Hg38 30-way conservation alignment
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see also
- Human 30-way Hg38 30-way Genome size statistics
- Human 30-way Hg38 30-way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on hg38 |
% of hg38 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | hg38 | Homo sapiens | Human | Dec. 2013 (GRCh38/hg38) | GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) | 2014-01-10 | 2013-12-25 | 2015-01-14 | N/A |
| 02 | panTro5 | Pan troglodytes | Chimp | May 2016 (Pan_tro 3.0/panTro5) | Chimpanzee Sequencing and Analysis Consortium | 2016-08-02 | 2016-08-02 | 2016-08-04 | 95.355% |
| 03 | panPan2 | Pan paniscus | Bonobo | Aug. 2015 (MPI-EVA panpan1.1/panPan2) | Max-Planck Institute for Evolutionary Anthropology | 2016-05-04 | 2016-05-04 | 2016-05-24 | 92.685% |
| 04 | gorGor5 | Gorilla gorilla gorilla | Gorilla | Mar. 2016 (GSMRT3/gorGor5) | UNIVERSITY OF WASHINGTON | 2016-06-22 | 2016-06-23 | 2016-06-25 | 94.691% |
| 05 | ponAbe2 | Pongo pygmaeus abelii | Orangutan | July 2007 (WUGSC 2.0.2/ponAbe2) | WUSTL 3.0 | 2009-08-15 | 2013-06-21 | 2014-09-02 | 89.187% |
| 06 | nomLeu3 | Nomascus leucogenys | Gibbon | Oct. 2012 (GGSC Nleu3.0/nomLeu3) | Gibbon Genome Sequencing Consortium | 2013-03-04 | 2013-03-01 | 2014-12-12 | 86.379% |
| 07 | nasLar1 | Nasalis larvatus | Proboscis monkey | Nov. 2014 (Charlie1.0/nasLar1) | Proboscis Monkey Functional Genome Consortium | 2014-12-12 | 2014-12-12 | 2014-12-15 | 74.541% |
| 08 | rhiBie1 | Rhinopithecus bieti | Black snub-nosed monkey | Aug. 2016 (ASM169854v1/rhiBie1) | Laboratory for conservation and utilization of Bio-resource | 2017-03-01 | 2017-03-01 | 2017-03-23 | 83.065% |
| 09 | rhiRox1 | Rhinopithecus roxellana | Golden snub-nosed monkey | Oct. 2014 (Rrox_v1/rhiRox1) | Novogene | 2015-02-20 | 2015-02-18 | 2015-02-23 | 85.109% |
| 10 | colAng1 | Colobus angolensis palliatus | Angolan colobus | Mar. 2015 (Cang.pa_1.0/colAng1) | Baylor College of Medicine | 2016-06-16 | 2016-06-17 | 2017-02-27 | 81.641% |
| 11 | macFas5 | Macaca fascicularis | Crab-eating macaque | Jun. 2013 (Macaca_fascicularis_5.0/macFas5) | Washington University (WashU) GCA_000364345.1 | 2013-06-30 | 2013-06-30 | 2014-12-14 | 85.675% |
| 12 | rheMac8 | Macaca mulatta | Rhesus | Nov. 2015 (BCM Mmul_8.0.1/rheMac8) | Baylor College of Medicine Genome Sequencing Center | 2016-02-02 | 2016-02-02 | 2016-02-08 | 84.506% |
| 13 | papAnu3 | Papio anubis | Baboon | Feb. 2013 (Baylor Panu_2.0/papAnu3) | Baylor College of Medicine | 2017-06-21 | 2017-06-21 | 2017-06-22 | 86.336% |
| 14 | macNem1 | Macaca nemestrina | Pig-tailed macaque | Mar. 2015 (Mnem_1.0/macNem1) | Baylor College of Medicine | 2017-02-25 | 2017-02-25 | 2017-02-27 | 83.524% |
