UCSC to RefSeq correspondence

The correspondence indicated here is exact. Each sequence in both assemblies id identical. Future improvement to this table will indicate subsets, when one assembly is a complete subset of the other, and partial matches when one assembly is mostly identical to the other.

The external links go to:

• UCSC browser - genome-test genome browser
• Entrez assembly - assembly information page at NCBI
• NCBI FTP - ftp directory at NCBI where the assembly can be obtained

UCSC to Genbank assembly accession correspondence

count	UCSC browser	scientific name(s)	common name	Entrez assembly	NCBI FTP
1	CHM1	mole Homo sapiens	Homo sapiens hydatidiform mole assembly chm1	GCF_000306695.2_CHM1_1.1	vertebrate_mammalian
2	ailMel1	Ailuropoda melanoleuca	Panda	GCF_000004335.2_AilMel_1.0	vertebrate_mammalian
3	balAcu1	Balaenoptera acutorostrata scammoni Balaenoptera acutorostrata	Minke whale	GCF_000493695.1_BalAcu1.0	vertebrate_mammalian
4	bosTau8	Bos taurus	Cow	GCF_000003055.5_Bos_taurus_UMD_3.1.1	vertebrate_mammalian
5	bubBub1	Bubalus bubalis	Water buffalo	GCF_000471725.1_UMD_CASPUR_WB_2.0	vertebrate_mammalian
6	calJac3	Callithrix jacchus	Marmoset	GCF_000004665.1_Callithrix_jacchus-3.2	vertebrate_mammalian
7	camFer1	Camelus ferus	Bactrian camel	GCF_000311805.1_CB1	vertebrate_mammalian
8	canFam3	Canis lupus familiaris Canis lupus	Dog	GCF_000002285.3_CanFam3.1	vertebrate_mammalian
9	capHir1	Capra hircus	Domestic goat	GCF_000317765.1_CHIR_1.0	vertebrate_mammalian
10	cavPor3	Cavia porcellus	Guinea pig	GCF_000151735.1_Cavpor3.0	vertebrate_mammalian
11	cerSim1	Ceratotherium simum	White rhinoceros	GCF_000283155.1_CerSimSim1.0	vertebrate_mammalian
12	chlSab2	Chlorocebus sabaeus	Green monkey	GCF_000409795.2_Chlorocebus_sabeus_1.1	vertebrate_mammalian
13	chrAsi1	Chrysochloris asiatica	Cape golden mole	GCF_000296735.1_ChrAsi1.0	vertebrate_mammalian
14	colAng1	Colobus angolensis palliatus Colobus angolensis	Angolan colobus	GCF_000951035.1_Cang.pa_1.0	vertebrate_mammalian
15	dasNov3	Dasypus novemcinctus	Armadillo	GCF_000208655.1_Dasnov3.0	vertebrate_mammalian
16	echTel2	Echinops telfairi	Tenrec	GCF_000313985.1_EchTel2.0	vertebrate_mammalian
17	eleEdw1	Elephantulus edwardii	Cape elephant shrew	GCF_000299155.1_EleEdw1.0	vertebrate_mammalian
18	eriEur2	Erinaceus europaeus	Hedgehog	GCF_000296755.1_EriEur2.0	vertebrate_mammalian
19	felCat5	Felis catus	Cat	GCF_000181335.1_Felis_catus-6.2	vertebrate_mammalian
20	felCat8	Felis catus	Cat	GCF_000181335.2_Felis_catus_8.0	vertebrate_mammalian
21	galVar1	Galeopterus variegatus	Malayan flying lemur	GCF_000696425.1_G_variegatus-3.0.2	vertebrate_mammalian
22	hetGla2	Heterocephalus glaber	Naked mole-rat	GCF_000247695.1_HetGla_female_1.0	vertebrate_mammalian
23	hg38	Homo sapiens	Human	GCF_000001405.26_GRCh38	vertebrate_mammalian
24	lepWed1	Leptonychotes weddellii	Weddell seal	GCF_000349705.1_LepWed1.0	vertebrate_mammalian
25	lipVex1	Lipotes vexillifer	Yangtze river dolphin	GCF_000442215.1_Lipotes_vexillifer_v1	vertebrate_mammalian
26	macFas5	Macaca fascicularis	Crab-eating macaque	GCF_000364345.1_Macaca_fascicularis_5.0	vertebrate_mammalian
27	mesAur1	Mesocricetus auratus	Golden hamster	GCF_000349665.1_MesAur1.0	vertebrate_mammalian
