UCSC to RefSeq correspondence: Difference between revisions
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(updated with RR references) |
(with genbank reference links when available) |
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| Line 72: | Line 72: | ||
! 2 | ! 2 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 ailMel1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=ailMel1 public] | ||
| Ailuropoda_melanoleuca | | Ailuropoda_melanoleuca | ||
| Panda | | Panda | ||
| Line 80: | Line 80: | ||
! 3 | ! 3 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=balAcu1 balAcu1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=balAcu1 balAcu1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=balAcu1 public] | ||
| Balaenoptera_acutorostrata<br>Balaenoptera acutorostrata scammoni | | Balaenoptera_acutorostrata<br>Balaenoptera acutorostrata scammoni | ||
| Minke whale | | Minke whale | ||
| Line 88: | Line 88: | ||
! 4 | ! 4 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau8 bosTau8] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau8 bosTau8] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=bosTau8 public] | ||
| Bos_taurus | | Bos_taurus | ||
| Cow | | Cow | ||
| Line 103: | Line 103: | ||
! 6 | ! 6 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calJac3 calJac3] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=calJac3 public] | ||
| Callithrix_jacchus | | Callithrix_jacchus | ||
| Marmoset | | Marmoset | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000004665.1/ GCF_000004665.1_Callithrix_jacchus-3.2] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000004665.1/ GCF_000004665.1_Callithrix_jacchus-3.2] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000004665.1/ GCA_000004665.1_Callithrix_jacchus-3.2] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Callithrix_jacchus/all_assembly_versions/GCF_000004665.1_Callithrix_jacchus-3.2/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Callithrix_jacchus/all_assembly_versions/GCF_000004665.1_Callithrix_jacchus-3.2/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Callithrix_jacchus/all_assembly_versions/GCA_000004665.1/ GCA_000004665.1_Callithrix_jacchus-3.2] | |||
|- | |- | ||
! 7 | ! 7 | ||
| Line 118: | Line 121: | ||
! 8 | ! 8 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=canFam3 canFam3] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=canFam3 public] | ||
| Canis_lupus<br>Canis lupus familiaris | | Canis_lupus<br>Canis lupus familiaris | ||
| Dog | | Dog | ||
| Line 133: | Line 136: | ||
! 10 | ! 10 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 cavPor3] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=cavPor3 public] | ||
| Cavia_porcellus | | Cavia_porcellus | ||
| Guinea pig | | Guinea pig | ||
| Line 141: | Line 144: | ||
! 11 | ! 11 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cerSim1 cerSim1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=cerSim1 cerSim1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=cerSim1 public] | ||
| Ceratotherium_simum | | Ceratotherium_simum | ||
| White rhinoceros | | White rhinoceros | ||
| Line 166: | Line 169: | ||
| Angolan colobus | | Angolan colobus | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000951035.1/ GCF_000951035.1_Cang.pa_1.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000951035.1/ GCF_000951035.1_Cang.pa_1.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000951035.1/ GCA_000951035.1_Cang.pa_1.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Colobus_angolensis/all_assembly_versions/GCF_000951035.1_Cang.pa_1.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Colobus_angolensis/all_assembly_versions/GCF_000951035.1_Cang.pa_1.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Colobus_angolensis/all_assembly_versions/GCA_000951035.1/ GCA_000951035.1_Cang.pa_1.0] | |||
|- | |- | ||
! 15 | ! 15 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 dasNov3] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=dasNov3 public] | ||
| Dasypus_novemcinctus | | Dasypus_novemcinctus | ||
| Armadillo | | Armadillo | ||
| Line 178: | Line 184: | ||
! 16 | ! 16 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2 echTel2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=echTel2 echTel2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=echTel2 public] | ||
| Echinops_telfairi | | Echinops_telfairi | ||
| Tenrec | | Tenrec | ||
| Line 189: | Line 195: | ||
| Cape elephant shrew | | Cape elephant shrew | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000299155.1/ GCF_000299155.1_EleEdw1.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000299155.1/ GCF_000299155.1_EleEdw1.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000299155.1/ GCA_000299155.1_EleEdw1.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Elephantulus_edwardii/all_assembly_versions/GCF_000299155.1_EleEdw1.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Elephantulus_edwardii/all_assembly_versions/GCF_000299155.1_EleEdw1.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Elephantulus_edwardii/all_assembly_versions/GCA_000299155.1/ GCA_000299155.1_EleEdw1.0] | |||
|- | |- | ||
! 18 | ! 18 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 eriEur2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 eriEur2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=eriEur2 public] | ||
| Erinaceus_europaeus | | Erinaceus_europaeus | ||
| Hedgehog | | Hedgehog | ||
| Line 202: | Line 211: | ||
| style="color:red;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5] | | style="color:red;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat5 felCat5] | ||
(has dups: 1) | (has dups: 1) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=felCat5 public] | ||
| Felis_catus | | Felis_catus | ||
| Cat | | Cat | ||
| Line 211: | Line 220: | ||
! 20 | ! 20 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat8 felCat8] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=felCat8 felCat8] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=felCat8 public] | ||
| Felis_catus | | Felis_catus | ||
| Cat | | Cat | ||
| Line 219: | Line 228: | ||
! 21 | ! 21 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galVar1 galVar1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galVar1 galVar1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=galVar1 public] | ||
| Galeopterus_variegatus | | Galeopterus_variegatus | ||
| Malayan flying lemur | | Malayan flying lemur | ||
| Line 227: | Line 236: | ||
! 22 | ! 22 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 hetGla2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=hetGla2 public] | ||
| Heterocephalus_glaber | | Heterocephalus_glaber | ||
| Naked mole-rat | | Naked mole-rat | ||
| Line 235: | Line 244: | ||
! 23 | ! 23 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg38 hg38] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg38 hg38] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38 public] | ||
| Homo_sapiens | | Homo_sapiens | ||
| Human | | Human | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.26/ GCF_000001405.26_GRCh38] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.26/ GCF_000001405.26_GRCh38] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.15/ GCA_000001405.15_GRCh38] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Homo_sapiens/all_assembly_versions/GCF_000001405.26_GRCh38/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Homo_sapiens/all_assembly_versions/GCF_000001405.26_GRCh38/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Homo_sapiens/all_assembly_versions/GCA_000001405.15/ GCA_000001405.15_GRCh38] | |||
|- | |- | ||
! 24 | ! 24 | ||
| Line 257: | Line 269: | ||
! 26 | ! 26 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macFas5 macFas5] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=macFas5 macFas5] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=macFas5 public] | ||
| Macaca_fascicularis | | Macaca_fascicularis | ||
| Crab-eating macaque | | Crab-eating macaque | ||
| Line 272: | Line 284: | ||
! 28 | ! 28 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur2 micMur2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=micMur2 micMur2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=micMur2 public] | ||
| Microcebus_murinus | | Microcebus_murinus | ||
| Mouse lemur | | Mouse lemur | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000165445.1/ GCF_000165445.1_Mmur_2.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000165445.1/ GCF_000165445.1_Mmur_2.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000165445.2/ GCA_000165445.2_Mmur_2.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Microcebus_murinus/all_assembly_versions/GCF_000165445.1_Mmur_2.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Microcebus_murinus/all_assembly_versions/GCF_000165445.1_Mmur_2.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Microcebus_murinus/all_assembly_versions/GCA_000165445.2/ GCA_000165445.2_Mmur_2.0] | |||
|- | |- | ||
! 29 | ! 29 | ||
| Line 283: | Line 298: | ||
