisii Tasmanian devil GCF_000189315.1_Devil_ref_v7.0 vertebrate_mammalian
51 sorAra2 Sorex araneus Shrew GCF_000181275.1_SorAra2.0 vertebrate_mammalian
52 speTri2 Spermophilus tridecemlineatus Squirrel GCF_000236235.1_SpeTri2.0 vertebrate_mammalian
53 susScr3 Sus scrofa Pig GCF_000003025.5_Sscrofa10.2 vertebrate_mammalian
54 tarSyr2 Tarsius syrichta Tarsier GCF_000164805.1_Tarsius_syrichta-2.0.1 vertebrate_mammalian
55 tarSyr2 Tarsius syrichta Tarsier GCF_000164805.1_Tarsius_syrichta-2.0.1 vertebrate_mammalian
56 triMan1 Trichechus manatus latirostris Manatee GCF_000243295.1_TriManLat1.0 vertebrate_mammalian
57 tupChi1 Tupaia chinensis Chinese tree shrew GCF_000334495.1_TupChi_1.0 vertebrate_mammalian
58 ursMar1 Ursus maritimus Polar bear GCF_000687225.1_UrsMar_1.0 vertebrate_mammalian
59 mm10

(subset: 66 of 179)

Mus musculus Mouse GCF_000001635.22_GRCm38.p2 vertebrate_mammalian
60 mm10

(subset: 66 of 182)

Mus musculus Mouse GCF_000001635.23_GRCm38.p3 vertebrate_mammalian
61 mm10

(subset: 66 of 196)

Mus musculus Mouse GCF_000001635.24_GRCm38.p4 vertebrate_mammalian
62 mm10

(subset: 66 of 207)

Mus musculus Mouse GCF_000001635.25_GRCm38.p5 vertebrate_mammalian
63 rn6

(subset: 953 of 953)

Rattus norvegicus Rat GCF_000001895.5_Rnor_6.0

(has dups: 1)

vertebrate_mammalian
64 gorGor3

(subset: 46823 of 50196)

Gorilla gorilla gorilla Gorilla GCF_000151905.1_gorGor3.1 vertebrate_mammalian
65 vicPac2

(subset: 276611 of 276611)

Vicugna pacos Alpaca GCF_000164845.1_Vicugna_pacos-2.0.1

(has dups: 115)

vertebrate_mammalian
66 saiBol1

(subset: 2685 of 2686)

Saimiri boliviensis Squirrel monkey GCF_000235385.1_SaiBol1.0 vertebrate_mammalian
67 octDeg1

(subset: 7134 of 7134)

Octodon degus Brush-tailed rat GCF_000260255.1_OctDeg1.0

(has dups: 1)

vertebrate_mammalian
68 conCri1

(subset: 2038 of 2038)

Condylura cristata Star-nosed mole GCF_000260355.1_ConCri1.0

(has dups: 2)

vertebrate_mammalian
69 chiLan1

(subset: 2838 of 2839)

Chinchilla lanigera Chinchilla GCF_000276665.1_ChiLan1.0 vertebrate_mammalian
70 jacJac1

(subset: 10896 of 10896)

Jaculus jaculus Lesser Egyptian jerboa GCF_000280705.1_JacJac1.0

(has dups: 2)

vertebrate_mammalian
71 ochPri3

(subset: 10420 of 10420)

Ochotona princeps Pika GCF_000292845.1_OchPri3.0

(has dups: 1)

vertebrate_mammalian
72 bosMut1

(subset: 41191 of 41192)

Bos grunniens mutus Wild yak GCF_000298355.1_BosGru_v2.0 vertebrate_mammalian
73 eptFus1

(subset: 6788 of 6788)

Eptesicus fuscus Big brown bat GCF_000308155.1_EptFus1.0

(has dups: 1)

vertebrate_mammalian
74 pteAle1

(subset: 65597 of 65598)

Pteropus alecto Black flying-fox GCF_000325575.1_ASM32557v1 vertebrate_mammalian
75 loxAfr3 Loxodonta africana Elephant GCF_000001905.1_Loxafr3.0

(subset: 2352 of 2353)

vertebrate_mammalian
76 ornAna1 Ornithorhynchus anatinus Platypus GCF_000002275.2_Ornithorhynchus_anatinus_5.0.1

(subset: 200154 of 201523)

vertebrate_mammalian
77 bosTau6 Bos taurus Cow GCF_000003055.6_Bos_taurus_UMD_3.1.1

(subset: 3144 of 3317)

vertebrate_mammalian
78 oryCun2 Oryctolagus cuniculus Rabbit GCF_000003625.3_OryCun2.0