28	micMur2	Microcebus murinus	Mouse lemur	GCF_000165445.1_Mmur_2.0	vertebrate_mammalian
29	micOch1	Microtus ochrogaster	Prairie vole	GCF_000317375.1_MicOch1.0	vertebrate_mammalian
30	myoBra1	Myotis brandtii	Brandt's myotis (bat)	GCF_000412655.1_ASM41265v1	vertebrate_mammalian
31	myoDav1	Myotis davidii	David's myotis (bat)	GCF_000327345.1_ASM32734v1	vertebrate_mammalian
32	myoLuc2	Myotis lucifugus	Microbat	GCF_000147115.1_Myoluc2.0	vertebrate_mammalian
33	nanGal1	Nannospalax galili	Upper Galilee mountains blind mole rat	GCF_000622305.1_S.galili_v1.0	vertebrate_mammalian
34	orcOrc1	Orcinus orca	Killer whale	GCF_000331955.2_Oorc_1.1	vertebrate_mammalian
35	oryAfe1	Orycteropus afer afer Orycteropus afer	Aardvark	GCF_000298275.1_OryAfe1.0	vertebrate_mammalian
36	otoGar3	Otolemur garnettii	Bushbaby	GCF_000181295.1_OtoGar3	vertebrate_mammalian
37	oviAri3	Ovis aries	Sheep	GCF_000298735.1_Oar_v3.1	vertebrate_mammalian
38	panHod1	Pantholops hodgsonii	Tibetan antelope	GCF_000400835.1_PHO1.0	vertebrate_mammalian
39	panPan1	Pan paniscus	Bonobo	GCF_000258655.1_panpan1	vertebrate_mammalian
40	panPan2	Pan paniscus	Bonobo	GCF_000258655.2_panpan1.1	vertebrate_mammalian
41	panTig1	Panthera tigris altaica Panthera tigris	Amur tiger	GCF_000464555.1_PanTig1.0	vertebrate_mammalian
42	panTro4	Pan troglodytes	Chimp	GCF_000001515.6_Pan_troglodytes-2.1.4	vertebrate_mammalian
43	panTro5	Pan troglodytes	Chimp	GCF_000001515.7_Pan_tro_3.0	vertebrate_mammalian
44	papAnu2	Papio anubis	Baboon	GCF_000264685.1_Panu_2.0	vertebrate_mammalian
45	perManBai1	Peromyscus maniculatus bairdii Peromyscus maniculatus	Prairie deer mouse	GCF_000500345.1_Pman_1.0	vertebrate_mammalian
46	phyCat1	Physeter catodon	Sperm whale	GCF_000472045.1_Physeter_macrocephalus-2.0.2	vertebrate_mammalian
47	rheMac8	Macaca mulatta	Rhesus	GCF_000772875.2_Mmul_8.0.1	vertebrate_mammalian
48	rhiRox1	Rhinopithecus roxellana	Golden snub-nosed monkey	GCF_000769185.1_Rrox_v1	vertebrate_mammalian
49	rouAeg1	Rousettus aegyptiacus	Egyptian rousette	GCF_001466805.2_Raegyp2.0	vertebrate_mammalian
50	sarHar1	Sarcophilus harrisii	Tasmanian devil	GCF_000189315.1_Devil_ref_v7.0	vertebrate_mammalian
51	sorAra2	Sorex araneus	Shrew	GCF_000181275.1_SorAra2.0	vertebrate_mammalian
52	speTri2	Spermophilus tridecemlineatus Ictidomys tridecemlineatus	Squirrel	GCF_000236235.1_SpeTri2.0	vertebrate_mammalian
53	susScr3	Sus scrofa	Pig	GCF_000003025.5_Sscrofa10.2	vertebrate_mammalian
54	tarSyr2	Tarsius syrichta Carlito syrichta	Tarsier	GCF_000164805.1_Tarsius_syrichta-2.0.1	vertebrate_mammalian
55	triMan1	Trichechus manatus latirostris Trichechus manatus	Manatee	GCF_000243295.1_TriManLat1.0	vertebrate_mammalian
56	tupChi1	Tupaia chinensis	Chinese tree shrew	GCF_000334495.1_TupChi_1.0	vertebrate_mammalian
57	ursMar1	Ursus maritimus	Polar bear	GCF_000687225.1_UrsMar_1.0	vertebrate_mammalian
58	allMis1	Alligator mississippiensis	American alligator	GCF_000281125.1_allMis0.2	vertebrate_other
59	allSin1	Alligator sinensis	Chinese alligator	GCF_000455745.1_ASM45574v1	vertebrate_other
60	anaPla1	Anas platyrhynchos	Mallard duck	GCF_000355885.1_BGI_duck_1.0	vertebrate_other
61	anoCar2	Anolis carolinensis	Lizard	GCF_000090745.1_AnoCar2.0	vertebrate_other
