UCSC to RefSeq correspondence

The correspondence indicated here is exact. Each sequence in both assemblies id identical. Future improvement to this table will indicate subsets, when one assembly is a complete subset of the other, and partial matches when one assembly is mostly identical to the other.

The columns can be sorted. Click on the small arrow icon next to the column header name

The external links go to:

• UCSC browser - genome-test genome browser
• Entrez assembly - assembly information page at NCBI
• NCBI FTP - ftp directory at NCBI where the assembly can be obtained

UCSC to Genbank assembly accession correspondence

count	UCSC browser	scientific name(s)	common name	Entrez assembly	NCBI FTP
1	CHM1	mole Homo sapiens	Homo sapiens hydatidiform mole assembly chm1	GCF_000306695.2_CHM1_1.1	vertebrate_mammalian
2	ailMel1	Ailuropoda melanoleuca	Panda	GCF_000004335.2_AilMel_1.0	vertebrate_mammalian
3	balAcu1	Balaenoptera acutorostrata scammoni Balaenoptera acutorostrata	Minke whale	GCF_000493695.1_BalAcu1.0	vertebrate_mammalian
4	bosTau8	Bos taurus	Cow	GCF_000003055.5_Bos_taurus_UMD_3.1.1	vertebrate_mammalian
5	bubBub1	Bubalus bubalis	Water buffalo	GCF_000471725.1_UMD_CASPUR_WB_2.0	vertebrate_mammalian
6	calJac3	Callithrix jacchus	Marmoset	GCF_000004665.1_Callithrix_jacchus-3.2	vertebrate_mammalian
7	camFer1	Camelus ferus	Bactrian camel	GCF_000311805.1_CB1	vertebrate_mammalian
8	canFam3	Canis lupus familiaris Canis lupus	Dog	GCF_000002285.3_CanFam3.1	vertebrate_mammalian
9	capHir1	Capra hircus	Domestic goat	GCF_000317765.1_CHIR_1.0	vertebrate_mammalian
10	cavPor3	Cavia porcellus	Guinea pig	GCF_000151735.1_Cavpor3.0	vertebrate_mammalian
11	cerSim1	Ceratotherium simum	White rhinoceros	GCF_000283155.1_CerSimSim1.0	vertebrate_mammalian
12	chlSab2	Chlorocebus sabaeus	Green monkey	GCF_000409795.2_Chlorocebus_sabeus_1.1	vertebrate_mammalian
13	chrAsi1	Chrysochloris asiatica	Cape golden mole	GCF_000296735.1_ChrAsi1.0	vertebrate_mammalian
14	colAng1	Colobus angolensis palliatus Colobus angolensis	Angolan colobus	GCF_000951035.1_Cang.pa_1.0	vertebrate_mammalian
15	dasNov3	Dasypus novemcinctus	Armadillo	GCF_000208655.1_Dasnov3.0	vertebrate_mammalian
16	echTel2	Echinops telfairi	Tenrec	GCF_000313985.1_EchTel2.0	vertebrate_mammalian
17	eleEdw1	Elephantulus edwardii	Cape elephant shrew	GCF_000299155.1_EleEdw1.0	vertebrate_mammalian
18	eriEur2	Erinaceus europaeus	Hedgehog	GCF_000296755.1_EriEur2.0	vertebrate_mammalian
19	felCat5	Felis catus	Cat	GCF_000181335.1_Felis_catus-6.2	vertebrate_mammalian
20	felCat8	Felis catus	Cat	GCF_000181335.2_Felis_catus_8.0	vertebrate_mammalian
21	galVar1	Galeopterus variegatus	Malayan flying lemur	GCF_000696425.1_G_variegatus-3.0.2	vertebrate_mammalian
22	hetGla2	Heterocephalus glaber	Naked mole-rat	GCF_000247695.1_HetGla_female_1.0	vertebrate_mammalian
23	hg38	Homo sapiens	Human	GCF_000001405.26_GRCh38	vertebrate_mammalian
24	lepWed1	Leptonychotes weddellii	Weddell seal	GCF_000349705.1_LepWed1.0	vertebrate_mammalian
25	lipVex1	Lipotes vexillifer	Yangtze river dolphin	GCF_000442215.1_Lipotes_vexillifer_v1	vertebrate_mammalian
