Hg38 30-way Genome size statistics

see also

• Human 30-way Hg38 30-way conservation alignment
• Human 30-way Hg38 30-way conservation lastz parameters
• all other UCSC Multiple Alignments

statistics collected from UCSC 2bit files

• The external link in the first column goes to the FTP location where the genome sequence was obtained
• The external links from the UCSC database name go to the UCSC genome-preview browser for that genome
• N bases == unknown bases in the assembly marked by "N"
• non-N bases == called bases in the assembly
• total size == all bases in assembly, N and non-N
• The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
• The common name external links go to information pages for this genome
• The coverage numbers are taken directly from information README files from the sequencing center
• The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

do not edit, automatically generated table

order count/ ftp src	ucsc db name/ genome-preview	chrom count	total size	non-N bases	N base count	% masked	common name/ src info	coverage	N50 chrom.sizes	alignment type	% of hg38 matched (chainLink table)	chain minScore	chain linearGap
01	hg38	455	3,209,286,105	3,049,315,783	159,970,322	% 52.10	Human	20X	145138636	N/A	N/A	3000	medium
02	panTro5	44,449	3,231,170,666	3,132,619,616	98,551,050	% 52.72	Chimp	6X	135926727	SyntenicNet	95.355%	5000	medium
03	panPan2	10,274	3,286,643,896	2,725,890,006	560,753,890	% 50.59	Bonobo	26X	144709823	SyntenicNet	92.685%	3000	medium
04	gorGor5	15,998	3,080,431,298	3,080,431,298	0	% 50.02	Gorilla	71X	10016017	SyntenicNet	94.691%	3000	medium
05	ponAbe2	55	3,446,771,396	3,093,543,172	353,228,224	% 50.89	Orangutan	6X	135191526	RecipBest	89.187%	5000	medium
06	nomLeu3	17,492	2,962,077,449	2,756,609,047	205,468,402	% 51.14	Gibbon	5.6X	117381234	SyntenicNet	86.379%	3000	medium
07	nasLar1	319,550	3,011,982,740	2,397,109,760	614,872,980	% 46.33	Proboscis monkey	290X	137426304	RecipBest	74.541%	3000	medium
08	rhiBie1	105,031	2,977,074,741	2,801,879,982	175,194,759	% 50.27	Black snub-nosed monkey	76.6X	2225337	RecipBest	83.065%	5000	medium
09	rhiRox1	135,512	2,899,552,139	2,856,044,136	43,508,003	% 51.07	Golden snub-nosed monkey	53.7X	1549224	RecipBest	85.109%	3000	medium
10	colAng1	13,124	2,970,124,662	2,679,973,136	290,151,526	% 49.72	Angolan colobus	86.8X	7840981	SyntenicNet	81.641%	5000	medium
11	macFas5	7,601	2,946,843,737	2,803,866,385	142,977,352	% 50.11	Crab-eating macaque	68X	152835861	SyntenicNet	85.675%	3000	medium
12	rheMac8	284,728	3,236,224,332	3,142,091,753	94,132,579	% 54.33	Rhesus	47.4X	144306982	SyntenicNet	84.506%	5000	medium
13	papAnu3	63,251	2,948,397,226	2,893,266,807	55,130,419	% 52.40	Baboon	85X	139646187	RecipBest	86.336%	3000	medium
14	macNem1	9,734	2,948,720,071	2,838,503,040	110,217,031	% 50.07	Pig-tailed macaque	113.1X	15219753	SyntenicNet	83.524%	5000	medium
15	cerAty1	11,434	2,848,262,899	2,787,289,385	60,973,514	% 49.92	Sooty mangabey	192X	12849131	SyntenicNet	83.847%	5000	medium
16	saiBol1	2,685	2,608,572,064	2,477,131,095	131,440,969	% 46.69	Squirrel monkey	80X	18744880	SyntenicNet	70.565%	3000	medium
17	chlSab2	2,004	2,789,656,328	2,752,000,999	37,655,329	% 48.77	Green monkey	95X	101219884	SyntenicNet	84.393%	5000	medium
18	manLeu1	12,822	3,062,009,387	2,721,424,085	340,585,302	% 49.47	Drill	117.2X	3186748	SyntenicNet	82.498%	5000	medium
19	aotNan1	28,922	2,861,684,817	2,714,439,489	147,245,328	% 47.38	Ma's night monkey	132.4X	8268663	SyntenicNet	70.629%	5000	medium
20	calJac3	14,205	2,914,958,544	2,752,505,800	162,452,744	% 47.71	Marmoset	6X	132174527	SyntenicNet	71.709%	3000	medium
21	cebCap1	7,156	2,717,703,182	2,610,499,094	107,204,088	% 47.29	White-faced sapajou	81X	5274112	SyntenicNet	70.683%	5000	medium
22	eulFla1	38,366	2,115,567,618	2,094,103,399	21,464,219	% 39.60	Sclater's lemur	52X	413352	RecipBest	33.326%	5000	medium
23	eulMac1	26,772	2,119,875,225	2,101,039,320	18,835,905	% 39.43	Black lemur	21X	405987	RecipBest	33.708%	5000	medium
24	tarSyr2	337,189	3,453,864,774	3,405,755,564	48,109,210	% 47.85	Tarsier	48X	401181	RecipBest	56.022%	3000	medium
25	proCoq1	22,539	2,798,152,141	2,083,764,525	714,387,616	% 39.39	Coquerel's sifaka	104.7X	5604909	SyntenicNet	32.467%	5000	medium
26	micMur3	7,678	2,487,409,138	2,386,321,897	101,087,241	% 41.27	Mouse lemur	221.6X	108171978	SyntenicNet	29.728%	3000	medium
27	otoGar3	7,793	2,519,724,550	2,359,530,453	160,194,097	% 39.51	Bushbaby	137X	13852661	SyntenicNet	53.196%	3000	medium
28	canFam3	3,268	2,410,976,875	2,392,715,236	18,261,639	% 43.01	Dog	7.6X	63241923	SyntenicNet	50.395%	3000	medium
29	dasNov3	46,559	3,631,522,711	3,299,882,028	331,640,683	% 49.28	Armadillo	6X	1687935	SyntenicNet	45.349%	3000	medium
30	mm10	66	2,730,871,774	2,652,783,500	78,088,274	% 45.18	Mouse	20X	130694993	SyntenicNet	31.653%	3000	medium