(subset: 3241 of 3242)

vertebrate_mammalian
79 nomLeu3 Nomascus leucogenys Gibbon GCF_000146795.2_Nleu_3.0

(subset: 17484 of 17492)

vertebrate_mammalian
80 turTru2

(has dups: 9)

Tursiops truncatus Dolphin GCF_000151865.2_Ttru_1.4

(has dups: 9) (subset: 240548 of 240891)

vertebrate_mammalian
81 vicPac2 Vicugna pacos Alpaca GCF_000164845.2_Vicugna_pacos-2.0.2

(has dups: 115) (subset: 276610 of 276611)

vertebrate_mammalian
82 criGri1 Cricetulus griseus Chinese hamster GCF_000419365.1_C_griseus_v1.0

(subset: 52710 of 52711)

vertebrate_mammalian
83 bisBis1 Bison bison bison Bison GCF_000754665.1_Bison_UMD1.0

(subset: 128431 of 450182)

vertebrate_mammalian
84 panTro3 Pan troglodytes Chimp GCF_000001515.5_Pan_troglodytes-2.1.4

(near match: 24127 of 24129)

vertebrate_mammalian
85 ornAna2 Ornithorhynchus anatinus Platypus GCF_000002275.2_Ornithorhynchus_anatinus_5.0.1

(near match: 200153 of 200154)

vertebrate_mammalian
86 rheMac2

(near match: 21 of 22)

Macaca mulatta Rhesus GCF_000002255.3_Mmul_051212 vertebrate_mammalian
87 monDom5

(near match: 10 of 11)

Monodelphis domestica Opossum GCF_000002295.2_MonDom5 vertebrate_mammalian
88 equCab2

(near match: 33 of 34)

Equus caballus Horse GCF_000002305.2_EquCab2.0 vertebrate_mammalian
89 bosTau7

(near match: 11691 of 11692)

Bos taurus Cow GCF_000003205.5_Btau_4.6.1 vertebrate_mammalian
90 equPrz1

(near match: 53096 of 53097)