26	macFas5	Macaca fascicularis	Crab-eating macaque	GCF_000364345.1_Macaca_fascicularis_5.0	vertebrate_mammalian
27	mesAur1	Mesocricetus auratus	Golden hamster	GCF_000349665.1_MesAur1.0	vertebrate_mammalian
28	micMur2	Microcebus murinus	Mouse lemur	GCF_000165445.1_Mmur_2.0	vertebrate_mammalian
29	micOch1	Microtus ochrogaster	Prairie vole	GCF_000317375.1_MicOch1.0	vertebrate_mammalian
30	myoBra1	Myotis brandtii	Brandt's myotis (bat)	GCF_000412655.1_ASM41265v1	vertebrate_mammalian
31	myoDav1	Myotis davidii	David's myotis (bat)	GCF_000327345.1_ASM32734v1	vertebrate_mammalian
32	myoLuc2	Myotis lucifugus	Microbat	GCF_000147115.1_Myoluc2.0	vertebrate_mammalian
33	nanGal1	Nannospalax galili	Upper Galilee mountains blind mole rat	GCF_000622305.1_S.galili_v1.0	vertebrate_mammalian
34	orcOrc1	Orcinus orca	Killer whale	GCF_000331955.2_Oorc_1.1	vertebrate_mammalian
35	oryAfe1	Orycteropus afer afer Orycteropus afer	Aardvark	GCF_000298275.1_OryAfe1.0	vertebrate_mammalian
36	otoGar3	Otolemur garnettii	Bushbaby	GCF_000181295.1_OtoGar3	vertebrate_mammalian
37	oviAri3	Ovis aries	Sheep	GCF_000298735.1_Oar_v3.1	vertebrate_mammalian
38	panHod1	Pantholops hodgsonii	Tibetan antelope	GCF_000400835.1_PHO1.0	vertebrate_mammalian
39	panPan1	Pan paniscus	Bonobo	GCF_000258655.1_panpan1	vertebrate_mammalian
40	panPan2	Pan paniscus	Bonobo	GCF_000258655.2_panpan1.1	vertebrate_mammalian
41	panTig1	Panthera tigris altaica Panthera tigris	Amur tiger	GCF_000464555.1_PanTig1.0	vertebrate_mammalian
42	panTro4	Pan troglodytes	Chimp	GCF_000001515.6_Pan_troglodytes-2.1.4	vertebrate_mammalian
43	panTro5	Pan troglodytes	Chimp	GCF_000001515.7_Pan_tro_3.0	vertebrate_mammalian
44	papAnu2	Papio anubis	Baboon	GCF_000264685.1_Panu_2.0	vertebrate_mammalian
45	perManBai1	Peromyscus maniculatus bairdii Peromyscus maniculatus	Prairie deer mouse	GCF_000500345.1_Pman_1.0	vertebrate_mammalian
46	phyCat1	Physeter catodon	Sperm whale	GCF_000472045.1_Physeter_macrocephalus-2.0.2	vertebrate_mammalian
47	rheMac8	Macaca mulatta	Rhesus	GCF_000772875.2_Mmul_8.0.1	vertebrate_mammalian
48	rhiRox1	Rhinopithecus roxellana	Golden snub-nosed monkey	GCF_000769185.1_Rrox_v1	vertebrate_mammalian
49	rouAeg1	Rousettus aegyptiacus	Egyptian rousette	GCF_001466805.2_Raegyp2.0	vertebrate_mammalian
50	sarHar1	Sarcophilus harrisii	Tasmanian devil	GCF_000189315.1_Devil_ref_v7.0	vertebrate_mammalian
51	sorAra2	Sorex araneus	Shrew	GCF_000181275.1_SorAra2.0	vertebrate_mammalian
52	speTri2	Spermophilus tridecemlineatus Ictidomys tridecemlineatus	Squirrel	GCF_000236235.1_SpeTri2.0	vertebrate_mammalian
53	susScr3	Sus scrofa	Pig	GCF_000003025.5_Sscrofa10.2	vertebrate_mammalian
54	tarSyr2	Tarsius syrichta Carlito syrichta	Tarsier	GCF_000164805.1_Tarsius_syrichta-2.0.1	vertebrate_mammalian
55	tarSyr2	Tarsius syrichta	Tarsier	GCF_000164805.1_Tarsius_syrichta-2.0.1	vertebrate_mammalian
56	triMan1	Trichechus manatus latirostris Trichechus manatus	Manatee	GCF_000243295.1_TriManLat1.0	vertebrate_mammalian
57	tupChi1	Tupaia chinensis	Chinese tree shrew	GCF_000334495.1_TupChi_1.0	vertebrate_mammalian
58	ursMar1	Ursus maritimus	Polar bear	GCF_000687225.1_UrsMar_1.0	vertebrate_mammalian