62	apaVit1	Apaloderma vittatum	Bar tailed trogon	GCF_000703405.1_ASM70340v1	vertebrate_other
63	aptFor1	Aptenodytes forsteri	Emperor penguin	GCF_000699145.1_ASM69914v1	vertebrate_other
64	bucRhi1	Buceros rhinoceros silvestris Buceros rhinoceros	Rhinoceros hornbill	GCF_000710305.1_ASM71030v1	vertebrate_other
65	calAnn1	Calypte anna	Anna's hummingbird	GCF_000699085.1_ASM69908v1	vertebrate_other
66	calMil1	Callorhinchus milii	Elephant shark	GCF_000165045.1_Callorhinchus_milii-6.1.3	vertebrate_other
67	capCar1	Caprimulgus carolinensis	Chuck-will's-widow	GCF_000700745.1_ASM70074v1	vertebrate_other
68	carCri1	Cariama cristata	Red-legged seriema	GCF_000690535.1_ASM69053v1	vertebrate_other
69	chaVoc2	Charadrius vociferus	Killdeer	GCF_000708025.1_ASM70802v2	vertebrate_other
70	cheMyd1	Chelonia mydas	Green seaturtle	GCF_000344595.1_CheMyd_1.0	vertebrate_other
71	chlUnd1	Chlamydotis undulata macqueenii Chlamydotis macqueenii	Houbara bustard	GCF_000695195.1_ASM69519v1	vertebrate_other
72	colLiv1	Columba livia	Rock pigeon	GCF_000337935.1_Cliv_1.0	vertebrate_other
73	colStr1	Colius striatus	Speckled mousebird	GCF_000690715.1_ASM69071v1	vertebrate_other
74	corBra1	Corvus brachyrhynchos	American crow	GCF_000691975.1_ASM69197v1	vertebrate_other
75	cucCan1	Cuculus canorus	Common cuckoo	GCF_000709325.1_ASM70932v1	vertebrate_other
76	cynSem1	Cynoglossus semilaevis	Tongue sole	GCF_000523025.1_Cse_v1.0	vertebrate_other
77	danRer10	Danio rerio	Zebrafish	GCF_000002035.5_GRCz10	vertebrate_other
78	danRer7	Danio rerio	Zebrafish	GCF_000002035.4_Zv9	vertebrate_other
79	egrGar1	Egretta garzetta	Little egret	GCF_000687185.1_ASM68718v1	vertebrate_other
80	eurHel1	Eurypyga helias	Sunbittern	GCF_000690775.1_ASM69077v1	vertebrate_other
81	falChe1	Falco cherrug	Saker falcon	GCF_000337975.1_F_cherrug_v1.0	vertebrate_other
82	falPer1	Falco peregrinus	Peregrine falcon	GCF_000337955.1_F_peregrinus_v1.0	vertebrate_other
83	ficAlb2	Ficedula albicollis	Collared flycatcher	GCF_000247815.1_FicAlb1.5	vertebrate_other
84	fr3	Takifugu rubripes	Fugu	GCF_000180615.1_FUGU5	vertebrate_other
85	fulGla1	Fulmarus glacialis	Northern fulmar	GCF_000690835.1_ASM69083v1	vertebrate_other
86	galGal4	Gallus gallus	Chicken	GCF_000002315.3_Gallus_gallus-4.0	vertebrate_other
87	galGal5	Gallus gallus	Chicken	GCF_000002315.4_Gallus_gallus-5.0	vertebrate_other
88	gavSte1	Gavia stellata	Red-throated loon	GCF_000690875.1_ASM69087v1	vertebrate_other
89	gekJap0	Gekko japonicus	notFound	GCF_001447785.1_Gekko_japonicus_V1.1	vertebrate_other
90	geoFor1	Geospiza fortis	Medium ground finch	GCF_000277835.1_GeoFor_1.0	vertebrate_other
91	halAlb1	Haliaeetus albicilla	White-tailed eagle	GCF_000691405.1_ASM69140v1	vertebrate_other
92	halLeu1	Haliaeetus leucocephalus	Bald eagle	GCF_000737465.1_Haliaeetus_leucocephalus-4.0	vertebrate_other
93	latCha1	Latimeria chalumnae	Coelacanth	GCF_000225785.1_LatCha1	vertebrate_other
94	lepDis1	Leptosomus discolor	Cuckoo roller	GCF_000691785.1_ASM69178v1	vertebrate_other
95	mayZeb1	Maylandia zebra	Zebra mbuna	GCF_000238955.1_MetZeb1.1	vertebrate_other
96	melUnd1	Melopsittacus undulatus	Budgerigar	GCF_000238935.1_Melopsittacus_undulatus_6.3	vertebrate_other