Equus przewalskii Przewalski horse GCF_000696695.1_Burgud vertebrate_mammalian
91 allMis1 Alligator mississippiensis American alligator GCF_000281125.1_allMis0.2 vertebrate_other
92 allSin1 Alligator sinensis Chinese alligator GCF_000455745.1_ASM45574v1 vertebrate_other
93 anaPla1 Anas platyrhynchos Mallard duck GCF_000355885.1_BGI_duck_1.0 vertebrate_other
94 anoCar2 Anolis carolinensis Lizard GCF_000090745.1_AnoCar2.0 vertebrate_other
95 apaVit1 Apaloderma vittatum Bar tailed trogon GCF_000703405.1_ASM70340v1 vertebrate_other
96 aptFor1 Aptenodytes forsteri Emperor penguin GCF_000699145.1_ASM69914v1 vertebrate_other
97 bucRhi1 Buceros rhinoceros silvestris Rhinoceros hornbill GCF_000710305.1_ASM71030v1 vertebrate_other
98 calAnn1 Calypte anna Anna's hummingbird GCF_000699085.1_ASM69908v1 vertebrate_other
99 calMil1 Callorhinchus milii Elephant shark GCF_000165045.1_Callorhinchus_milii-6.1.3 vertebrate_other
100 capCar1 Caprimulgus carolinensis Chuck-will's-widow GCF_000700745.1_ASM70074v1 vertebrate_other
101 carCri1 Cariama cristata Red-legged seriema GCF_000690535.1_ASM69053v1 vertebrate_other
102 chaVoc2 Charadrius vociferus Killdeer GCF_000708025.1_ASM70802v2 vertebrate_other
103 cheMyd1 Chelonia mydas Green seaturtle GCF_000344595.1_CheMyd_1.0 vertebrate_other
104 chlUnd1 Chlamydotis undulata macqueenii Houbara bustard GCF_000695195.1_ASM69519v1 vertebrate_other
105 colLiv1 Columba livia Rock pigeon GCF_000337935.1_Cliv_1.0 vertebrate_other
106 colStr1 Colius striatus Speckled mousebird GCF_000690715.1_ASM69071v1 vertebrate_other
107 corBra1 Corvus brachyrhynchos American crow GCF_000691975.1_ASM69197v1 vertebrate_other
108 cucCan1 Cuculus canorus Common cuckoo GCF_000709325.1_ASM70932v1 vertebrate_other
109 cynSem1 Cynoglossus semilaevis Tongue sole GCF_000523025.1_Cse_v1.0 vertebrate_other
110 danRer10 Danio rerio Zebrafish GCF_000002035.5_GRCz10 vertebrate_other
111 danRer7 Danio rerio Zebrafish GCF_000002035.4_Zv9 vertebrate_other
112 egrGar1 Egretta garzetta Little egret GCF_000687185.1_ASM68718v1 vertebrate_other
113 eurHel1 Eurypyga helias Sunbittern GCF_000690775.1_ASM69077v1 vertebrate_other
114 falChe1 Falco cherrug Saker falcon GCF_000337975.1_F_cherrug_v1.0 vertebrate_other
115 falPer1 Falco peregrinus Peregrine falcon GCF_000337955.1_F_peregrinus_v1.0 vertebrate_other
116 ficAlb2 Ficedula albicollis Collared flycatcher GCF_000247815.1_FicAlb1.5 vertebrate_other
117 fr3 Takifugu rubripes Fugu GCF_000180615.1_FUGU5 vertebrate_other
118 fulGla1 Fulmarus glacialis Northern fulmar GCF_000690835.1_ASM69083v1 vertebrate_other
119 galGal4 Gallus gallus Chicken GCF_000002315.3_Gallus_gallus-4.0 vertebrate_other
120 galGal5 Gallus gallus Chicken GCF_000002315.4_Gallus_gallus-5.0 vertebrate_other
121 gavSte1 Gavia stellata Red-throated loon GCF_000690875.1_ASM69087v1 vertebrate_other
122 gekJap0 notFound notFound GCF_001447785.1_Gekko_japonicus_V1.1 vertebrate_other
123 geoFor1 Geospiza fortis Medium ground finch GCF_000277835.1_GeoFor_1.0 vertebrate_other
124 halAlb1 Haliaeetus albicilla White-tailed eagle GCF_000691405.1_ASM69140v1 vertebrate_other
125 halLeu1 Haliaeetus leucocephalus Bald eagle GCF_000737465.1_Haliaeetus_leucocephalus-4.0 vertebrate_other
126 latCha1 Latimeria chalumnae Coelacanth GCF_000225785.1_LatCha1 vertebrate_other
127 lepDis1 Leptosomus discolor Cuckoo roller GCF_000691785.1_ASM69178v1 vertebrate_other
128 mayZeb1 Maylandia zebra Zebra mbuna GCF_000238955.1_MetZeb1.1 vertebrate_other
129 melUnd1 Melopsittacus undulatus Budgerigar GCF_000238935.1_Melopsittacus_undulatus_6.3 vertebrate_other
130 merNub1 Merops nubicus Northern carmine bee-eater GCF_000691845.1_ASM69184v1 vertebrate_other
131 mesUni1 Mesitornis unicolor Brown roatelo GCF_000695765.1_ASM69576v1 vertebrate_other
132 nipNip1 Nipponia nippon Crested ibis GCF_000708225.1_ASM70822v1 vertebrate_other
133 notCor1 Notothenia coriiceps Black rockcod GCF_000735185.1_NC01 vertebrate_other
134 opiHoa1 Opisthocomus hoazin Hoatzin GCF_000692075.1_ASM69207v1 vertebrate_other
135 oreNil2

(has dups: 170)

Oreochromis niloticus Nile tilapia GCF_000188235.2_Orenil1.1

(has dups: 170)

vertebrate_other
136 pelCri1 Pelecanus crispus Dalmatian pelican GCF_000687375.1_ASM68737v1 vertebrate_other
137 pelSin1 Pelodiscus sinensis Chinese softshell turtle GCF_000230535.1_PelSin_1.0 vertebrate_other
138 phaCar1 Phalacrocorax carbo Great cormorant GCF_000708925.1_ASM70892v1 vertebrate_other
139 phaLep1 Phaethon lepturus White-tailed tropicbird GCF_000687285.1_ASM68728v1 vertebrate_other
140 picPub1 Picoides pubescens Downy woodpecker GCF_000699005.1_ASM69900v1 vertebrate_other
141 poeFor1 Poecilia formosa Amazon molly GCF_000485575.1_Poecilia_formosa-5.1.2 vertebrate_other
142 pseHum1 Pseudopodoces humilis Tibetan ground jay GCF_000331425.1_PseHum1.0 vertebrate_other
143 pteGut1 Pterocles gutturalis Yellow-throated sandgrouse GCF_000699245.1_ASM69924v1 vertebrate_other
144 pytBiv0 notFound notFound GCF_000186305.1_Python_molurus_bivittatus-5.0.2 vertebrate_other
145 pytBiv1 Python bivittatus Burmese python GCF_000186305.1_Python_molurus_bivittatus-5.0.2 vertebrate_other
146 strCam1 Struthio camelus australis Ostrich GCF_000698965.1_ASM69896v1 vertebrate_other
147 taeGut2 Taeniopygia guttata Zebra finch GCF_000151805.1_Taeniopygia_guttata-3.2.4 vertebrate_other
148 tauEry1 Tauraco erythrolophus Red crested turaco GCF_000709365.1_ASM70936v1 vertebrate_other
149 thaSir0 notFound notFound GCF_001077635.1_Thamnophis_sirtalis-6.0 vertebrate_other
150 tinGut2 Tinamus guttatus White throated tinamou GCF_000705375.1_ASM70537v2 vertebrate_other
151 tytAlb1 Tyto alba Barn owl GCF_000687205.1_ASM68720v1 vertebrate_other
152 xenTro7 Xenopus tropicalis X. tropicalis GCF_000004195.2_Xtropicalis_v7 vertebrate_other
153 xenTro7 Xenopus tropicalis X. tropicalis GCF_000004195.2_Xtropicalis_v7 vertebrate_other
154 xipMac1 Xiphophorus maculatus Southern platyfish GCF_000241075.1_Xiphophorus_maculatus-4.4.2 vertebrate_other
155 zonAlb1 Zonotrichia albicollis White-throated sparrow GCF_000385455.1_Zonotrichia_albicollis-1.0.1 vertebrate_other
156 punNye1

