File list
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | User | Description | Versions |
|---|---|---|---|---|---|---|
| 19:01, 9 April 2015 | SpongeAwg.pptx (file) |  |
15.07 MB | Jimkent | 1 | |
| 18:53, 9 April 2015 | EbolaUcsfSept192014.pptx (file) | |
53 KB | Jimkent | Presentation on Ebola and Genome Browser given at UCSF. | 1 |
| 17:43, 19 March 2015 | MatrixSummary pl.txt (file) |  |
6 KB | Hiram | used in lastz tuning procedure, examines output of the four lastz_D outputs to survey the differences | 1 |
| 17:17, 19 March 2015 | Create scores file control.txt (file) | |
653 bytes | Hiram | Parameters from Bob Harris for lastz tuning procedure | 1 |
| 17:14, 19 March 2015 | Expand scores file py.txt (file) | |
4 KB | Hiram | Script created by Bob Harris for lastz tuning operations | 1 |
| 17:10, 19 March 2015 | AdjustSizes pl.txt (file) | |
3 KB | Hiram | chrom.sizes files are now expected to exist as created by selectedFasta.sh | 2 |
| 17:09, 19 March 2015 | SelectedFasta sh.txt (file) | |
2 KB | Hiram | generalize the chrom.size creation and noMask option on fasta creation | 2 |
| 23:34, 18 March 2015 | TopAll sh.txt (file) | |
2 KB | Hiram | script used in lastz tuning procedure to run lastz_D on different sets of DNA sequences from query and target | 1 |
| 23:18, 18 March 2015 | MafScoreSizeScan pl.txt (file) | |
2 KB | Hiram | script used to scan a MAF file to extract scores, sizes, and coverage statistics of each alignment block. Used in lastz tuning procedures. | 1 |
| 20:50, 11 March 2015 | HgAi genecats 15 03 11.pdf (file) |  |
448 KB | AngieHinrichs | slides for Angie's presentation on hgAi (Annotation Integrator) March 11, 2015 | 1 |
| 20:47, 11 March 2015 | HgAi genecats 15 03 11.pptx (file) | |
453 KB | AngieHinrichs | slides for Angie's presentation on hgAi (Annotation Integrator) March 15, 2015 | 1 |
| 23:39, 25 February 2015 | G10K2015.pdf (file) | |
914 KB | Brianraney | 1 | |
| 18:03, 13 October 2014 | Ashg2014.pdf (file) | |
914 KB | Brianraney | 1 | |
| 22:02, 19 September 2014 | GenomeInformatics2014Poster.pdf (file) | |
64 KB | Galt | Poster made by Galt Barber for Genome Informatics 2014 conference in Cambridge, UK. | 1 |
| 22:28, 20 May 2014 | KarenMigaCentromere.pdf (file) | |
43.49 MB | Ann | Karen Miga's presentation to the Genome Browser group on 19 May 2014: GRCh38 Centromere Reference Models. | 1 |
| 19:58, 9 April 2014 | Neur1MarsupPlacent2.png (file) |  |
121 KB | Tomemerald | 1 | |
| 20:59, 4 February 2014 | BME230 Winter 2014.ppt (file) | |
13.79 MB | Hiram | Hiram's presentation to BME230 Winter 2014 11 February - brief browser usage introduction, assembly hub demonstration, table browser intersection, plus information on source code but not part of the discussion) | 1 |
| 13:58, 1 November 2013 | GI2013.pdf (file) | |
1.25 MB | Brianraney | 1 | |
| 20:37, 10 October 2013 | MammothLoop2.jpg (file) |  |
61 KB | Tomemerald | 1 | |
| 20:33, 10 October 2013 | TRPV3compGen.jpg (file) |  |
442 KB | Tomemerald | 1 | |