| Prairie vole | | Prairie vole | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000317375.1/ GCF_000317375.1_MicOch1.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000317375.1/ GCF_000317375.1_MicOch1.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000317375.1/ GCA_000317375.1_MicOch1.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Microtus_ochrogaster/all_assembly_versions/GCF_000317375.1_MicOch1.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Microtus_ochrogaster/all_assembly_versions/GCF_000317375.1_MicOch1.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Microtus_ochrogaster/all_assembly_versions/GCA_000317375.1/ GCA_000317375.1_MicOch1.0] | |||
|- | |- | ||
! 30 | ! 30 | ||
| Line 290: | Line 308: | ||
| Brandt's myotis (bat) | | Brandt's myotis (bat) | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000412655.1/ GCF_000412655.1_ASM41265v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000412655.1/ GCF_000412655.1_ASM41265v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000412655.1/ GCA_000412655.1_ASM41265v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Myotis_brandtii/all_assembly_versions/GCF_000412655.1_ASM41265v1/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Myotis_brandtii/all_assembly_versions/GCF_000412655.1_ASM41265v1/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Myotis_brandtii/all_assembly_versions/GCA_000412655.1/ GCA_000412655.1_ASM41265v1] | |||
|- | |- | ||
! 31 | ! 31 | ||
| Line 297: | Line 318: | ||
| David's myotis (bat) | | David's myotis (bat) | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000327345.1/ GCF_000327345.1_ASM32734v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000327345.1/ GCF_000327345.1_ASM32734v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000327345.1/ GCA_000327345.1_ASM32734v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Myotis_davidii/all_assembly_versions/GCF_000327345.1_ASM32734v1/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Myotis_davidii/all_assembly_versions/GCF_000327345.1_ASM32734v1/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Myotis_davidii/all_assembly_versions/GCA_000327345.1/ GCA_000327345.1_ASM32734v1] | |||
|- | |- | ||
! 32 | ! 32 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 myoLuc2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=myoLuc2 public] | ||
| Myotis_lucifugus | | Myotis_lucifugus | ||
| Microbat | | Microbat | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000147115.1/ GCF_000147115.1_Myoluc2.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000147115.1/ GCF_000147115.1_Myoluc2.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000147115.1/ GCA_000147115.1_Myoluc2.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Myotis_lucifugus/all_assembly_versions/GCF_000147115.1_Myoluc2.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Myotis_lucifugus/all_assembly_versions/GCF_000147115.1_Myoluc2.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Myotis_lucifugus/all_assembly_versions/GCA_000147115.1/ GCA_000147115.1_Myoluc2.0] | |||
|- | |- | ||
! 33 | ! 33 | ||
| Line 319: | Line 346: | ||
| Killer whale | | Killer whale | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000331955.2/ GCF_000331955.2_Oorc_1.1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000331955.2/ GCF_000331955.2_Oorc_1.1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000331955.2/ GCA_000331955.2_Oorc_1.1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Orcinus_orca/all_assembly_versions/GCF_000331955.2_Oorc_1.1/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Orcinus_orca/all_assembly_versions/GCF_000331955.2_Oorc_1.1/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Orcinus_orca/all_assembly_versions/GCA_000331955.2/ GCA_000331955.2_Oorc_1.1] | |||
|- | |- | ||
! 35 | ! 35 | ||
| Line 331: | Line 361: | ||
| style="color:red;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3] | | style="color:red;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 otoGar3] | ||
(has dups: 139) | (has dups: 139) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=otoGar3 public] | ||
| Otolemur_garnettii | | Otolemur_garnettii | ||
| Bushbaby | | Bushbaby | ||
| style="color:red;" | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000181295.1/ GCF_000181295.1_OtoGar3] | | style="color:red;" | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000181295.1/ GCF_000181295.1_OtoGar3] | ||
(has dups: 139) | (has dups: 139) | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000181295.3/ GCA_000181295.3_OtoGar3] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Otolemur_garnettii/all_assembly_versions/GCF_000181295.1_OtoGar3/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Otolemur_garnettii/all_assembly_versions/GCF_000181295.1_OtoGar3/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Otolemur_garnettii/all_assembly_versions/GCA_000181295.3/ GCA_000181295.3_OtoGar3] | |||
|- | |- | ||
! 37 | ! 37 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 oviAri3] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 oviAri3] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=oviAri3 public] | ||
| Ovis_aries | | Ovis_aries | ||
| Sheep | | Sheep | ||
| Line 355: | Line 388: | ||
! 39 | ! 39 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panPan1 panPan1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panPan1 panPan1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=panPan1 public] | ||
| Pan_paniscus | | Pan_paniscus | ||
| Bonobo | | Bonobo | ||
| Line 377: | Line 410: | ||
! 42 | ! 42 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro4 panTro4] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=panTro4 public] | ||
| Pan_troglodytes | | Pan_troglodytes | ||
| Chimp | | Chimp | ||
| Line 392: | Line 425: | ||
! 44 | ! 44 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 papAnu2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 papAnu2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=papAnu2 public] | ||
| Papio_anubis | | Papio_anubis | ||
| Baboon | | Baboon | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000264685.1/ GCF_000264685.1_Panu_2.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000264685.1/ GCF_000264685.1_Panu_2.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000264685.1/ GCA_000264685.1_Panu_2.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Papio_anubis/all_assembly_versions/GCF_000264685.1_Panu_2.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Papio_anubis/all_assembly_versions/GCF_000264685.1_Panu_2.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Papio_anubis/all_assembly_versions/GCA_000264685.1/ GCA_000264685.1_Panu_2.0] | |||
|- | |- | ||
! 45 | ! 45 | ||
| Line 403: | Line 439: | ||
| Prairie deer mouse | | Prairie deer mouse | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000500345.1/ GCF_000500345.1_Pman_1.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000500345.1/ GCF_000500345.1_Pman_1.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000500345.1/ GCA_000500345.1_Pman_1.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Peromyscus_maniculatus/all_assembly_versions/GCF_000500345.1_Pman_1.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Peromyscus_maniculatus/all_assembly_versions/GCF_000500345.1_Pman_1.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Peromyscus_maniculatus/all_assembly_versions/GCA_000500345.1/ GCA_000500345.1_Pman_1.0] | |||
|- | |- | ||
! 46 | ! 46 | ||
| Line 414: | Line 453: | ||
! 47 | ! 47 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac8 rheMac8] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac8 rheMac8] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=rheMac8 public] | ||
| Macaca_mulatta | | Macaca_mulatta | ||
| Rhesus | | Rhesus | ||
| Line 436: | Line 475: | ||
! 50 | ! 50 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 sarHar1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=sarHar1 public] | ||
| Sarcophilus_harrisii | | Sarcophilus_harrisii | ||
| Tasmanian devil | | Tasmanian devil | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000189315.1/ GCF_000189315.1_Devil_ref_v7.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000189315.1/ GCF_000189315.1_Devil_ref_v7.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000189315.1/ GCA_000189315.1_Devil_ref_v7.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Sarcophilus_harrisii/all_assembly_versions/GCF_000189315.1_Devil_ref_v7.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Sarcophilus_harrisii/all_assembly_versions/GCF_000189315.1_Devil_ref_v7.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Sarcophilus_harrisii/all_assembly_versions/GCA_000189315.1/ GCA_000189315.1_Devil_ref_v7.0] | |||
|- | |- | ||
! 51 | ! 51 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra2 sorAra2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sorAra2 sorAra2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=sorAra2 public] | ||
| Sorex_araneus | | Sorex_araneus | ||
| Shrew | | Shrew | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000181275.1/ GCF_000181275.1_SorAra2.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000181275.1/ GCF_000181275.1_SorAra2.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000181275.2/ GCA_000181275.2_SorAra2.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Sorex_araneus/all_assembly_versions/GCF_000181275.1_SorAra2.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Sorex_araneus/all_assembly_versions/GCF_000181275.1_SorAra2.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Sorex_araneus/all_assembly_versions/GCA_000181275.2/ GCA_000181275.2_SorAra2.0] | |||