59	allMis1	Alligator mississippiensis	American alligator	GCF_000281125.1_allMis0.2	vertebrate_other
60	allSin1	Alligator sinensis	Chinese alligator	GCF_000455745.1_ASM45574v1	vertebrate_other
61	anaPla1	Anas platyrhynchos	Mallard duck	GCF_000355885.1_BGI_duck_1.0	vertebrate_other
62	anoCar2	Anolis carolinensis	Lizard	GCF_000090745.1_AnoCar2.0	vertebrate_other
63	apaVit1	Apaloderma vittatum	Bar tailed trogon	GCF_000703405.1_ASM70340v1	vertebrate_other
64	aptFor1	Aptenodytes forsteri	Emperor penguin	GCF_000699145.1_ASM69914v1	vertebrate_other
65	bucRhi1	Buceros rhinoceros silvestris Buceros rhinoceros	Rhinoceros hornbill	GCF_000710305.1_ASM71030v1	vertebrate_other
66	calAnn1	Calypte anna	Anna's hummingbird	GCF_000699085.1_ASM69908v1	vertebrate_other
67	calMil1	Callorhinchus milii	Elephant shark	GCF_000165045.1_Callorhinchus_milii-6.1.3	vertebrate_other
68	capCar1	Caprimulgus carolinensis	Chuck-will's-widow	GCF_000700745.1_ASM70074v1	vertebrate_other
69	carCri1	Cariama cristata	Red-legged seriema	GCF_000690535.1_ASM69053v1	vertebrate_other
70	chaVoc2	Charadrius vociferus	Killdeer	GCF_000708025.1_ASM70802v2	vertebrate_other
71	cheMyd1	Chelonia mydas	Green seaturtle	GCF_000344595.1_CheMyd_1.0	vertebrate_other
72	chlUnd1	Chlamydotis undulata macqueenii Chlamydotis macqueenii	Houbara bustard	GCF_000695195.1_ASM69519v1	vertebrate_other
73	colLiv1	Columba livia	Rock pigeon	GCF_000337935.1_Cliv_1.0	vertebrate_other
74	colStr1	Colius striatus	Speckled mousebird	GCF_000690715.1_ASM69071v1	vertebrate_other
75	corBra1	Corvus brachyrhynchos	American crow	GCF_000691975.1_ASM69197v1	vertebrate_other
76	cucCan1	Cuculus canorus	Common cuckoo	GCF_000709325.1_ASM70932v1	vertebrate_other
77	cynSem1	Cynoglossus semilaevis	Tongue sole	GCF_000523025.1_Cse_v1.0	vertebrate_other
78	danRer10	Danio rerio	Zebrafish	GCF_000002035.5_GRCz10	vertebrate_other
79	danRer7	Danio rerio	Zebrafish	GCF_000002035.4_Zv9	vertebrate_other
80	egrGar1	Egretta garzetta	Little egret	GCF_000687185.1_ASM68718v1	vertebrate_other
81	eurHel1	Eurypyga helias	Sunbittern	GCF_000690775.1_ASM69077v1	vertebrate_other
82	falChe1	Falco cherrug	Saker falcon	GCF_000337975.1_F_cherrug_v1.0	vertebrate_other
83	falPer1	Falco peregrinus	Peregrine falcon	GCF_000337955.1_F_peregrinus_v1.0	vertebrate_other
84	ficAlb2	Ficedula albicollis	Collared flycatcher	GCF_000247815.1_FicAlb1.5	vertebrate_other
85	fr3	Takifugu rubripes	Fugu	GCF_000180615.1_FUGU5	vertebrate_other
86	fulGla1	Fulmarus glacialis	Northern fulmar	GCF_000690835.1_ASM69083v1	vertebrate_other
87	galGal4	Gallus gallus	Chicken	GCF_000002315.3_Gallus_gallus-4.0	vertebrate_other
88	galGal5	Gallus gallus	Chicken	GCF_000002315.4_Gallus_gallus-5.0	vertebrate_other
89	gavSte1	Gavia stellata	Red-throated loon	GCF_000690875.1_ASM69087v1	vertebrate_other
90	gekJap0	Gekko japonicus	notFound	GCF_001447785.1_Gekko_japonicus_V1.1	vertebrate_other
91	geoFor1	Geospiza fortis	Medium ground finch	GCF_000277835.1_GeoFor_1.0	vertebrate_other
92	halAlb1	Haliaeetus albicilla	White-tailed eagle	GCF_000691405.1_ASM69140v1	vertebrate_other
