User contributions for Rhead
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14 February 2012
- 00:4400:44, 14 February 2012 diff hist +248 UCSC Genes tables added blastTabs section
- 00:3700:37, 14 February 2012 diff hist −1,827 UCSC Genes Staging Process removed list of assembly tables; added link to new UCSC Genes tables page
- 00:3200:32, 14 February 2012 diff hist +6 m UCSC Genes tables made headers slightly smaller
- 00:3100:31, 14 February 2012 diff hist +14 UCSC Genes tables Added "__FORCETOC__" to force a table of contents to show up at the beginning of the page
- 00:2400:24, 14 February 2012 diff hist +64 QAing UCSC Genes →wiki pages about known genes: added new ucsc genes tables page
- 00:2300:23, 14 February 2012 diff hist +322 UCSC Genes tables Added more titles, a link, and categories
- 00:0700:07, 14 February 2012 diff hist +839 UCSC Genes tables added proteins and sp tables
13 February 2012
- 23:4423:44, 13 February 2012 diff hist +979 N UCSC Genes tables Created page with "These are the lists of tables that were pushed with the latest UCSC Genes tracks. Please keep this page up to date! ;hg19 (January 2012 :bioCycMapDesc :bioCycPathway :ccdsKgMa..."
9 February 2012
- 00:3600:36, 9 February 2012 diff hist 0 m Post-Release-Checklist →Exoniphy: fixed misspelling
- 00:1900:19, 9 February 2012 diff hist +78 Post-Release-Checklist →UniProtKB: updated file locations
- 00:1500:15, 9 February 2012 diff hist −104 Post-Release-Checklist →Alert Ensembl: updated with emails and info supplied by Paul Flicek.
- 00:1000:10, 9 February 2012 diff hist +26 Post-Release-Checklist →Exoniphy: added Adam's email address
24 January 2012
- 23:2623:26, 24 January 2012 diff hist +222 BlastTabs →How to QA blastTabs: a loop for checking the hgBlastTab counts in the other dbs
- 23:1323:13, 24 January 2012 diff hist 0 BlastTabs →How to QA blastTabs: changed sacCer2 to sacCer3 in list of joiner identifiers
- 22:5622:56, 24 January 2012 diff hist +2 m BlastTabs →How to QA blastTabs: don't need headers in loop output
- 21:4821:48, 24 January 2012 diff hist +295 BlastTabs →How to QA blastTabs: added a loop for checking counts
- 05:4905:49, 24 January 2012 diff hist 0 QAing UCSC Genes →Comparison to previous build: updated second table with stats after rebuild of ucsc genes
- 05:4905:49, 24 January 2012 diff hist 0 QAing UCSC Genes →Comparison to previous build: updated table with stats after rebuild of ucsc genes
29 December 2011
- 01:0401:04, 29 December 2011 diff hist +78 UCSC Genes Staging Process clarified the organisms for which we build ucsc genes
15 November 2011
- 19:0519:05, 15 November 2011 diff hist +689 New track checklist →Searching (pre-QA): totally revamped this section to make it easier for pre-QA
10 November 2011
- 18:4418:44, 10 November 2011 diff hist +88 Pre-QA →Find track in browser & go to hgTrackUi: added link to assemblies list
4 November 2011
- 23:2323:23, 4 November 2011 diff hist −91 New track checklist →Searching (pre-QA): took out instructions to run checkHgFindSpec alone, since it depends on hgFindSpec_user if a trackDb_user is specified in .hg.conf
- 23:1823:18, 4 November 2011 diff hist +78 QAing UCSC Genes →Comparison to previous build: added note to check counts in knownCanonical, too
- 22:0122:01, 4 November 2011 diff hist +113 QAing UCSC Genes →HGGeneCheck: lots of small clarifications
- 21:2321:23, 4 November 2011 diff hist +1,987 QAing UCSC Genes added "comparison to previous build" section based on notes from Jim
- 20:4520:45, 4 November 2011 diff hist +70 QAing UCSC Genes →Other random notes: changed the header, clarified sentence.