|- | |- | ||
! 52 | ! 52 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=speTri2 speTri2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=speTri2 public] | ||
| Ictidomys_tridecemlineatus<br>Spermophilus tridecemlineatus | | Ictidomys_tridecemlineatus<br>Spermophilus tridecemlineatus | ||
| Squirrel | | Squirrel | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000236235.1/ GCF_000236235.1_SpeTri2.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000236235.1/ GCF_000236235.1_SpeTri2.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000236235.1/ GCA_000236235.1_SpeTri2.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Ictidomys_tridecemlineatus/all_assembly_versions/GCF_000236235.1_SpeTri2.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Ictidomys_tridecemlineatus/all_assembly_versions/GCF_000236235.1_SpeTri2.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Ictidomys_tridecemlineatus/all_assembly_versions/GCA_000236235.1/ GCA_000236235.1_SpeTri2.0] | |||
|- | |- | ||
! 53 | ! 53 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr3 susScr3] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=susScr3 susScr3] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=susScr3 public] | ||
| Sus_scrofa | | Sus_scrofa | ||
| Pig | | Pig | ||
| Line 468: | Line 516: | ||
! 54 | ! 54 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr2 tarSyr2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr2 tarSyr2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=tarSyr2 public] | ||
| Carlito_syrichta<br>Tarsius syrichta | | Carlito_syrichta<br>Tarsius syrichta | ||
| Tarsier | | Tarsier | ||
| Line 476: | Line 524: | ||
! 55 | ! 55 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr2 tarSyr2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=tarSyr2 tarSyr2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=tarSyr2 public] | ||
| Tarsius_syrichta | | Tarsius_syrichta | ||
| Tarsier | | Tarsier | ||
| Line 484: | Line 532: | ||
! 56 | ! 56 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=triMan1 triMan1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=triMan1 public] | ||
| Trichechus_manatus<br>Trichechus manatus latirostris | | Trichechus_manatus<br>Trichechus manatus latirostris | ||
| Manatee | | Manatee | ||
| Line 495: | Line 543: | ||
| Chinese tree shrew | | Chinese tree shrew | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000334495.1/ GCF_000334495.1_TupChi_1.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000334495.1/ GCF_000334495.1_TupChi_1.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000334495.1/ GCA_000334495.1_TupChi_1.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Tupaia_chinensis/all_assembly_versions/GCF_000334495.1_TupChi_1.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Tupaia_chinensis/all_assembly_versions/GCF_000334495.1_TupChi_1.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Tupaia_chinensis/all_assembly_versions/GCA_000334495.1/ GCA_000334495.1_TupChi_1.0] | |||
|- | |- | ||
! 58 | ! 58 | ||
| Line 507: | Line 558: | ||
| style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10] | | style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10] | ||
(subset: 66 of 179) | (subset: 66 of 179) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10 public] | ||
| Mus_musculus | | Mus_musculus | ||
| Mouse | | Mouse | ||
| Line 516: | Line 567: | ||
| style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10] | | style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10] | ||
(subset: 66 of 182) | (subset: 66 of 182) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10 public] | ||
| Mus_musculus | | Mus_musculus | ||
| Mouse | | Mouse | ||
| Line 525: | Line 576: | ||
| style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10] | | style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10] | ||
(subset: 66 of 196) | (subset: 66 of 196) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10 public] | ||
| Mus_musculus | | Mus_musculus | ||
| Mouse | | Mouse | ||
| Line 534: | Line 585: | ||
| style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10] | | style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=mm10 mm10] | ||
(subset: 66 of 207) | (subset: 66 of 207) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10 public] | ||
| Mus_musculus | | Mus_musculus | ||
| Mouse | | Mouse | ||
| Line 543: | Line 594: | ||
| style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn6 rn6] | | style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rn6 rn6] | ||
(subset: 953 of 953) | (subset: 953 of 953) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=rn6 public] | ||
| Rattus_norvegicus | | Rattus_norvegicus | ||
| Rat | | Rat | ||
| Line 553: | Line 604: | ||
| style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3] | | style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 gorGor3] | ||
(subset: 46823 of 50196) | (subset: 46823 of 50196) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=gorGor3 public] | ||
| Gorilla_gorilla<br>Gorilla gorilla gorilla | | Gorilla_gorilla<br>Gorilla gorilla gorilla | ||
| Gorilla | | Gorilla | ||
| Line 562: | Line 613: | ||
| style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2] | | style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2] | ||
(subset: 276611 of 276611) | (subset: 276611 of 276611) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 public] | ||
| Vicugna_pacos | | Vicugna_pacos | ||
| Alpaca | | Alpaca | ||
| Line 572: | Line 623: | ||
| style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1] | | style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 saiBol1] | ||
(subset: 2685 of 2686) | (subset: 2685 of 2686) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=saiBol1 public] | ||
| Saimiri_boliviensis | | Saimiri_boliviensis | ||
| Squirrel monkey | | Squirrel monkey | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000235385.1/ GCF_000235385.1_SaiBol1.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000235385.1/ GCF_000235385.1_SaiBol1.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000235385.1/ GCA_000235385.1_SaiBol1.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Saimiri_boliviensis/all_assembly_versions/GCF_000235385.1_SaiBol1.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Saimiri_boliviensis/all_assembly_versions/GCF_000235385.1_SaiBol1.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Saimiri_boliviensis/all_assembly_versions/GCA_000235385.1/ GCA_000235385.1_SaiBol1.0] | |||
|- | |- | ||
! 67 | ! 67 | ||
| Line 602: | Line 656: | ||
| Chinchilla | | Chinchilla | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000276665.1/ GCF_000276665.1_ChiLan1.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000276665.1/ GCF_000276665.1_ChiLan1.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000276665.1/ GCA_000276665.1_ChiLan1.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Chinchilla_lanigera/all_assembly_versions/GCF_000276665.1_ChiLan1.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Chinchilla_lanigera/all_assembly_versions/GCF_000276665.1_ChiLan1.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Chinchilla_lanigera/all_assembly_versions/GCA_000276665.1/ GCA_000276665.1_ChiLan1.0] | |||
|- | |- | ||
! 70 | ! 70 | ||
| Line 616: | Line 673: | ||
| style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 ochPri3] | | style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 ochPri3] | ||
(subset: 10420 of 10420) | (subset: 10420 of 10420) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=ochPri3 public] | ||
| Ochotona_princeps | | Ochotona_princeps | ||
| Pika | | Pika | ||
| Line 629: | Line 686: | ||
| Wild yak | | Wild yak | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000298355.1/ GCF_000298355.1_BosGru_v2.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000298355.1/ GCF_000298355.1_BosGru_v2.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000298355.1/ GCA_000298355.1_BosGru_v2.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Bos_mutus/all_assembly_versions/GCF_000298355.1_BosGru_v2.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Bos_mutus/all_assembly_versions/GCF_000298355.1_BosGru_v2.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Bos_mutus/all_assembly_versions/GCA_000298355.1/ GCA_000298355.1_BosGru_v2.0] | |||
|- | |- | ||
! 73 | ! 73 | ||
| Line 646: | Line 706: | ||
| Black flying-fox | | Black flying-fox | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000325575.1/ GCF_000325575.1_ASM32557v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000325575.1/ GCF_000325575.1_ASM32557v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000325575.1/ GCA_000325575.1_ASM32557v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Pteropus_alecto/all_assembly_versions/GCF_000325575.1_ASM32557v1/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Pteropus_alecto/all_assembly_versions/GCF_000325575.1_ASM32557v1/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Pteropus_alecto/all_assembly_versions/GCA_000325575.1/ GCA_000325575.1_ASM32557v1] | |||
|- | |- | ||