93	halLeu1	Haliaeetus leucocephalus	Bald eagle	GCF_000737465.1_Haliaeetus_leucocephalus-4.0	vertebrate_other
94	latCha1	Latimeria chalumnae	Coelacanth	GCF_000225785.1_LatCha1	vertebrate_other
95	lepDis1	Leptosomus discolor	Cuckoo roller	GCF_000691785.1_ASM69178v1	vertebrate_other
96	mayZeb1	Maylandia zebra	Zebra mbuna	GCF_000238955.1_MetZeb1.1	vertebrate_other
97	melUnd1	Melopsittacus undulatus	Budgerigar	GCF_000238935.1_Melopsittacus_undulatus_6.3	vertebrate_other
98	merNub1	Merops nubicus	Northern carmine bee-eater	GCF_000691845.1_ASM69184v1	vertebrate_other
99	mesUni1	Mesitornis unicolor	Brown roatelo	GCF_000695765.1_ASM69576v1	vertebrate_other
100	nipNip1	Nipponia nippon	Crested ibis	GCF_000708225.1_ASM70822v1	vertebrate_other
101	notCor1	Notothenia coriiceps	Black rockcod	GCF_000735185.1_NC01	vertebrate_other
102	opiHoa1	Opisthocomus hoazin	Hoatzin	GCF_000692075.1_ASM69207v1	vertebrate_other
103	oreNil2	Oreochromis niloticus	Nile tilapia	GCF_000188235.2_Orenil1.1	vertebrate_other
104	pelCri1	Pelecanus crispus	Dalmatian pelican	GCF_000687375.1_ASM68737v1	vertebrate_other
105	pelSin1	Pelodiscus sinensis	Chinese softshell turtle	GCF_000230535.1_PelSin_1.0	vertebrate_other
106	phaCar1	Phalacrocorax carbo	Great cormorant	GCF_000708925.1_ASM70892v1	vertebrate_other
107	phaLep1	Phaethon lepturus	White-tailed tropicbird	GCF_000687285.1_ASM68728v1	vertebrate_other
108	picPub1	Picoides pubescens	Downy woodpecker	GCF_000699005.1_ASM69900v1	vertebrate_other
109	poeFor1	Poecilia formosa	Amazon molly	GCF_000485575.1_Poecilia_formosa-5.1.2	vertebrate_other
110	pseHum1	Pseudopodoces humilis	Tibetan ground jay	GCF_000331425.1_PseHum1.0	vertebrate_other
111	pteGut1	Pterocles gutturalis	Yellow-throated sandgrouse	GCF_000699245.1_ASM69924v1	vertebrate_other
112	pytBiv0	Python bivittatus	notFound	GCF_000186305.1_Python_molurus_bivittatus-5.0.2	vertebrate_other
113	pytBiv1	Python bivittatus	Burmese python	GCF_000186305.1_Python_molurus_bivittatus-5.0.2	vertebrate_other
114	strCam1	Struthio camelus australis Struthio camelus	Ostrich	GCF_000698965.1_ASM69896v1	vertebrate_other
115	taeGut2	Taeniopygia guttata	Zebra finch	GCF_000151805.1_Taeniopygia_guttata-3.2.4	vertebrate_other
116	tauEry1	Tauraco erythrolophus	Red crested turaco	GCF_000709365.1_ASM70936v1	vertebrate_other
117	thaSir0	Thamnophis sirtalis	notFound	GCF_001077635.1_Thamnophis_sirtalis-6.0	vertebrate_other
118	tinGut2	Tinamus guttatus	White throated tinamou	GCF_000705375.1_ASM70537v2	vertebrate_other
119	tytAlb1	Tyto alba	Barn owl	GCF_000687205.1_ASM68720v1	vertebrate_other
120	xenTro7	Xenopus tropicalis Xenopus Silurana tropicalis	X. tropicalis	GCF_000004195.2_Xtropicalis_v7	vertebrate_other
121	xenTro7	Xenopus tropicalis	X. tropicalis	GCF_000004195.2_Xtropicalis_v7	vertebrate_other
122	xipMac1	Xiphophorus maculatus	Southern platyfish	GCF_000241075.1_Xiphophorus_maculatus-4.4.2	vertebrate_other
123	zonAlb1	Zonotrichia albicollis	White-throated sparrow	GCF_000385455.1_Zonotrichia_albicollis-1.0.1	vertebrate_other
124	acrEch0	Acromyrmex echinatior	notFound	GCF_000204515.1_Aech_3.9	invertebrate
