Single cell browsers

• simple user interface: http://covid19.cancer-pku.cn/
• using cellxgene
  • https://cellxgene.cziscience.com/e/96a3f64b-0ee9-40d8-91e9-813ce38261c9.cxg/
  • https://www.covid19cellatlas.org/
  • https://www.heartcellatlas.org/
  • https://www.kidneycellatlas.org/
• Browser with a collection of datasets: https://artyomovlab.wustl.edu/scn/. Datasets are mostly from GEO and automatically reprocessed through their own pipeline.
• Linnarsson lab mouse brain datasets: http://mousebrain.org/. Here's the loom viewer for a specific brain region: http://loom.linnarssonlab.org/dataset/cellmetadata/Mousebrain.org.level1/L1_Amygdala.loom
  • now as a wheel? http://mousebrain.org/development/wheel.html
• Viewer for Seurat 4.0 dataset: https://atlas.fredhutch.org/nygc/multimodal-pbmc/
• fetal gene atlas: https://descartes.brotmanbaty.org/bbi/human-gene-expression-during-development/
• Using UCSC Cell Browser:
  • http://retinalstemcellresearch.co.uk/CorneaCellAtlas/

Dataset collections from Max:

• EBI SXA
• Broad (systematic enough?)
• HCA DCP
• Scope https://vsn-pipelines-examples.readthedocs.io/en/latest/