! 75 | ! 75 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 loxAfr3] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=loxAfr3 public] | ||
| Loxodonta_africana | | Loxodonta_africana | ||
| Elephant | | Elephant | ||
| Line 659: | Line 722: | ||
! 76 | ! 76 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 ornAna1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=ornAna1 public] | ||
| Ornithorhynchus_anatinus | | Ornithorhynchus_anatinus | ||
| Platypus | | Platypus | ||
| Line 668: | Line 731: | ||
! 77 | ! 77 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau6 bosTau6] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau6 bosTau6] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=bosTau6 public] | ||
| Bos_taurus | | Bos_taurus | ||
| Cow | | Cow | ||
| Line 677: | Line 740: | ||
! 78 | ! 78 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 oryCun2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=oryCun2 public] | ||
| Oryctolagus_cuniculus | | Oryctolagus_cuniculus | ||
| Rabbit | | Rabbit | ||
| Line 686: | Line 749: | ||
! 79 | ! 79 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3 nomLeu3] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3 nomLeu3] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=nomLeu3 public] | ||
| Nomascus_leucogenys | | Nomascus_leucogenys | ||
| Gibbon | | Gibbon | ||
| style="color:green;" | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000146795.2/ GCF_000146795.2_Nleu_3.0] | | style="color:green;" | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000146795.2/ GCF_000146795.2_Nleu_3.0] | ||
(subset: 17484 of 17492) | (subset: 17484 of 17492) | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000146795.3/ GCA_000146795.3_Nleu_3.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Nomascus_leucogenys/all_assembly_versions/GCF_000146795.2_Nleu_3.0/ vertebrate_mammalian] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Nomascus_leucogenys/all_assembly_versions/GCF_000146795.2_Nleu_3.0/ vertebrate_mammalian] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_mammalian/Nomascus_leucogenys/all_assembly_versions/GCA_000146795.3/ GCA_000146795.3_Nleu_3.0] | |||
|- | |- | ||
! 80 | ! 80 | ||
| style="color:red;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2] | | style="color:red;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=turTru2 turTru2] | ||
(has dups: 9) | (has dups: 9) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=turTru2 public] | ||
| Tursiops_truncatus | | Tursiops_truncatus | ||
| Dolphin | | Dolphin | ||
| Line 706: | Line 772: | ||
! 81 | ! 81 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 vicPac2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=vicPac2 public] | ||
| Vicugna_pacos | | Vicugna_pacos | ||
| Alpaca | | Alpaca | ||
| Line 716: | Line 782: | ||
! 82 | ! 82 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=criGri1 criGri1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=criGri1 criGri1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=criGri1 public] | ||
| Cricetulus_griseus | | Cricetulus_griseus | ||
| Chinese hamster | | Chinese hamster | ||
| Line 733: | Line 799: | ||
! 84 | ! 84 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro3 panTro3] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=panTro3 panTro3] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=panTro3 public] | ||
| Pan_troglodytes | | Pan_troglodytes | ||
| Chimp | | Chimp | ||
| Line 742: | Line 808: | ||
! 85 | ! 85 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna2 ornAna2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ornAna2 ornAna2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=ornAna2 public] | ||
| Ornithorhynchus_anatinus | | Ornithorhynchus_anatinus | ||
| Platypus | | Platypus | ||
| Line 752: | Line 818: | ||
| style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac2 rheMac2] | | style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=rheMac2 rheMac2] | ||
(near match: 21 of 22) | (near match: 21 of 22) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=rheMac2 public] | ||
| Macaca_mulatta | | Macaca_mulatta | ||
| Rhesus | | Rhesus | ||
| Line 761: | Line 827: | ||
| style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5] | | style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5] | ||
(near match: 10 of 11) | (near match: 10 of 11) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=monDom5 public] | ||
| Monodelphis_domestica | | Monodelphis_domestica | ||
| Opossum | | Opossum | ||
| Line 770: | Line 836: | ||
| style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2] | | style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=equCab2 equCab2] | ||
(near match: 33 of 34) | (near match: 33 of 34) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=equCab2 public] | ||
| Equus_caballus | | Equus_caballus | ||
| Horse | | Horse | ||
| Line 779: | Line 845: | ||
| style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7] | | style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 bosTau7] | ||
(near match: 11691 of 11692) | (near match: 11691 of 11692) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=bosTau7 public] | ||
| Bos_taurus | | Bos_taurus | ||
| Cow | | Cow | ||
| Line 932: | Line 998: | ||
! 108 | ! 108 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=allMis1 allMis1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=allMis1 allMis1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=allMis1 public] | ||
| Alligator_mississippiensis | | Alligator_mississippiensis | ||
| American alligator | | American alligator | ||
| Line 954: | Line 1,020: | ||
! 111 | ! 111 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 anoCar2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=anoCar2 public] | ||
| Anolis_carolinensis | | Anolis_carolinensis | ||
| Lizard | | Lizard | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000090745.1/ GCF_000090745.1_AnoCar2.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000090745.1/ GCF_000090745.1_AnoCar2.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000090745.2/ GCA_000090745.2_AnoCar2.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Anolis_carolinensis/all_assembly_versions/GCF_000090745.1_AnoCar2.0/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Anolis_carolinensis/all_assembly_versions/GCF_000090745.1_AnoCar2.0/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Anolis_carolinensis/all_assembly_versions/GCA_000090745.2/ GCA_000090745.2_AnoCar2.0] | |||
|- | |- | ||
! 112 | ! 112 | ||
| Line 965: | Line 1,034: | ||
| Bar tailed trogon | | Bar tailed trogon | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000703405.1/ GCF_000703405.1_ASM70340v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000703405.1/ GCF_000703405.1_ASM70340v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000703405.1/ GCA_000703405.1_ASM70340v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Apaloderma_vittatum/all_assembly_versions/GCF_000703405.1_ASM70340v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Apaloderma_vittatum/all_assembly_versions/GCF_000703405.1_ASM70340v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Apaloderma_vittatum/all_assembly_versions/GCA_000703405.1/ GCA_000703405.1_ASM70340v1] | |||
|- | |- | ||
! 113 | ! 113 | ||
| Line 972: | Line 1,044: | ||
| Emperor penguin | | Emperor penguin | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000699145.1/ GCF_000699145.1_ASM69914v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000699145.1/ GCF_000699145.1_ASM69914v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000699145.1/ GCA_000699145.1_ASM69914v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Aptenodytes_forsteri/all_assembly_versions/GCF_000699145.1_ASM69914v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Aptenodytes_forsteri/all_assembly_versions/GCF_000699145.1_ASM69914v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Aptenodytes_forsteri/all_assembly_versions/GCA_000699145.1/ GCA_000699145.1_ASM69914v1] | |||
|- | |- | ||
! 114 | ! 114 | ||
| Line 979: | Line 1,054: | ||
| Rhinoceros hornbill | | Rhinoceros hornbill | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000710305.1/ GCF_000710305.1_ASM71030v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000710305.1/ GCF_000710305.1_ASM71030v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000710305.1/ GCA_000710305.1_ASM71030v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Buceros_rhinoceros/all_assembly_versions/GCF_000710305.1_ASM71030v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Buceros_rhinoceros/all_assembly_versions/GCF_000710305.1_ASM71030v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Buceros_rhinoceros/all_assembly_versions/GCA_000710305.1/ GCA_000710305.1_ASM71030v1] | |||
|- | |- | ||
! 115 | ! 115 | ||
| Line 986: | Line 1,064: | ||
| Anna's hummingbird | | Anna's hummingbird | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000699085.1/ GCF_000699085.1_ASM69908v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000699085.1/ GCF_000699085.1_ASM69908v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000699085.1/ GCA_000699085.1_ASM69908v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Calypte_anna/all_assembly_versions/GCF_000699085.1_ASM69908v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Calypte_anna/all_assembly_versions/GCF_000699085.1_ASM69908v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Calypte_anna/all_assembly_versions/GCA_000699085.1/ GCA_000699085.1_ASM69908v1] | |||