| 15 | cerAty1 | Cercocebus atys | Sooty mangabey | Mar. 2015 (Caty_1.0/cerAty1) | Human Genome Sequencing Center - BCM | 2017-09-22 | 2017-09-22 | 2017-09-27 | 83.847% |
| 16 | saiBol1 | Saimiri boliviensis | Squirrel monkey | Oct. 2011 (Broad/saiBol1) | Broad SaiBol1.0 (GCA_000235385.1) | 2012-01-07 | 2012-01-09 | 2014-12-13 | 70.565% |
| 17 | chlSab2 | Chlorocebus sabaeus | Green monkey | Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2) | Vervet Genomics Consortium GCA_000409795.2 | 2014-04-10 | 2014-04-10 | 2014-07-11 | 84.393% |
| 18 | manLeu1 | Mandrillus leucophaeus | Drill | Mar. 2015 (Mleu.le_1.0/manLeu1) | Baylor College of Medicine | 2017-09-21 | 2017-09-21 | 2017-09-25 | 82.498% |
| 19 | aotNan1 | Aotus nancymaae | Ma's night monkey | Jun. 2017 (Anan_2.0/aotNan1) | Baylor College of Medicine | 2017-09-21 | 2017-09-22 | 2017-09-25 | 70.629% |
| 20 | calJac3 | Callithrix jacchus | Marmoset | March 2009 (WUGSC 3.2/calJac3) | WUSTL 3.2 (GCA_000004665.1) | 2010-02-05 | 2013-06-21 | 2014-12-13 | 71.709% |
| 21 | cebCap1 | Cebus capucinus imitator | White-faced sapajou | Apr. 2016 (Cebus_imitator-1.0/cebCap1) | McDonnell Genome Institute - Washington University School of Medicine | 2017-09-28 | 2017-09-28 | 2017-09-28 | 70.683% |
| 22 | eulFla1 | Eulemur flavifrons | Sclater's lemur | Aug. 2015 (Eflavifronsk33QCA/eulFla1) | University of Chicago | 2017-10-03 | 2017-10-03 | 2017-10-03 | 33.326% |
| 23 | eulMac1 | Eulemur macaco | Black lemur | Aug. 2015 (Emacaco_refEf_BWA_oneround/eulMac1) | University of Chicago | 2017-10-03 | 2017-10-04 | 2017-10-04 | 33.708% |
| 24 | tarSyr2 | Tarsius syrichta | Tarsier | Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) | Washington University | 2014-11-21 | 2014-11-22 | 2014-12-12 | 56.022% |
| 25 | proCoq1 | Propithecus coquereli | Coquerel's sifaka | Mar. 2015 (Pcoq_1.0/proCoq1) | Baylor College of Medicine | 2017-09-27 | 2017-09-28 | 2017-09-28 | 32.467% |
| 26 | micMur3 | Microcebus murinus | Mouse lemur | Feb. 2017 (Mmur_3.0/micMur3) | Broad Institute | 2017-03-02 | 2017-03-03 | 2017-03-04 | 29.728% |
| 27 | otoGar3 | Otolemur garnettii | Bushbaby | Mar. 2011 (Broad/otoGar3) | Broad Institute (GCA_000181295.3) | 2012-03-13 | 2012-03-14 | 2015-02-23 | 53.196% |
| 28 | canFam3 | Canis lupus familiaris | Dog | Sep. 2011 (Broad CanFam3.1/canFam3) | Broad CanFam3.1 (GCA_000002285.2) | 2012-01-05 | 2012-01-06 | 2015-04-10 | 50.395% |
| 29 | dasNov3 | Dasypus novemcinctus | Armadillo | Dec. 2011 (Baylor/dasNov3) | Baylor College of Medicine Dasnov3.0 (GCA_000208655.2) | 2012-04-12 | 2012-04-13 | 2015-04-29 | 45.349% |
| 30 | mm10 | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) | 2012-02-06 | 2012-02-07 | 2015-04-09 | 31.653% |