(subset: 7233 of 7233)

Pundamilia nyererei Pundamilia nyererei GCF_000239375.1_PunNye1.0

(has dups: 3)

vertebrate_other
157 neoBri1

(subset: 9083 of 9083)

Neolamprologus brichardi Princess of Burundi GCF_000239395.1_NeoBri1.0

(has dups: 16)

vertebrate_other
158 hapBur1

(subset: 7994 of 7994)

Haplochromis burtoni Burton's mouthbreeder GCF_000239415.1_AstBur1.0

(has dups: 7)

vertebrate_other
159 lepOcu1

(subset: 1925 of 1925)

Lepisosteus oculatus Spotted gar GCF_000242695.1_LepOcu1

(has dups: 1)

vertebrate_other
160 serCan1

(subset: 304397 of 304397)

Serinus canaria Canary GCF_000534875.1_SCA1

(has dups: 3)

vertebrate_other
161 stePar1

(subset: 5817 of 5817)

Stegastes partitus Bicolor damselfish GCF_000690725.1_Stegastes_partitus-1.0.2

(has dups: 1)

vertebrate_other
162 pygAde1

(subset: 19264 of 19265)

Pygoscelis adeliae Adelie penguin GCF_000699105.1_ASM69910v1 vertebrate_other
163 esoLuc1

(subset: 5325 of 5326)

Esox lucius Northern pike GCF_000721915.1_EsoLuc1.0 vertebrate_other
164 cypVar1

(subset: 9258 of 9259)

Cyprinodon variegatus Sheepshead minnow GCF_000732505.1_C_variegatus-1.0 vertebrate_other
165 corCor1

(subset: 1298 of 1299)

Corvus cornix cornix Hooded crow GCF_000738735.1_Hooded_Crow_genome vertebrate_other
166 aquChr2

(subset: 1141 of 1142)

Aquila chrysaetos canadensis Golden eagle GCF_000766835.1_Aquila_chrysaetos-1.0.2 vertebrate_other
167 astMex1 Astyanax mexicanus Mexican tetra (cavefish) GCF_000372685.1_Astyanax_mexicanus-1.0.2

(subset: 10735 of 10736)

vertebrate_other
168 manVit1 Manacus vitellinus Golden-collared manakin GCF_000692015.1_ASM69201v2

(subset: 92755 of 92789)

vertebrate_other
169 acaChl1 Acanthisitta chloris Rifleman GCF_000695815.1_ASM69581v1

(subset: 53875 of 53876)

vertebrate_other
170 melGal1

(near match: 5890 of 5891)

Meleagris gallopavo Turkey GCF_000146605.1_Turkey_2.01 vertebrate_other
171 chrPic2

(near match: 78594 of 78595)

Chrysemys picta bellii Painted turtle GCF_000241765.3_Chrysemys_picta_bellii-3.0.3 vertebrate_other
172 poeRet1

(near match: 2766 of 2767)