|- | |- | ||
! 116 | ! 116 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calMil1 calMil1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=calMil1 calMil1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=calMil1 public] | ||
| Callorhinchus_milii | | Callorhinchus_milii | ||
| Elephant shark | | Elephant shark | ||
| Line 1,001: | Line 1,082: | ||
| Chuck-will's-widow | | Chuck-will's-widow | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000700745.1/ GCF_000700745.1_ASM70074v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000700745.1/ GCF_000700745.1_ASM70074v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000700745.1/ GCA_000700745.1_ASM70074v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Caprimulgus_carolinensis/all_assembly_versions/GCF_000700745.1_ASM70074v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Caprimulgus_carolinensis/all_assembly_versions/GCF_000700745.1_ASM70074v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Caprimulgus_carolinensis/all_assembly_versions/GCA_000700745.1/ GCA_000700745.1_ASM70074v1] | |||
|- | |- | ||
! 118 | ! 118 | ||
| Line 1,008: | Line 1,092: | ||
| Red-legged seriema | | Red-legged seriema | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000690535.1/ GCF_000690535.1_ASM69053v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000690535.1/ GCF_000690535.1_ASM69053v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000690535.1/ GCA_000690535.1_ASM69053v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Cariama_cristata/all_assembly_versions/GCF_000690535.1_ASM69053v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Cariama_cristata/all_assembly_versions/GCF_000690535.1_ASM69053v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Cariama_cristata/all_assembly_versions/GCA_000690535.1/ GCA_000690535.1_ASM69053v1] | |||
|- | |- | ||
! 119 | ! 119 | ||
| Line 1,015: | Line 1,102: | ||
| Killdeer | | Killdeer | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000708025.1/ GCF_000708025.1_ASM70802v2] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000708025.1/ GCF_000708025.1_ASM70802v2] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000708025.2/ GCA_000708025.2_ASM70802v2] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Charadrius_vociferus/all_assembly_versions/GCF_000708025.1_ASM70802v2/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Charadrius_vociferus/all_assembly_versions/GCF_000708025.1_ASM70802v2/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Charadrius_vociferus/all_assembly_versions/GCA_000708025.2/ GCA_000708025.2_ASM70802v2] | |||
|- | |- | ||
! 120 | ! 120 | ||
| Line 1,029: | Line 1,119: | ||
| Houbara bustard | | Houbara bustard | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000695195.1/ GCF_000695195.1_ASM69519v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000695195.1/ GCF_000695195.1_ASM69519v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000695195.1/ GCA_000695195.1_ASM69519v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Chlamydotis_macqueenii/all_assembly_versions/GCF_000695195.1_ASM69519v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Chlamydotis_macqueenii/all_assembly_versions/GCF_000695195.1_ASM69519v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Chlamydotis_macqueenii/all_assembly_versions/GCA_000695195.1/ GCA_000695195.1_ASM69519v1] | |||
|- | |- | ||
! 122 | ! 122 | ||
| Line 1,043: | Line 1,136: | ||
| Speckled mousebird | | Speckled mousebird | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000690715.1/ GCF_000690715.1_ASM69071v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000690715.1/ GCF_000690715.1_ASM69071v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000690715.1/ GCA_000690715.1_ASM69071v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Colius_striatus/all_assembly_versions/GCF_000690715.1_ASM69071v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Colius_striatus/all_assembly_versions/GCF_000690715.1_ASM69071v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Colius_striatus/all_assembly_versions/GCA_000690715.1/ GCA_000690715.1_ASM69071v1] | |||
|- | |- | ||
! 124 | ! 124 | ||
| Line 1,050: | Line 1,146: | ||
| American crow | | American crow | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000691975.1/ GCF_000691975.1_ASM69197v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000691975.1/ GCF_000691975.1_ASM69197v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000691975.1/ GCA_000691975.1_ASM69197v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Corvus_brachyrhynchos/all_assembly_versions/GCF_000691975.1_ASM69197v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Corvus_brachyrhynchos/all_assembly_versions/GCF_000691975.1_ASM69197v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Corvus_brachyrhynchos/all_assembly_versions/GCA_000691975.1/ GCA_000691975.1_ASM69197v1] | |||
|- | |- | ||
! 125 | ! 125 | ||
| Line 1,057: | Line 1,156: | ||
| Common cuckoo | | Common cuckoo | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000709325.1/ GCF_000709325.1_ASM70932v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000709325.1/ GCF_000709325.1_ASM70932v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000709325.1/ GCA_000709325.1_ASM70932v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Cuculus_canorus/all_assembly_versions/GCF_000709325.1_ASM70932v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Cuculus_canorus/all_assembly_versions/GCF_000709325.1_ASM70932v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Cuculus_canorus/all_assembly_versions/GCA_000709325.1/ GCA_000709325.1_ASM70932v1] | |||
|- | |- | ||
! 126 | ! 126 | ||
| Line 1,068: | Line 1,170: | ||
! 127 | ! 127 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer10 danRer10] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer10 danRer10] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer10 public] | ||
| Danio_rerio | | Danio_rerio | ||
| Zebrafish | | Zebrafish | ||
| Line 1,076: | Line 1,178: | ||
! 128 | ! 128 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=danRer7 danRer7] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7 public] | ||
| Danio_rerio | | Danio_rerio | ||
| Zebrafish | | Zebrafish | ||
| Line 1,094: | Line 1,196: | ||
| Sunbittern | | Sunbittern | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000690775.1/ GCF_000690775.1_ASM69077v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000690775.1/ GCF_000690775.1_ASM69077v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000690775.1/ GCA_000690775.1_ASM69077v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Eurypyga_helias/all_assembly_versions/GCF_000690775.1_ASM69077v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Eurypyga_helias/all_assembly_versions/GCF_000690775.1_ASM69077v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Eurypyga_helias/all_assembly_versions/GCA_000690775.1/ GCA_000690775.1_ASM69077v1] | |||
|- | |- | ||
! 131 | ! 131 | ||
| Line 1,101: | Line 1,206: | ||
| Saker falcon | | Saker falcon | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000337975.1/ GCF_000337975.1_F_cherrug_v1.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000337975.1/ GCF_000337975.1_F_cherrug_v1.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000337975.1/ GCA_000337975.1_F_cherrug_v1.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Falco_cherrug/all_assembly_versions/GCF_000337975.1_F_cherrug_v1.0/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Falco_cherrug/all_assembly_versions/GCF_000337975.1_F_cherrug_v1.0/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Falco_cherrug/all_assembly_versions/GCA_000337975.1/ GCA_000337975.1_F_cherrug_v1.0] | |||
|- | |- | ||
! 132 | ! 132 | ||
| Line 1,115: | Line 1,223: | ||
| Collared flycatcher | | Collared flycatcher | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000247815.1/ GCF_000247815.1_FicAlb1.5] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000247815.1/ GCF_000247815.1_FicAlb1.5] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000247815.2/ GCA_000247815.2_FicAlb1.5] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Ficedula_albicollis/all_assembly_versions/GCF_000247815.1_FicAlb1.5/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Ficedula_albicollis/all_assembly_versions/GCF_000247815.1_FicAlb1.5/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Ficedula_albicollis/all_assembly_versions/GCA_000247815.2/ GCA_000247815.2_FicAlb1.5] | |||
|- | |- | ||
! 134 | ! 134 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=fr3 fr3] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=fr3 public] | ||
| Takifugu_rubripes | | Takifugu_rubripes | ||
| Fugu | | Fugu | ||
| Line 1,130: | Line 1,241: | ||