| 20:13, 10 October 2013 | AvianCRY1.jpg (file) |  |
149 KB | Tomemerald | 1 | |
| 18:45, 18 September 2013 | Dependency-Review-20130826.pdf (file) | |
35 KB | Gary Moro | A review of Genome Browser dependencies and the move to SDSC. | 1 |
| 21:54, 23 August 2013 | Browsermap.pdf (file) | |
201 KB | Gary Moro | This is the correctly updated file. | 3 |
| 20:05, 21 June 2013 | TrackHub presentation.pdf (file) | |
2.33 MB | Tracy.ballinger | 1 | |
| 19:11, 21 June 2013 | TrackHub presentation.ppt (file) | |
1.9 MB | Tracy.ballinger | 1 | |
| 22:36, 6 June 2013 | AssemblyHubs BoG 2013.pptx (file) | |
2.72 MB | Hiram | Assembly Hubs, Biology of Genomes meeting 2013 CSHL | 1 |
| 22:35, 6 June 2013 | AssemblyHubs BoG 2013.pdf (file) | |
3.06 MB | Hiram | Assembly Hubs, Biology of Genomes meeting 2013 CSHL | 1 |
| 16:31, 7 May 2013 | BoG2013variationSampleTrack.txt (file) | |
290 bytes | Rhead | 1 | |
| 16:14, 7 May 2013 | BoG2013variation.pdf (file) | |
2.3 MB | Rhead | 2 | |
| 16:13, 7 May 2013 | BoG2013variation.pptx (file) | |
2.24 MB | Rhead | 6 | |
| 20:52, 1 May 2013 | HgApi.ppt (file) | |
732 KB | Ann | Larry Meyer's Genecats talk on the Genome Browser API. | 1 |
| 06:48, 1 May 2013 | BoG2013variationAbstract.txt (file) | |
2 KB | Rhead | 3 | |
| 22:29, 20 March 2013 | UcscGenes.pptx (file) | |
3.19 MB | Brianraney | 1 | |
| 22:28, 20 March 2013 | UcscGenes.pdf (file) | |
2.97 MB | Brianraney | 1 | |
| 20:44, 18 March 2013 | 18MarMoveEllsemere5.gif (file) |  |
739 KB | Tomemerald | 1 | |
| 21:49, 17 March 2013 | Ascat2010.gif (file) |  |
6.07 MB | Tomemerald | 2 | |
| 21:48, 17 March 2013 | Ascat2013.gif (file) |  |
3.7 MB | Tomemerald | 1 | |
| 21:46, 17 March 2013 | Ascat2012.gif (file) |  |
8.13 MB | Tomemerald | 1 | |
| 21:44, 17 March 2013 | Ascat2011.gif (file) |  |
7.81 MB | Tomemerald | 1 | |
| 11:56, 16 March 2013 | Day74ascat3d.gif (file) |  |
3.62 MB | Tomemerald | 1 | |
| 22:02, 15 March 2013 | Jaxa3rdcropPicker415d.gif (file) |  |
161 KB | Tomemerald | 1 | |
| 23:09, 14 March 2013 | NaresH2.gif (file) |  |
4.57 MB | Tomemerald | 1 | |
| 05:43, 13 March 2013 | SameSpeciesChainNet.sh.txt (file) | |
5 KB | Hiram | Same species lift over, step 2 of 2, chain/net the blat psl results together into the result file | 1 |
| 05:04, 13 March 2013 | BlatJob.csh.txt (file) | |
2 KB | Hiram | script to use for the same species lift over procedure run.blat/ step 1 | 1 |
| 04:57, 13 March 2013 | SameSpeciesBlatSetup.sh.txt (file) | |
6 KB | Hiram | First step in the same species lift over procedure, set up for blat run, adding 11.ooc file construction for blat | 2 |
| 11:17, 12 March 2013 | BeaufortRotation4.gif (file) |  |
955 KB | Tomemerald | 1 | |
| 12:02, 11 March 2013 | EllesmereCrackageddon6.gif (file) |  |
1.84 MB | Tomemerald | 1 | |
| 21:23, 9 March 2013 | BigJaxa4NP3L204F120.gif (file) |  |
7.94 MB | Tomemerald | 1 | |
| 21:12, 9 March 2013 | BigJaxa4NP3big396.gif (file) |  |
5.69 MB | Tomemerald | 1 | |
| 01:46, 9 March 2013 | FinalTry50.gif (file) |  |
3.86 MB | Tomemerald | 1 |
