KnownGene
From Genecats
Jump to navigationJump to search
Build UniProt and Protein databases
Initialize work directory
- Create and cd into work directory of the form /hive/data/genomes/$db/bed/gencode$GENCODE_VERSION/build
- Start a screen.
- Copy buildEnv.sh from previous build on this db
Setting environment variables
The environment variables used in the build are set in the script buildEnv.sh. All the other scripts assume that this script has been sourced in the current shell.
Extracting Gencode data
Building initial knownGene table
Adding primary reference tables
Building final knownGene core tables
Building bigGenePred
Adding trackDb entry
== Adding IsPcr server