| Northern fulmar | | Northern fulmar | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000690835.1/ GCF_000690835.1_ASM69083v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000690835.1/ GCF_000690835.1_ASM69083v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000690835.1/ GCA_000690835.1_ASM69083v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Fulmarus_glacialis/all_assembly_versions/GCF_000690835.1_ASM69083v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Fulmarus_glacialis/all_assembly_versions/GCF_000690835.1_ASM69083v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Fulmarus_glacialis/all_assembly_versions/GCA_000690835.1/ GCA_000690835.1_ASM69083v1] | |||
|- | |- | ||
! 136 | ! 136 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=galGal4 galGal4] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=galGal4 public] | ||
| Gallus_gallus | | Gallus_gallus | ||
| Chicken | | Chicken | ||
| Line 1,163: | Line 1,277: | ||
! 140 | ! 140 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 geoFor1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=geoFor1 public] | ||
| Geospiza_fortis | | Geospiza_fortis | ||
| Medium ground finch | | Medium ground finch | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000277835.1/ GCF_000277835.1_GeoFor_1.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000277835.1/ GCF_000277835.1_GeoFor_1.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000277835.1/ GCA_000277835.1_GeoFor_1.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Geospiza_fortis/all_assembly_versions/GCF_000277835.1_GeoFor_1.0/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Geospiza_fortis/all_assembly_versions/GCF_000277835.1_GeoFor_1.0/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Geospiza_fortis/all_assembly_versions/GCA_000277835.1/ GCA_000277835.1_GeoFor_1.0] | |||
|- | |- | ||
! 141 | ! 141 | ||
| Line 1,174: | Line 1,291: | ||
| White-tailed eagle | | White-tailed eagle | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000691405.1/ GCF_000691405.1_ASM69140v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000691405.1/ GCF_000691405.1_ASM69140v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000691405.1/ GCA_000691405.1_ASM69140v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Haliaeetus_albicilla/all_assembly_versions/GCF_000691405.1_ASM69140v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Haliaeetus_albicilla/all_assembly_versions/GCF_000691405.1_ASM69140v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Haliaeetus_albicilla/all_assembly_versions/GCA_000691405.1/ GCA_000691405.1_ASM69140v1] | |||
|- | |- | ||
! 142 | ! 142 | ||
| Line 1,181: | Line 1,301: | ||
| Bald eagle | | Bald eagle | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000737465.1/ GCF_000737465.1_Haliaeetus_leucocephalus-4.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000737465.1/ GCF_000737465.1_Haliaeetus_leucocephalus-4.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000737465.1/ GCA_000737465.1_Haliaeetus_leucocephalus-4.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Haliaeetus_leucocephalus/all_assembly_versions/GCF_000737465.1_Haliaeetus_leucocephalus-4.0/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Haliaeetus_leucocephalus/all_assembly_versions/GCF_000737465.1_Haliaeetus_leucocephalus-4.0/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Haliaeetus_leucocephalus/all_assembly_versions/GCA_000737465.1/ GCA_000737465.1_Haliaeetus_leucocephalus-4.0] | |||
|- | |- | ||
! 143 | ! 143 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=latCha1 latCha1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=latCha1 public] | ||
| Latimeria_chalumnae | | Latimeria_chalumnae | ||
| Coelacanth | | Coelacanth | ||
| Line 1,196: | Line 1,319: | ||
| Cuckoo roller | | Cuckoo roller | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000691785.1/ GCF_000691785.1_ASM69178v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000691785.1/ GCF_000691785.1_ASM69178v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000691785.1/ GCA_000691785.1_ASM69178v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Leptosomus_discolor/all_assembly_versions/GCF_000691785.1_ASM69178v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Leptosomus_discolor/all_assembly_versions/GCF_000691785.1_ASM69178v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Leptosomus_discolor/all_assembly_versions/GCA_000691785.1/ GCA_000691785.1_ASM69178v1] | |||
|- | |- | ||
! 145 | ! 145 | ||
| Line 1,203: | Line 1,329: | ||
| Zebra mbuna | | Zebra mbuna | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000238955.1/ GCF_000238955.1_MetZeb1.1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000238955.1/ GCF_000238955.1_MetZeb1.1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000238955.2/ GCA_000238955.2_MetZeb1.1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Maylandia_zebra/all_assembly_versions/GCF_000238955.1_MetZeb1.1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Maylandia_zebra/all_assembly_versions/GCF_000238955.1_MetZeb1.1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Maylandia_zebra/all_assembly_versions/GCA_000238955.2/ GCA_000238955.2_MetZeb1.1] | |||
|- | |- | ||
! 146 | ! 146 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 melUnd1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=melUnd1 public] | ||
| Melopsittacus_undulatus | | Melopsittacus_undulatus | ||
| Budgerigar | | Budgerigar | ||
| Line 1,218: | Line 1,347: | ||
| Northern carmine bee-eater | | Northern carmine bee-eater | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000691845.1/ GCF_000691845.1_ASM69184v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000691845.1/ GCF_000691845.1_ASM69184v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000691845.1/ GCA_000691845.1_ASM69184v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Merops_nubicus/all_assembly_versions/GCF_000691845.1_ASM69184v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Merops_nubicus/all_assembly_versions/GCF_000691845.1_ASM69184v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Merops_nubicus/all_assembly_versions/GCA_000691845.1/ GCA_000691845.1_ASM69184v1] | |||
|- | |- | ||
! 148 | ! 148 | ||
| Line 1,225: | Line 1,357: | ||
| Brown roatelo | | Brown roatelo | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000695765.1/ GCF_000695765.1_ASM69576v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000695765.1/ GCF_000695765.1_ASM69576v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000695765.1/ GCA_000695765.1_ASM69576v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Mesitornis_unicolor/all_assembly_versions/GCF_000695765.1_ASM69576v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Mesitornis_unicolor/all_assembly_versions/GCF_000695765.1_ASM69576v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Mesitornis_unicolor/all_assembly_versions/GCA_000695765.1/ GCA_000695765.1_ASM69576v1] | |||
|- | |- | ||
! 149 | ! 149 | ||
| Line 1,246: | Line 1,381: | ||
| Hoatzin | | Hoatzin | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000692075.1/ GCF_000692075.1_ASM69207v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000692075.1/ GCF_000692075.1_ASM69207v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000692075.1/ GCA_000692075.1_ASM69207v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Opisthocomus_hoazin/all_assembly_versions/GCF_000692075.1_ASM69207v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Opisthocomus_hoazin/all_assembly_versions/GCF_000692075.1_ASM69207v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Opisthocomus_hoazin/all_assembly_versions/GCA_000692075.1/ GCA_000692075.1_ASM69207v1] | |||
|- | |- | ||
! 152 | ! 152 | ||
| style="color:red;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 oreNil2] | | style="color:red;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 oreNil2] | ||
(has dups: 170) | (has dups: 170) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=oreNil2 public] | ||
| Oreochromis_niloticus | | Oreochromis_niloticus | ||
| Nile tilapia | | Nile tilapia | ||
| Line 1,263: | Line 1,401: | ||
| Dalmatian pelican | | Dalmatian pelican | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000687375.1/ GCF_000687375.1_ASM68737v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000687375.1/ GCF_000687375.1_ASM68737v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000687375.1/ GCA_000687375.1_ASM68737v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Pelecanus_crispus/all_assembly_versions/GCF_000687375.1_ASM68737v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Pelecanus_crispus/all_assembly_versions/GCF_000687375.1_ASM68737v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Pelecanus_crispus/all_assembly_versions/GCA_000687375.1/ GCA_000687375.1_ASM68737v1] | |||
|- | |- | ||
! 154 | ! 154 | ||
| Line 1,277: | Line 1,418: | ||
| Great cormorant | | Great cormorant | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000708925.1/ GCF_000708925.1_ASM70892v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000708925.1/ GCF_000708925.1_ASM70892v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000708925.1/ GCA_000708925.1_ASM70892v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Phalacrocorax_carbo/all_assembly_versions/GCF_000708925.1_ASM70892v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Phalacrocorax_carbo/all_assembly_versions/GCF_000708925.1_ASM70892v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Phalacrocorax_carbo/all_assembly_versions/GCA_000708925.1/ GCA_000708925.1_ASM70892v1] | |||