- 19:2019:20, 4 November 2011 diff hist +307 QAing UCSC Genes →Actual steps: reformatting; took out instructions to run knownGene.csh; added Jim's joinerCheck instructions
- 18:4918:49, 4 November 2011 diff hist −1,641 QAing UCSC Genes →Background: stop spinning wheels looking for the right tables to push
- 00:5200:52, 4 November 2011 diff hist +16 Details pages -- conventions added degree symbols to list of things that should use html names
- 00:2300:23, 4 November 2011 diff hist +57 Details pages -- conventions added note about american spellings
2 November 2011
- 19:1819:18, 2 November 2011 diff hist +276 New track checklist →Label lengths (pre-QA): added instructions for how to check these for pre-QA
- 02:4502:45, 2 November 2011 diff hist −530 Outdated instructions for releasing an assembly →Verify that the number of records in the upstream*.zip files is consistent: removed! These are made by an automated process now, and are less prone to error.
1 November 2011
- 19:5719:57, 1 November 2011 diff hist +356 Outdated instructions for releasing an assembly →Read and verify READMEs: added an instruction to check the genbank.conf file against the upstream* readme
- 19:5519:55, 1 November 2011 diff hist +280 Outdated instructions for releasing an assembly →Next day follow-up: added note to check for genbank-generated downloads
- 18:1218:12, 1 November 2011 diff hist +104 UCSC Genes Staging Process →Releasing to the public website: added the beginning of isPcr instructions
- 00:3600:36, 1 November 2011 diff hist −151 UCSC Genes Staging Process →Tables in the Assembly Database: took out reference to table lists in source tree
- 00:3500:35, 1 November 2011 diff hist +26 UCSC Genes Staging Process →Data Involved: there are 3 tables needed for the old ucsc genes track; not one
31 October 2011
- 19:0319:03, 31 October 2011 diff hist +145 Outdated instructions for releasing an assembly →Turn on GenBank updates: changed mark -> brian; added etc-update-server to the make per brian
- 19:0019:00, 31 October 2011 diff hist +92 Outdated instructions for releasing an assembly →Verify downloads: clarified how automatic downloads show up
28 October 2011
- 01:4901:49, 28 October 2011 diff hist +74 New track checklist →Track description (pre-QA): added link to our details pages conventions
27 October 2011
- 19:0119:01, 27 October 2011 diff hist −99 Outdated instructions for releasing an assembly →Verify downloads: clarification on automatic downloads from mark
- 18:0018:00, 27 October 2011 diff hist −21 New track checklist →All details: 1 data point (pre-QA): took out instruction to look in table for a data point
- 17:5817:58, 27 October 2011 diff hist −9 New track checklist →Downloads (pre-QA)
- 17:3817:38, 27 October 2011 diff hist +1 m New track checklist →Track description (pre-QA): reorganized slightly
- 03:5703:57, 27 October 2011 diff hist +31 Outdated instructions for releasing an assembly →Pre-staging of assembly on hgwbeta: added instruction to claim the redmine ticket in addition to claiming the assembly in the push queue
- 03:5503:55, 27 October 2011 diff hist +135 Outdated instructions for releasing an assembly changed instructions for n-scan request from emailing markd and jeltje to making a redmine ticket and assigning it to mark
- 03:4603:46, 27 October 2011 diff hist +406 Outdated instructions for releasing an assembly →Verify downloads: added note about the genbank downloads that get automatically generated.
- 03:3803:38, 27 October 2011 diff hist +247 Outdated instructions for releasing an assembly →Verify that the number of records in the upstream*.zip files is consistent: added instructions to count the records in each file without unzipping
26 October 2011
- 22:3922:39, 26 October 2011 diff hist +15 CGI testing responsibilities mini-shuffle: move hgTables tickets to go w/ hgTables tester, replace it w/ hgHubConnect, and give Steve Mary's old CGIs