125	apiMel4	Apis mellifera	A. mellifera	GCF_000002195.4_Amel_4.5	invertebrate
126	attCep0	Atta cephalotes	notFound	GCF_000143395.1_Attacep1.0	invertebrate
127	caeRem4	Caenorhabditis remanei	C. remanei	GCF_000149515.1_ASM14951v1	invertebrate
128	camFlo0	Camponotus floridanus	notFound	GCF_000147175.1_CamFlo_1.0	invertebrate
129	ce11	Caenorhabditis elegans	C. elegans	GCF_000002985.6_WBcel235	invertebrate
130	cerBir0	Cerapachys biroi	notFound	GCF_000611835.1_CerBir1.0	invertebrate
131	ci3	Ciona intestinalis	C. intestinalis	GCF_000224145.1_KH	invertebrate
132	dm6	Drosophila melanogaster	D. melanogaster	GCF_000001215.4_Release_6_plus_ISO1_MT	invertebrate
133	droAna3	Drosophila ananassae	D. ananassae	GCF_000005115.1_dana_caf1	invertebrate
134	droBia2	Drosophila biarmipes	D. biarmipes	GCF_000233415.1_Dbia_2.0	invertebrate
135	droBip2	Drosophila bipectinata	D. bipectinata	GCF_000236285.1_Dbip_2.0	invertebrate
136	droEle2	Drosophila elegans	D. elegans	GCF_000224195.1_Dele_2.0	invertebrate
137	droEre2	Drosophila erecta	D. erecta	GCF_000005135.1_dere_caf1	invertebrate
138	droEug2	Drosophila eugracilis	D. eugracilis	GCF_000236325.1_Deug_2.0	invertebrate
139	droFic2	Drosophila ficusphila	D. ficusphila	GCF_000220665.1_Dfic_2.0	invertebrate
140	droGri2	Drosophila grimshawi	D. grimshawi	GCF_000005155.2_dgri_caf1	invertebrate
141	droKik2	Drosophila kikkawai	D. kikkawai	GCF_000224215.1_Dkik_2.0	invertebrate
142	droMir2	Drosophila miranda	D. miranda	GCF_000269505.1_DroMir_2.2	invertebrate
143	droMoj3	Drosophila mojavensis	D. mojavensis	GCF_000005175.2_dmoj_caf1	invertebrate
144	droPer1	Drosophila persimilis	D. persimilis	GCF_000005195.2_dper_caf1	invertebrate
145	droRho2	Drosophila rhopaloa	D. rhopaloa	GCF_000236305.1_Drho_2.0	invertebrate
146	droSuz1	Drosophila suzukii	D. suzukii	GCF_000472105.1_Dsuzukii.v01	invertebrate
147	droTak2	Drosophila takahashii	D. takahashii	GCF_000224235.1_Dtak_2.0	invertebrate
148	droVir3	Drosophila virilis	D. virilis	GCF_000005245.1_dvir_caf1	invertebrate
149	droWil2	Drosophila willistoni	D. willistoni	GCF_000005925.1_dwil_caf1	invertebrate
150	droYak3	Drosophila yakuba	D. yakuba	GCF_000005975.2_dyak_caf1	invertebrate
151	harSal0	Harpegnathos saltator	notFound	GCF_000147195.1_HarSal_1.0	invertebrate
152	linHum0	Linepithema humile	notFound	GCF_000217595.1_Lhum_UMD_V04	invertebrate
153	lotGig0	Lottia gigantea	Limpet	GCF_000327385.1_Helro1	invertebrate
154	pogBar0	Pogonomyrmex barbatus	notFound	GCF_000187915.1_Pbar_UMD_V03	invertebrate
155	solInv0	Solenopsis invicta	notFound	GCF_000188075.1_Si_gnG	invertebrate
156	strPur4	Strongylocentrotus purpuratus	S. purpuratus	GCF_000002235.3_Spur_3.1	invertebrate
157	araTha1	Arabidopsis thaliana	notFound	GCF_000001735.3_TAIR10	plant
158	ricCom1	Ricinus communis	notFound	GCF_000151685.1_JCVI_RCG_1.1	plant
159	resEbo1	Reston ebolavirus	Reston ebolavirus	GCF_000854085.1_ViralProj15006	viral
160	sudEbo1	Sudan ebolavirus	Sudan ebolavirus	GCF_000855585.1_ViralProj15012	viral
161	taiEbo1	Tai Forest ebolavirus	Tai forest ebolavirus	GCF_000888475.1_ViralProj51257	viral
162	zaiEbo1	Zaire ebolavirus	Zaire ebolavirus	GCF_000848505.1_ViralProj14703	viral