|- | |- | ||
! 156 | ! 156 | ||
| Line 1,284: | Line 1,428: | ||
| White-tailed tropicbird | | White-tailed tropicbird | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000687285.1/ GCF_000687285.1_ASM68728v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000687285.1/ GCF_000687285.1_ASM68728v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000687285.1/ GCA_000687285.1_ASM68728v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Phaethon_lepturus/all_assembly_versions/GCF_000687285.1_ASM68728v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Phaethon_lepturus/all_assembly_versions/GCF_000687285.1_ASM68728v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Phaethon_lepturus/all_assembly_versions/GCA_000687285.1/ GCA_000687285.1_ASM68728v1] | |||
|- | |- | ||
! 157 | ! 157 | ||
| Line 1,291: | Line 1,438: | ||
| Downy woodpecker | | Downy woodpecker | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000699005.1/ GCF_000699005.1_ASM69900v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000699005.1/ GCF_000699005.1_ASM69900v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000699005.1/ GCA_000699005.1_ASM69900v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Picoides_pubescens/all_assembly_versions/GCF_000699005.1_ASM69900v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Picoides_pubescens/all_assembly_versions/GCF_000699005.1_ASM69900v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Picoides_pubescens/all_assembly_versions/GCA_000699005.1/ GCA_000699005.1_ASM69900v1] | |||
|- | |- | ||
! 158 | ! 158 | ||
| Line 1,298: | Line 1,448: | ||
| Amazon molly | | Amazon molly | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000485575.1/ GCF_000485575.1_Poecilia_formosa-5.1.2] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000485575.1/ GCF_000485575.1_Poecilia_formosa-5.1.2] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000485575.1/ GCA_000485575.1_Poecilia_formosa-5.1.2] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Poecilia_formosa/all_assembly_versions/GCF_000485575.1_Poecilia_formosa-5.1.2/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Poecilia_formosa/all_assembly_versions/GCF_000485575.1_Poecilia_formosa-5.1.2/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Poecilia_formosa/all_assembly_versions/GCA_000485575.1/ GCA_000485575.1_Poecilia_formosa-5.1.2] | |||
|- | |- | ||
! 159 | ! 159 | ||
| Line 1,312: | Line 1,465: | ||
| Yellow-throated sandgrouse | | Yellow-throated sandgrouse | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000699245.1/ GCF_000699245.1_ASM69924v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000699245.1/ GCF_000699245.1_ASM69924v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000699245.1/ GCA_000699245.1_ASM69924v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Pterocles_gutturalis/all_assembly_versions/GCF_000699245.1_ASM69924v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Pterocles_gutturalis/all_assembly_versions/GCF_000699245.1_ASM69924v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Pterocles_gutturalis/all_assembly_versions/GCA_000699245.1/ GCA_000699245.1_ASM69924v1] | |||
|- | |- | ||
! 161 | ! 161 | ||
| Line 1,337: | Line 1,493: | ||
! 164 | ! 164 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 taeGut2] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 taeGut2] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=taeGut2 public] | ||
| Taeniopygia_guttata | | Taeniopygia_guttata | ||
| Zebra finch | | Zebra finch | ||
| Line 1,348: | Line 1,504: | ||
| Red crested turaco | | Red crested turaco | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000709365.1/ GCF_000709365.1_ASM70936v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000709365.1/ GCF_000709365.1_ASM70936v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000709365.1/ GCA_000709365.1_ASM70936v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Tauraco_erythrolophus/all_assembly_versions/GCF_000709365.1_ASM70936v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Tauraco_erythrolophus/all_assembly_versions/GCF_000709365.1_ASM70936v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Tauraco_erythrolophus/all_assembly_versions/GCA_000709365.1/ GCA_000709365.1_ASM70936v1] | |||
|- | |- | ||
! 166 | ! 166 | ||
| Line 1,355: | Line 1,514: | ||
| notFound | | notFound | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_001077635.1/ GCF_001077635.1_Thamnophis_sirtalis-6.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_001077635.1/ GCF_001077635.1_Thamnophis_sirtalis-6.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_001077635.2/ GCA_001077635.2_Thamnophis_sirtalis-6.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Thamnophis_sirtalis/all_assembly_versions/GCF_001077635.1_Thamnophis_sirtalis-6.0/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Thamnophis_sirtalis/all_assembly_versions/GCF_001077635.1_Thamnophis_sirtalis-6.0/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Thamnophis_sirtalis/all_assembly_versions/GCA_001077635.2/ GCA_001077635.2_Thamnophis_sirtalis-6.0] | |||
|- | |- | ||
! 167 | ! 167 | ||
| Line 1,362: | Line 1,524: | ||
| White throated tinamou | | White throated tinamou | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000705375.1/ GCF_000705375.1_ASM70537v2] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000705375.1/ GCF_000705375.1_ASM70537v2] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000705375.2/ GCA_000705375.2_ASM70537v2] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Tinamus_guttatus/all_assembly_versions/GCF_000705375.1_ASM70537v2/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Tinamus_guttatus/all_assembly_versions/GCF_000705375.1_ASM70537v2/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Tinamus_guttatus/all_assembly_versions/GCA_000705375.2/ GCA_000705375.2_ASM70537v2] | |||
|- | |- | ||
! 168 | ! 168 | ||
| Line 1,369: | Line 1,534: | ||
| Barn owl | | Barn owl | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000687205.1/ GCF_000687205.1_ASM68720v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000687205.1/ GCF_000687205.1_ASM68720v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000687205.1/ GCA_000687205.1_ASM68720v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Tyto_alba/all_assembly_versions/GCF_000687205.1_ASM68720v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Tyto_alba/all_assembly_versions/GCF_000687205.1_ASM68720v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Tyto_alba/all_assembly_versions/GCA_000687205.1/ GCA_000687205.1_ASM68720v1] | |||
|- | |- | ||
! 169 | ! 169 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 public] | ||
| Xenopus_Silurana_tropicalis<br>Xenopus tropicalis | | Xenopus_Silurana_tropicalis<br>Xenopus tropicalis | ||
| X. tropicalis | | X. tropicalis | ||
| Line 1,381: | Line 1,549: | ||
! 170 | ! 170 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 xenTro7] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=xenTro7 public] | ||
| Xenopus_tropicalis | | Xenopus_tropicalis | ||
| X. tropicalis | | X. tropicalis | ||
| Line 1,399: | Line 1,567: | ||
| White-throated sparrow | | White-throated sparrow | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000385455.1/ GCF_000385455.1_Zonotrichia_albicollis-1.0.1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000385455.1/ GCF_000385455.1_Zonotrichia_albicollis-1.0.1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000385455.1/ GCA_000385455.1_Zonotrichia_albicollis-1.0.1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Zonotrichia_albicollis/all_assembly_versions/GCF_000385455.1_Zonotrichia_albicollis-1.0.1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Zonotrichia_albicollis/all_assembly_versions/GCF_000385455.1_Zonotrichia_albicollis-1.0.1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Zonotrichia_albicollis/all_assembly_versions/GCA_000385455.1/ GCA_000385455.1_Zonotrichia_albicollis-1.0.1] | |||
|- | |- | ||
! 173 | ! 173 | ||
| Line 1,461: | Line 1,632: | ||
| Adelie penguin | | Adelie penguin | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000699105.1/ GCF_000699105.1_ASM69910v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000699105.1/ GCF_000699105.1_ASM69910v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000699105.1/ GCA_000699105.1_ASM69910v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Pygoscelis_adeliae/all_assembly_versions/GCF_000699105.1_ASM69910v1/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Pygoscelis_adeliae/all_assembly_versions/GCF_000699105.1_ASM69910v1/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Pygoscelis_adeliae/all_assembly_versions/GCA_000699105.1/ GCA_000699105.1_ASM69910v1] | |||
|- | |- | ||
! 180 | ! 180 | ||
| Line 1,469: | Line 1,643: | ||
| Northern pike | | Northern pike | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000721915.1/ GCF_000721915.1_EsoLuc1.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000721915.1/ GCF_000721915.1_EsoLuc1.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000721915.1/ GCA_000721915.1_EsoLuc1.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Esox_lucius/all_assembly_versions/GCF_000721915.1_EsoLuc1.0/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Esox_lucius/all_assembly_versions/GCF_000721915.1_EsoLuc1.0/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Esox_lucius/all_assembly_versions/GCA_000721915.1/ GCA_000721915.1_EsoLuc1.0] | |||