97	merNub1	Merops nubicus	Northern carmine bee-eater	GCF_000691845.1_ASM69184v1	vertebrate_other
98	mesUni1	Mesitornis unicolor	Brown roatelo	GCF_000695765.1_ASM69576v1	vertebrate_other
99	nipNip1	Nipponia nippon	Crested ibis	GCF_000708225.1_ASM70822v1	vertebrate_other
100	notCor1	Notothenia coriiceps	Black rockcod	GCF_000735185.1_NC01	vertebrate_other
101	opiHoa1	Opisthocomus hoazin	Hoatzin	GCF_000692075.1_ASM69207v1	vertebrate_other
102	oreNil2	Oreochromis niloticus	Nile tilapia	GCF_000188235.2_Orenil1.1	vertebrate_other
103	pelCri1	Pelecanus crispus	Dalmatian pelican	GCF_000687375.1_ASM68737v1	vertebrate_other
104	pelSin1	Pelodiscus sinensis	Chinese softshell turtle	GCF_000230535.1_PelSin_1.0	vertebrate_other
105	phaCar1	Phalacrocorax carbo	Great cormorant	GCF_000708925.1_ASM70892v1	vertebrate_other
106	phaLep1	Phaethon lepturus	White-tailed tropicbird	GCF_000687285.1_ASM68728v1	vertebrate_other
107	picPub1	Picoides pubescens	Downy woodpecker	GCF_000699005.1_ASM69900v1	vertebrate_other
108	poeFor1	Poecilia formosa	Amazon molly	GCF_000485575.1_Poecilia_formosa-5.1.2	vertebrate_other
109	pseHum1	Pseudopodoces humilis	Tibetan ground jay	GCF_000331425.1_PseHum1.0	vertebrate_other
110	pteGut1	Pterocles gutturalis	Yellow-throated sandgrouse	GCF_000699245.1_ASM69924v1	vertebrate_other
111	pytBiv0	Python bivittatus	notFound	GCF_000186305.1_Python_molurus_bivittatus-5.0.2	vertebrate_other
112	pytBiv1	Python bivittatus	Burmese python	GCF_000186305.1_Python_molurus_bivittatus-5.0.2	vertebrate_other
113	strCam1	Struthio camelus australis Struthio camelus	Ostrich	GCF_000698965.1_ASM69896v1	vertebrate_other
114	taeGut2	Taeniopygia guttata	Zebra finch	GCF_000151805.1_Taeniopygia_guttata-3.2.4	vertebrate_other
115	tauEry1	Tauraco erythrolophus	Red crested turaco	GCF_000709365.1_ASM70936v1	vertebrate_other
116	thaSir0	Thamnophis sirtalis	notFound	GCF_001077635.1_Thamnophis_sirtalis-6.0	vertebrate_other
117	tinGut2	Tinamus guttatus	White throated tinamou	GCF_000705375.1_ASM70537v2	vertebrate_other
118	tytAlb1	Tyto alba	Barn owl	GCF_000687205.1_ASM68720v1	vertebrate_other
119	xenTro7	Xenopus tropicalis Xenopus Silurana tropicalis	X. tropicalis	GCF_000004195.2_Xtropicalis_v7	vertebrate_other
120	xenTro7	Xenopus tropicalis	X. tropicalis	GCF_000004195.2_Xtropicalis_v7	vertebrate_other
121	xipMac1	Xiphophorus maculatus	Southern platyfish	GCF_000241075.1_Xiphophorus_maculatus-4.4.2	vertebrate_other
122	zonAlb1	Zonotrichia albicollis	White-throated sparrow	GCF_000385455.1_Zonotrichia_albicollis-1.0.1	vertebrate_other
123	acrEch0	Acromyrmex echinatior	notFound	GCF_000204515.1_Aech_3.9	invertebrate
124	apiMel4	Apis mellifera	A. mellifera	GCF_000002195.4_Amel_4.5	invertebrate
125	attCep0	Atta cephalotes	notFound	GCF_000143395.1_Attacep1.0	invertebrate
126	caeRem4	Caenorhabditis remanei	C. remanei	GCF_000149515.1_ASM14951v1	invertebrate
127	camFlo0	Camponotus floridanus	notFound	GCF_000147175.1_CamFlo_1.0	invertebrate
128	ce11	Caenorhabditis elegans	C. elegans	GCF_000002985.6_WBcel235	invertebrate
129	cerBir0	Cerapachys biroi	notFound	GCF_000611835.1_CerBir1.0	invertebrate
130	ci3	Ciona intestinalis	C. intestinalis	GCF_000224145.1_KH	invertebrate