Poecilia reticulata Guppy GCF_000633615.1_Guppy_female_1.0_MT

(has dups: 1)

vertebrate_other
173 acrEch0 notFound notFound GCF_000204515.1_Aech_3.9 invertebrate
174 apiMel4 Apis mellifera A. mellifera GCF_000002195.4_Amel_4.5 invertebrate
175 attCep0 notFound notFound GCF_000143395.1_Attacep1.0 invertebrate
176 caeRem4 Caenorhabditis remanei C. remanei GCF_000149515.1_ASM14951v1 invertebrate
177 camFlo0 notFound notFound GCF_000147175.1_CamFlo_1.0 invertebrate
178 ce11 Caenorhabditis elegans C. elegans GCF_000002985.6_WBcel235 invertebrate
179 cerBir0 notFound notFound GCF_000611835.1_CerBir1.0 invertebrate
180 ci3 Ciona intestinalis C. intestinalis GCF_000224145.1_KH invertebrate
181 dm6 Drosophila melanogaster D. melanogaster GCF_000001215.4_Release_6_plus_ISO1_MT invertebrate
182 droAna3

(has dups: 2)

Drosophila ananassae D. ananassae GCF_000005115.1_dana_caf1

(has dups: 2)

invertebrate
183 droBia2 Drosophila biarmipes D. biarmipes GCF_000233415.1_Dbia_2.0 invertebrate
184 droBip2 Drosophila bipectinata D. bipectinata GCF_000236285.1_Dbip_2.0 invertebrate
185 droEle2 Drosophila elegans D. elegans GCF_000224195.1_Dele_2.0 invertebrate
186 droEre2 Drosophila erecta D. erecta GCF_000005135.1_dere_caf1 invertebrate
187 droEug2 Drosophila eugracilis D. eugracilis GCF_000236325.1_Deug_2.0 invertebrate
188 droFic2 Drosophila ficusphila D. ficusphila GCF_000220665.1_Dfic_2.0 invertebrate
189 droGri2 Drosophila grimshawi D. grimshawi GCF_000005155.2_dgri_caf1 invertebrate
190 droKik2 Drosophila kikkawai D. kikkawai GCF_000224215.1_Dkik_2.0 invertebrate
191 droMir2 Drosophila miranda D. miranda GCF_000269505.1_DroMir_2.2 invertebrate
192 droMoj3 Drosophila mojavensis D. mojavensis GCF_000005175.2_dmoj_caf1 invertebrate
193 droPer1 Drosophila persimilis D. persimilis GCF_000005195.2_dper_caf1 invertebrate
194 droRho2 Drosophila rhopaloa D. rhopaloa GCF_000236305.1_Drho_2.0 invertebrate
195 droSuz1 Drosophila suzukii D. suzukii GCF_000472105.1_Dsuzukii.v01 invertebrate
196 droTak2 Drosophila takahashii D. takahashii GCF_000224235.1_Dtak_2.0 invertebrate
197 droVir3

(has dups: 1)

Drosophila virilis D. virilis GCF_000005245.1_dvir_caf1

(has dups: 1)

invertebrate
198 droWil2 Drosophila willistoni D. willistoni GCF_000005925.1_dwil_caf1 invertebrate
199 droYak3 Drosophila yakuba D. yakuba GCF_000005975.2_dyak_caf1 invertebrate
200 harSal0 notFound notFound GCF_000147195.1_HarSal_1.0 invertebrate
201 linHum0

(has dups: 1)

notFound notFound GCF_000217595.1_Lhum_UMD_V04

(has dups: 1)

invertebrate
202 lotGig0 Lottia gigantea Limpet GCF_000327385.1_Helro1 invertebrate
203 pogBar0 notFound notFound GCF_000187915.1_Pbar_UMD_V03 invertebrate
204 solInv0 notFound notFound GCF_000188075.1_Si_gnG invertebrate
205 strPur4

(has dups: 1)

Strongylocentrotus purpuratus S. purpuratus GCF_000002235.3_Spur_3.1

(has dups: 1)

invertebrate
206 araTha1 notFound notFound GCF_000001735.3_TAIR10 plant
207 ricCom1 notFound notFound GCF_000151685.1_JCVI_RCG_1.1 plant
208 bunEbo1 Bundibugyo ebolavirus Bundibugyo ebolavirus GCF_000889155.1_ViralProj51245 viral
209 resEbo1 Reston ebolavirus Reston ebolavirus GCF_000854085.1_ViralProj15006 viral
210 sudEbo1 Sudan ebolavirus Sudan ebolavirus GCF_000855585.1_ViralProj15012 viral
211 taiEbo1 Tai Forest ebolavirus Tai forest ebolavirus GCF_000888475.1_ViralProj51257 viral
212 zaiEbo1 Zaire ebolavirus Zaire ebolavirus GCF_000848505.1_ViralProj14703 viral
213 sacCer3 Saccharomyces cerevisiae S. cerevisiae GCF_000146045.2_R64 fungi
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