|- | |- | ||
! 181 | ! 181 | ||
| Line 1,477: | Line 1,654: | ||
| Sheepshead minnow | | Sheepshead minnow | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000732505.1/ GCF_000732505.1_C_variegatus-1.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000732505.1/ GCF_000732505.1_C_variegatus-1.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000732505.1/ GCA_000732505.1_C_variegatus-1.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Cyprinodon_variegatus/all_assembly_versions/GCF_000732505.1_C_variegatus-1.0/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Cyprinodon_variegatus/all_assembly_versions/GCF_000732505.1_C_variegatus-1.0/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Cyprinodon_variegatus/all_assembly_versions/GCA_000732505.1/ GCA_000732505.1_C_variegatus-1.0] | |||
|- | |- | ||
! 182 | ! 182 | ||
| Line 1,493: | Line 1,673: | ||
| Golden eagle | | Golden eagle | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000766835.1/ GCF_000766835.1_Aquila_chrysaetos-1.0.2] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000766835.1/ GCF_000766835.1_Aquila_chrysaetos-1.0.2] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000766835.1/ GCA_000766835.1_Aquila_chrysaetos-1.0.2] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Aquila_chrysaetos/all_assembly_versions/GCF_000766835.1_Aquila_chrysaetos-1.0.2/ vertebrate_other] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/Aquila_chrysaetos/all_assembly_versions/GCF_000766835.1_Aquila_chrysaetos-1.0.2/ vertebrate_other] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/vertebrate_other/Aquila_chrysaetos/all_assembly_versions/GCA_000766835.1/ GCA_000766835.1_Aquila_chrysaetos-1.0.2] | |||
|- | |- | ||
! 184 | ! 184 | ||
| Line 1,522: | Line 1,705: | ||
| style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1] | | style="color:green;" | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=melGal1 melGal1] | ||
(near match: 5890 of 5891) | (near match: 5890 of 5891) | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=melGal1 public] | ||
| Meleagris_gallopavo | | Meleagris_gallopavo | ||
| Turkey | | Turkey | ||
| Line 1,590: | Line 1,773: | ||
| notFound | | notFound | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000204515.1/ GCF_000204515.1_Aech_3.9] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000204515.1/ GCF_000204515.1_Aech_3.9] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000204515.1/ GCA_000204515.1_Aech_3.9] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Acromyrmex_echinatior/all_assembly_versions/GCF_000204515.1_Aech_3.9/ invertebrate] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Acromyrmex_echinatior/all_assembly_versions/GCF_000204515.1_Aech_3.9/ invertebrate] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Acromyrmex_echinatior/all_assembly_versions/GCA_000204515.1/ GCA_000204515.1_Aech_3.9] | |||
|- | |- | ||
! 196 | ! 196 | ||
| Line 1,611: | Line 1,797: | ||
| C. remanei | | C. remanei | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000149515.1/ GCF_000149515.1_ASM14951v1] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000149515.1/ GCF_000149515.1_ASM14951v1] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000149515.1/ GCA_000149515.1_ASM14951v1] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Caenorhabditis_remanei/all_assembly_versions/GCF_000149515.1_ASM14951v1/ invertebrate] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Caenorhabditis_remanei/all_assembly_versions/GCF_000149515.1_ASM14951v1/ invertebrate] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Caenorhabditis_remanei/all_assembly_versions/GCA_000149515.1/ GCA_000149515.1_ASM14951v1] | |||
|- | |- | ||
! 199 | ! 199 | ||
| Line 1,618: | Line 1,807: | ||
| notFound | | notFound | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000147175.1/ GCF_000147175.1_CamFlo_1.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000147175.1/ GCF_000147175.1_CamFlo_1.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000147175.1/ GCA_000147175.1_CamFlo_1.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Camponotus_floridanus/all_assembly_versions/GCF_000147175.1_CamFlo_1.0/ invertebrate] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Camponotus_floridanus/all_assembly_versions/GCF_000147175.1_CamFlo_1.0/ invertebrate] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Camponotus_floridanus/all_assembly_versions/GCA_000147175.1/ GCA_000147175.1_CamFlo_1.0] | |||
|- | |- | ||
! 200 | ! 200 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce11 ce11] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=ce11 ce11] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=ce11 public] | ||
| Caenorhabditis_elegans | | Caenorhabditis_elegans | ||
| C. elegans | | C. elegans | ||
| Line 1,633: | Line 1,825: | ||
| notFound | | notFound | ||
| [http://www.ncbi.nlm.nih.gov/assembly/GCF_000611835.1/ GCF_000611835.1_CerBir1.0] | | [http://www.ncbi.nlm.nih.gov/assembly/GCF_000611835.1/ GCF_000611835.1_CerBir1.0] | ||
[http://www.ncbi.nlm.nih.gov/assembly/GCA_000611835.1/ GCA_000611835.1_CerBir1.0] | |||
| [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Cerapachys_biroi/all_assembly_versions/GCF_000611835.1_CerBir1.0/ invertebrate] | | [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/Cerapachys_biroi/all_assembly_versions/GCF_000611835.1_CerBir1.0/ invertebrate] | ||
[ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/invertebrate/Cerapachys_biroi/all_assembly_versions/GCA_000611835.1/ GCA_000611835.1_CerBir1.0] | |||
|- | |- | ||
! 202 | ! 202 | ||
| Line 1,644: | Line 1,839: | ||
! 203 | ! 203 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm6 dm6] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=dm6 dm6] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=dm6 public] | ||
| Drosophila_melanogaster | | Drosophila_melanogaster | ||
| D. melanogaster | | D. melanogaster | ||
| Line 1,731: | Line 1,926: | ||
! 215 | ! 215 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPer1 droPer1] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=droPer1 droPer1] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=droPer1 public] | ||
| Drosophila_persimilis | | Drosophila_persimilis | ||
| D. persimilis | | D. persimilis | ||
| Line 1,878: | Line 2,073: | ||
! 235 | ! 235 | ||
| [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer3 sacCer3] | | [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=sacCer3 sacCer3] | ||
[http://genome | [http://genome.ucsc.edu/cgi-bin/hgTracks?db=sacCer3 public] | ||
| Saccharomyces_cerevisiae | | Saccharomyces_cerevisiae | ||
| S. cerevisiae | | S. cerevisiae | ||
Revision as of 18:26, 18 August 2016
The correspondences show here are exact, subset, and near match. NCBI assemblies with no equivalent UCSC database are listed.
The columns can be sorted. Click on the small arrow icon next to the column header label.
The external links go to:
- test browser - genome-test.soe.ucsc.edu genome browser
- public browser - when available the genome.ucsc.edu browser
- RefSeq assembly - assembly information page at NCBI for the refseq version
- Genbank assembly - assembly information page at NCBI when equivalent, genbank version
- RefSeq FTP - ftp directory at NCBI where the RefSeq assembly can be obtained
- Genbank FTP - ftp directory for the genbank version when equivalent
Note about the (has dups N) indication.
Some older assemblies have entire sequences duplicated in multiple contigs
in both the NCBI assembly and the UCSC assembly. Most newer UCSC assemblies
have removed the duplicate contigs, and newer NCBI assemblies now also
remove the duplicate contigs. The N indicates how many duplicate
sequences are in the assembly. These duplicate contigs will cause
confusion when coordinating chromosome names.
Note about the (subset N of M) indication. When all contigs of one assembly are completely found in the other assembly, it is marked as a (subset N of M). This is often the result of one assembly including a chrM/chrMT sequence, or duplicate sequences removed from one of the assemblies. The N of M counts the number of sequences in the subset vs. the superset after duplicate sequences have been removed.
Note about the (near match N of M) indication. When almost all contigs of one assembly are completely found in the other assembly, it is marked as a (near match N of M). This is often the result of different sequences for chrM/chrMT, included in each of the assemblies, or a different combination rearrangement of sequences in one assembly. For example monDom5 at UCSC combines all unplaced contigs into a single chrUn sequence whereas NCBI keeps those contigs as separate sequences. The N of M counts the number of sequences identical vs. the total sequences in the other assembly. The limit in this notation is a maximum difference of two sequences in the smaller assembly, and only for vertebrate_mammalian and vertebrate_other assemblies.
NCBI assemblies for the sub-groups vertebrate_mammalian and
vertebrate_other with no equivalent UCSC database are indicated
as (N sequences) where N is
the number of sequences in the NCBI assembly.
